Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0015746

Physical Location & Seq

Genomic Coordinates Forward (+)

49079003 .. 49081031

Gene Structure 2029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G023490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCTATCGTAGTCTCCGACCAAGATGCAGATGCAGGAGTTTTCAGATCGTTTTCAGAATCAACACCATTTAGTTACATTCTAAAGGTAGAGTCCTTTTCATTGCTGGCGGATGATTCAATTGCGGAGACAAATGTTAAATGTGAATCAGGGGTCTTCGGAGCCGGAGGATACAATTGGAAACTTGTGATCTACCCAAATGGAAACAAGAAGAAGAATGTAAAAGACCACATCTCTCTCTACTTGGTAATGGCGGGAGAGAACTCACTCCAGCCTGGTGAGGAAGTATATGTTGATTTCAGGTTATTTTTGCTTGATCAGATAAAGAGCAAGTACTTGGTTGTTGAAGTATATGCTTTTACAAGGAACTTTTGCTTTCGAAGGGAGATGTCTGGTGCGGTCGGTTTTGATAAACTTGTCTCTCTAAGGGACTTTGCTGATGCCTCCAGTGGTTATCTAATTGATGATAAATGTGTGTTTGGAGCTGAGGTCTTTGTTTGTAATGGAAGAAGACCCGTACCCCAAGCAGATTGTCTATCAATAAGGAAGACTACTTCACAGAAGTACAAGCATACTTGGAAGGTTAGGAACTTTTCAAGCTTAGCCGCTCAATGCTATGAAGAACGATTTACGGCTGGAGGCCGGAAATGGAAGATAACTCTCTATCCCACGGGGCATGGTGCTGGAGCGGGTACTCATCTCAGTCTTTTTCTGGCATTAGCTGATCCAGAAAATCTTCCTGATGGCACCAAAATATCTACCAATTATTGCCTGCGCGTTGTAGATCAAATACATGGGCATTGTATTAAAAATAGTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

273

Amino Acids

30.37

Weight (kDa)

8.04

Isoelectric Point (pI)

