Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0015746

Physical Location & Seq

Genomic Coordinates Reverse (-)

15220291 .. 15223872

Gene Structure 3582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007270

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCTAGCGTAGTCCCTGACCAAGATGCAGGCGTTTTCAGATCGTTTTCAGAATCAACACCATTTAGTTACATTCTAAAGGTAGAGTCCTTTTCATTGCTGGCGGATGATTCAATTGCGGAGACAAATGTTAAATGTGAATCAGGGGTCTTCGGAGCCGGAGGATACAATTGGAAACTTGTGTTCTACCCAAATGGAAACAAGAAGAAGAATGTAAAAGACCACATTTCTCTCTACTTGGTAATGGCGGGGGAGAACTCACTCCAGCCTGGTGAGGAAGTATATGTTGATTTCAGGTTATTTTTGCTTGATCAGATAAAGAGAAAGTATTTGGTTGTTGAAGATGCTTTTACAAGGAACTTTTGCTTTCGAAGGAAGATGTCTGGTGCAGTCGGTTTTGATAAACTTGTCTCTCTAAGGGACTTTACTGATGCCTCCAATGGTTATCTAATTGATGATAAATGTGTGTTTGGAGCTGAGGTCTTTGTTTGTAATGGAAGAAGACCCGTACCCCAAGAAGATTGTCTATCAATAAGGAAGACTAGCTCACAGAAGTACAAGCATACTTGGAAGGTTGGAAACTTTTCAAGCTTAGCCGCTCAACGCTATGAAGAACGATTCACTGCTGGAGGCCAGAAATGGAAGATAACTCTCTATCCCGCGGGTAGTGGCGGTGGAGCGGGTACTCATCTCAGTCTTTTTCTGGCATTAGGTGCAAGTGGTCATATTTTCAGTGGCACTGATAAGAGTTGGGGTTGGGATCGTTTCATTACACTGGACGATTTCAGACAGAAAGACAAAGGGTTTTTGAGGAGGGATAATTGCTTAGTGGAGGCAGAATTCACGATCAATGGAACTGCTATGGTACTACGTACCTCAGACGAAAATGACACTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

300

Amino Acids

33.5

Weight (kDa)

7.57

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	23 - 161	1.3e-33	MATH domain
MATH	PF00917	42 - 163	2.4e-08	MATH domain
MATH_2	PF22486	187 - 238	2.3e-11	MATH domain
MATH_2	PF22486	245 - 280	1.9e-06	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0015746)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0475431 RchiOBHm_Chr4g0426891 RchiOBHm_Chr4g0426901
rosa_laevigata	RLG00000007270
rosa_multiflora	Rmu_co8427477.1_g000001 Rmu_sc0016637.1_g000008
rosa_rugosa	Rorug03G0148800.1 Rorug04G0215300
rosa_samantha	Rh3AG199100 Rh3BG228900 Rh3CG223300 Rh3DG224200 Rh4AG270700 Rh4BG277000
rosa_wichuraiana	Rw4G023490 Rw4G023500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	599, 680
AccII	CGCG	1 cut(s)	662
AciI	CCGC	8 cut(s)	104, 119, 248, 597, 660, 662, 672, 680
AclWI	GGATC	1 cut(s)	768
AcsI	RAATTY	1 cut(s)	839
AfaI	GTAC	5 cut(s)	510, 557, 685, 867, 874
AgsI	TTSAA	3 cut(s)	114, 341, 588
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	3 cut(s)	476, 546, 591
AluI	AGCT	3 cut(s)	476, 546, 591
Alw26I	GTCTC	2 cut(s)	116, 415
AlwI	GGATC	1 cut(s)	768
AoxI	GGCC	1 cut(s)	631
ApoI	RAATTY	1 cut(s)	839
Asp700I	GAANNNNTTC	1 cut(s)	583
AsuHPI	GGTGA	1 cut(s)	284
AsuII	TTCGAA	1 cut(s)	370
AsuNHI	GCTAGC	1 cut(s)	5
BbsI	GAAGAC	3 cut(s)	142, 508, 545
BbvCI	CCTCAGC	1 cut(s)	477
BciT130I	CCWGG	1 cut(s)	270
BciVI	GTATCC	1 cut(s)	158
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	116, 415
BfaI	CTAG	2 cut(s)	6, 543
BfuI	GTATCC	1 cut(s)	158
BisI	GCNGC	1 cut(s)	597
BlpI	GCTNAGC	1 cut(s)	592
BlsI	GCNGC	1 cut(s)	598
Bme1390I	CCNGG	1 cut(s)	270
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	3 cut(s)	16, 334, 421
BmtI	GCTAGC	1 cut(s)	9
BpiI	GAAGAC	3 cut(s)	142, 508, 545
BpmI	CTGGAG	2 cut(s)	248, 648
Bpu10I	CCTNAGC	1 cut(s)	477
Bpu1102I	GCTNAGC	1 cut(s)	592
Bpu14I	TTCGAA	1 cut(s)	370
BsaAI	YACGTR	1 cut(s)	872
BsaJI	CCNNGG	1 cut(s)	660
BsaXI	ACNNNNNCTCC	2 cut(s)	465, 495
Bse1I	ACTGG	1 cut(s)	780
Bse3DI	GCAATG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	660
BseGI	GGATG	1 cut(s)	112
BseMI	GCAATG	1 cut(s)	95
BseMII	CTCAG	3 cut(s)	468, 706, 891
BseNI	ACTGG	1 cut(s)	780
BseRI	GAGGAG	1 cut(s)	826
BsgI	GTGCAG	1 cut(s)	408
Bsh1236I	CGCG	1 cut(s)	662
BshFI	GGCC	1 cut(s)	633
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	434
BsmAI	GTCTC	2 cut(s)	116, 415
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	1 cut(s)	633
Bsp119I	TTCGAA	1 cut(s)	370
Bsp143I	GATC	4 cut(s)	41, 310, 760, 846
Bsp1720I	GCTNAGC	1 cut(s)	592
BspACI	CCGC	8 cut(s)	104, 119, 248, 597, 660, 662, 672, 680
BspANI	GGCC	1 cut(s)	633
BspCNI	CTCAG	3 cut(s)	469, 705, 890
BspFNI	CGCG	1 cut(s)	662
BspLI	GGNNCC	1 cut(s)	157
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	768
BspT104I	TTCGAA	1 cut(s)	370
BsrBI	CCGCTC	2 cut(s)	599, 680
BsrDI	GCAATG	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	780
BssECI	CCNNGG	1 cut(s)	660
BssMI	GATC	4 cut(s)	41, 310, 760, 846
Bst2UI	CCWGG	1 cut(s)	270
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstBAI	YACGTR	1 cut(s)	872
BstBI	TTCGAA	1 cut(s)	370
BstC8I	GCNNGC	3 cut(s)	7, 31, 102
BstDEI	CTNAG	6 cut(s)	416, 477, 592, 692, 826, 877
BstDSI	CCRYGG	1 cut(s)	660
BstF5I	GGATG	1 cut(s)	112
BstFNI	CGCG	1 cut(s)	662
BstKTI	GATC	4 cut(s)	44, 313, 763, 849
BstMAI	GTCTC	2 cut(s)	116, 415
BstMBI	GATC	4 cut(s)	41, 310, 760, 846
BstMWI	GCNNNNNNNGC	1 cut(s)	713
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	268
BstSNI	TACGTA	1 cut(s)	872
BstUI	CGCG	1 cut(s)	662
BstV2I	GAAGAC	3 cut(s)	142, 508, 545
BsuI	GTATCC	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	633
BtgI	CCRYGG	1 cut(s)	660
BtsCI	GGATG	1 cut(s)	112