25.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	25 - 164	3.2e-33	MATH domain
MATH	PF00917	43 - 166	2e-08	MATH domain
MATH_2	PF22486	190 - 265	4.6e-18	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015746)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0475431 RchiOBHm_Chr4g0426891 RchiOBHm_Chr4g0426901
rosa_laevigata	RLG00000007270
rosa_multiflora	Rmu_co8427477.1_g000001 Rmu_sc0016637.1_g000008
rosa_rugosa	Rorug03G0148800.1 Rorug04G0215300
rosa_samantha	Rh3AG199100 Rh3BG228900 Rh3CG223300 Rh3DG224200 Rh4AG270700 Rh4BG277000
rosa_wichuraiana	Rw4G023490 Rw4G023500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	746
AccBSI	CCGCTC	2 cut(s)	608, 689
AccII	CGCG	1 cut(s)	777
AciI	CCGC	6 cut(s)	110, 125, 254, 398, 606, 689
AclWI	GGATC	1 cut(s)	719
AfaI	GTAC	4 cut(s)	335, 519, 566, 694
AgsI	TTSAA	3 cut(s)	120, 347, 597
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	3 cut(s)	485, 600, 722
AluI	AGCT	3 cut(s)	485, 600, 722
Alw26I	GTCTC	3 cut(s)	19, 122, 424
AlwI	GGATC	1 cut(s)	719
AoxI	GGCC	1 cut(s)	640
Asp700I	GAANNNNTTC	1 cut(s)	735
AspLEI	GCGC	1 cut(s)	777
AsuHPI	GGTGA	1 cut(s)	290
AsuII	TTCGAA	1 cut(s)	379
BanI	GGYRCC	1 cut(s)	746
BbsI	GAAGAC	3 cut(s)	148, 517, 554
BbvCI	CCTCAGC	1 cut(s)	486
BccI	CCATC	1 cut(s)	737
BceAI	ACGGC	1 cut(s)	648
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BciT130I	CCWGG	1 cut(s)	276
BciVI	GTATCC	1 cut(s)	164
BclI	TGATCA	1 cut(s)	316
BcoDI	GTCTC	3 cut(s)	19, 122, 424
BfuI	GTATCC	1 cut(s)	164
BisI	GCNGC	1 cut(s)	606
BlpI	GCTNAGC	1 cut(s)	601
BlsI	GCNGC	1 cut(s)	607
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	276
BmiI	GGNNCC	2 cut(s)	163, 748
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	3 cut(s)	16, 22, 430
BpiI	GAAGAC	3 cut(s)	148, 517, 554
BpmI	CTGGAG	4 cut(s)	254, 430, 657, 705
Bpu10I	CCTNAGC	1 cut(s)	486
Bpu1102I	GCTNAGC	1 cut(s)	601
Bpu14I	TTCGAA	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	669
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bse1I	ACTGG	1 cut(s)	447
Bse3DI	GCAATG	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	669
BseGI	GGATG	1 cut(s)	118
BseMI	GCAATG	1 cut(s)	101
BseMII	CTCAG	2 cut(s)	477, 715
BseNI	ACTGG	1 cut(s)	447
Bsh1236I	CGCG	1 cut(s)	777
Bsh1285I	CGRYCG	1 cut(s)	402
BshFI	GGCC	1 cut(s)	642
BshNI	GGYRCC	1 cut(s)	746
BsiEI	CGRYCG	1 cut(s)	402
BsiSI	CCGG	2 cut(s)	165, 643
BslFI	GGGAC	1 cut(s)	443
BsmAI	GTCTC	3 cut(s)	19, 122, 424
BsmFI	GGGAC	1 cut(s)	443
BsnI	GGCC	1 cut(s)	642
Bsp119I	TTCGAA	1 cut(s)	379
Bsp143I	GATC	5 cut(s)	47, 189, 316, 724, 784
Bsp1720I	GCTNAGC	1 cut(s)	601
BspACI	CCGC	6 cut(s)	110, 125, 254, 398, 606, 689
BspANI	GGCC	1 cut(s)	642
BspCNI	CTCAG	2 cut(s)	478, 714
BspFNI	CGCG	1 cut(s)	777
BspLI	GGNNCC	2 cut(s)	163, 748
BspPI	GGATC	1 cut(s)	719
BspT104I	TTCGAA	1 cut(s)	379
BspT107I	GGYRCC	1 cut(s)	746
BsrBI	CCGCTC	2 cut(s)	608, 689
BsrDI	GCAATG	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	447
BssECI	CCNNGG	1 cut(s)	669
BssMI	GATC	5 cut(s)	47, 189, 316, 724, 784
Bst2UI	CCWGG	1 cut(s)	276
BstBI	TTCGAA	1 cut(s)	379
BstC8I	GCNNGC	2 cut(s)	108, 773
BstDEI	CTNAG	4 cut(s)	425, 486, 601, 701
BstDSI	CCRYGG	1 cut(s)	669
BstF5I	GGATG	1 cut(s)	118
BstFNI	CGCG	1 cut(s)	777
BstHHI	GCGC	1 cut(s)	777
BstKTI	GATC	5 cut(s)	50, 192, 319, 727, 787
BstMAI	GTCTC	3 cut(s)	19, 122, 424
BstMBI	GATC	5 cut(s)	47, 189, 316, 724, 784
BstMCI	CGRYCG	1 cut(s)	402
BstNI	CCWGG	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	274
BstUI	CGCG	1 cut(s)	777