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	4 cut(s)	621, 738, 739, 773
Cac8I	GCNNGC	3 cut(s)	7, 31, 102
Cfr42I	CCGCGG	1 cut(s)	663
Csp6I	GTAC	5 cut(s)	509, 556, 684, 866, 873
CviJI	RGCY	8 cut(s)	5, 158, 268, 476, 546, 591, 596, 633
CviKI_1	RGCY	8 cut(s)	5, 158, 268, 476, 546, 591, 596, 633
CviQI	GTAC	5 cut(s)	509, 556, 684, 866, 873
DdeI	CTNAG	6 cut(s)	416, 477, 592, 692, 826, 877
DpnI	GATC	4 cut(s)	43, 312, 762, 848
DpnII	GATC	4 cut(s)	41, 310, 760, 846
EciI	GGCGGA	1 cut(s)	119
Eco105I	TACGTA	1 cut(s)	872
EcoRI	GAATTC	1 cut(s)	839
EcoRII	CCWGG	1 cut(s)	268
FaiI	YATR	8 cut(s)	283, 285, 564, 609, 726, 863, 896, 898
FaqI	GGGAC	1 cut(s)	434
FauI	CCCGC	4 cut(s)	241, 655, 667, 673
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	597
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	597
FspBI	CTAG	2 cut(s)	6, 543
GluI	GCNGC	1 cut(s)	597
GsuI	CTGGAG	2 cut(s)	248, 648
HaeIII	GGCC	1 cut(s)	633
HapII	CCGG	1 cut(s)	159
HindIII	AAGCTT	1 cut(s)	589
HinfI	GANTC	5 cut(s)	53, 86, 110, 140, 618
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	1 cut(s)	284
Hpy188I	TCNGA	6 cut(s)	41, 52, 155, 315, 788, 880
Hpy188III	TCNNGA	1 cut(s)	844
HpyAV	CCTTC	2 cut(s)	366, 565
HpyCH4IV	ACGT	1 cut(s)	871
HpyCH4V	TGCA	3 cut(s)	29, 389, 716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	713
HpyF3I	CTNAG	6 cut(s)	416, 477, 592, 692, 826, 877
HpySE526I	ACGT	1 cut(s)	871
Ksp22I	TGATCA	1 cut(s)	310
KspI	CCGCGG	1 cut(s)	663
Kzo9I	GATC	4 cut(s)	41, 310, 760, 846
LmnI	GCTCC	3 cut(s)	155, 473, 677
LweI	GCATC	3 cut(s)	16, 334, 421
MaeI	CTAG	2 cut(s)	6, 543
MaeII	ACGT	1 cut(s)	871
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	4 cut(s)	43, 312, 762, 848
MbiI	CCGCTC	2 cut(s)	599, 680
MboI	GATC	4 cut(s)	41, 310, 760, 846
MfeI	CAATTG	2 cut(s)	114, 169
MluCI	AATT	5 cut(s)	114, 169, 450, 820, 839
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	556
MnlI	CCTC	9 cut(s)	155, 268, 445, 472, 623, 804, 807, 826, 886
MroXI	GAANNNNTTC	1 cut(s)	583
MseI	TTAA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	662
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	270
MunI	CAATTG	2 cut(s)	114, 169
MvaI	CCWGG	1 cut(s)	270
MvnI	CGCG	1 cut(s)	662
MwoI	GCNNNNNNNGC	1 cut(s)	713
NdeII	GATC	4 cut(s)	41, 310, 760, 846
NheI	GCTAGC	1 cut(s)	5
NlaIV	GGNNCC	1 cut(s)	157
NspV	TTCGAA	1 cut(s)	370
PdmI	GAANNNNTTC	1 cut(s)	583
PfeI	GAWTC	4 cut(s)	53, 110, 140, 618
PkrI	GCNGC	1 cut(s)	598
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Ppu21I	YACGTR	1 cut(s)	872
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	157
RsaI	GTAC	5 cut(s)	510, 557, 685, 867, 874
RsaNI	GTAC	5 cut(s)	509, 556, 684, 866, 873
SacII	CCGCGG	1 cut(s)	663
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	1 cut(s)	597
Sau3AI	GATC	4 cut(s)	41, 310, 760, 846
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	270
SfaNI	GCATC	3 cut(s)	16, 334, 421
Sfr303I	CCGCGG	1 cut(s)	663
SfuI	TTCGAA	1 cut(s)	370
SgrBI	CCGCGG	1 cut(s)	663
SnaBI	TACGTA	1 cut(s)	872
Sse9I	AATT	5 cut(s)	114, 169, 450, 820, 839
SsiI	CCGC	8 cut(s)	104, 119, 248, 597, 660, 662, 672, 680
SspMI	CTAG	2 cut(s)	6, 543
StyD4I	CCNGG	1 cut(s)	268
TaiI	ACGT	1 cut(s)	874
TaqI	TCGA	1 cut(s)	370
TasI	AATT	5 cut(s)	114, 169, 450, 820, 839
TatI	WGTACW	1 cut(s)	555
TauI	GCSGC	1 cut(s)	599
TfiI	GAWTC	4 cut(s)	53, 110, 140, 618
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	4 cut(s)	628, 739, 745, 780
TspDTI	ATGAA	3 cut(s)	84, 624, 757
TspRI	CASTG	4 cut(s)	628, 739, 745, 780
XapI	RAATTY	1 cut(s)	839
XmnI	GAANNNNTTC	1 cut(s)	583
XspI	CTAG	2 cut(s)	6, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.