BstV2I	GAAGAC	3 cut(s)	148, 517, 554
BsuI	GTATCC	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	642
BtgI	CCRYGG	1 cut(s)	669
BtsCI	GGATG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	454
Cac8I	GCNNGC	2 cut(s)	108, 773
CfoI	GCGC	1 cut(s)	777
Csp6I	GTAC	4 cut(s)	334, 518, 565, 693
CviAII	CATG	2 cut(s)	677, 794
CviJI	RGCY	9 cut(s)	5, 164, 274, 485, 600, 605, 635, 642, 722
CviKI_1	RGCY	9 cut(s)	5, 164, 274, 485, 600, 605, 635, 642, 722
CviQI	GTAC	4 cut(s)	334, 518, 565, 693
DdeI	CTNAG	4 cut(s)	425, 486, 601, 701
DpnI	GATC	5 cut(s)	49, 191, 318, 726, 786
DpnII	GATC	5 cut(s)	47, 189, 316, 724, 784
EciI	GGCGGA	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	274
FaeI	CATG	2 cut(s)	680, 797
FaiI	YATR	8 cut(s)	289, 291, 352, 354, 573, 618, 678, 795
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	2 cut(s)	676, 793
FauI	CCCGC	2 cut(s)	247, 682
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	606
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	606
GlaI	GCGC	1 cut(s)	776
GluI	GCNGC	1 cut(s)	606
GsuI	CTGGAG	4 cut(s)	254, 430, 657, 705
HaeIII	GGCC	1 cut(s)	642
HapII	CCGG	2 cut(s)	165, 643
HhaI	GCGC	1 cut(s)	777
Hin1II	CATG	2 cut(s)	680, 797
Hin6I	GCGC	1 cut(s)	775
HinP1I	GCGC	1 cut(s)	775
HindIII	AAGCTT	1 cut(s)	598
HinfI	GANTC	4 cut(s)	59, 92, 116, 146
HpaII	CCGG	2 cut(s)	165, 643
HphI	GGTGA	1 cut(s)	290
Hpy188I	TCNGA	5 cut(s)	19, 47, 58, 161, 321
Hpy188III	TCNNGA	2 cut(s)	728, 740
HpyAV	CCTTC	2 cut(s)	375, 574
HpyCH4V	TGCA	2 cut(s)	29, 35
HpyF3I	CTNAG	4 cut(s)	425, 486, 601, 701
Hsp92II	CATG	2 cut(s)	680, 797
HspAI	GCGC	1 cut(s)	775
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	5 cut(s)	47, 189, 316, 724, 784
LmnI	GCTCC	3 cut(s)	161, 482, 686
LweI	GCATC	3 cut(s)	16, 22, 430
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	5 cut(s)	49, 191, 318, 726, 786
MbiI	CCGCTC	2 cut(s)	608, 689
MboI	GATC	5 cut(s)	47, 189, 316, 724, 784
MboII	GAAGA	9 cut(s)	148, 223, 226, 519, 522, 559, 632, 664, 728
MfeI	CAATTG	2 cut(s)	120, 175
MluCI	AATT	4 cut(s)	120, 175, 459, 763
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	5 cut(s)	161, 274, 454, 481, 632
MroXI	GAANNNNTTC	1 cut(s)	735
MseI	TTAA	2 cut(s)	138, 807
MspI	CCGG	2 cut(s)	165, 643
MspR9I	CCNGG	1 cut(s)	276
MunI	CAATTG	2 cut(s)	120, 175
MvaI	CCWGG	1 cut(s)	276
MvnI	CGCG	1 cut(s)	777
NdeII	GATC	5 cut(s)	47, 189, 316, 724, 784
NlaIII	CATG	2 cut(s)	680, 797
NlaIV	GGNNCC	2 cut(s)	163, 748
NspV	TTCGAA	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	3 cut(s)	59, 116, 146
PkrI	GCNGC	1 cut(s)	607
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	2 cut(s)	163, 748
RsaI	GTAC	4 cut(s)	335, 519, 566, 694
RsaNI	GTAC	4 cut(s)	334, 518, 565, 693
SaqAI	TTAA	2 cut(s)	138, 807
SatI	GCNGC	1 cut(s)	606
Sau3AI	GATC	5 cut(s)	47, 189, 316, 724, 784
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	276
SetI	ASST	7 cut(s)	90, 305, 487, 492, 585, 602, 724
SfaNI	GCATC	3 cut(s)	16, 22, 430
SfuI	TTCGAA	1 cut(s)	379
Sse9I	AATT	4 cut(s)	120, 175, 459, 763
SsiI	CCGC	6 cut(s)	110, 125, 254, 398, 606, 689
StyD4I	CCNGG	1 cut(s)	274
TaqI	TCGA	1 cut(s)	379
TasI	AATT	4 cut(s)	120, 175, 459, 763
TatI	WGTACW	2 cut(s)	333, 564
TauI	GCSGC	1 cut(s)	608
TfiI	GAWTC	3 cut(s)	59, 116, 146
Tru1I	TTAA	2 cut(s)	138, 807
Tru9I	TTAA	2 cut(s)	138, 807
TscAI	CASTG	1 cut(s)	454
TspDTI	ATGAA	2 cut(s)	90, 633
TspRI	CASTG	1 cut(s)	454
XmnI	GAANNNNTTC	1 cut(s)	735
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.