Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016637.1

Orthogroup ID

OG0015746

Physical Location & Seq

Genomic Coordinates Forward (+)

32743 .. 33786

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016637.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atggctactgtagtctctgaccaagatgcagatgcaggggttatcagatcgttttcagaatcaacaccatttagttacattttaaaggtagagtccttttcattgctggcggatgattcaattgcggagacaaatgttaaatgtgaatcgggggtcttcggagccggaggatacaattggaaactcgtgttctacccaaatggaaacaagaagaagaatgtagaagaccacatctctctctacttggtaaccgcgggagagaactcactccagcctggtgaggaagtatatgttgatttcaggttatttttgcttgatcagataaagagcaagtacttggttgttgaagatgccaatacaagaaacttttgctttcgaggggagatgtctggtgcggtcggttttgataaacttgtctctctaagggactttactgatgcctccaatggttatctaattgatgataaatgtgtgtttggagctgaggtctttgtttgtaatggaagaagacccgtaccacaagcagattgtctatcaataaggaagactacctcaaagtacaagcatacttggaaggttgggaacttttcaaacttagccgctcaatgctatgaagaacgattcactgctggaggccagaaatggaagataattctctatcccgagggagacggtgatggaacgggtactcatctctctctttatttgtcattagctgatccagaagatcttgatggcaccaaagtatcaaccaatttctgcctgcgcctcgtagatcaagtacatgcaatgcactgtactaggaatgatagtaaccgtcttttcactggcgctactcagactttgggttgggatcgtttcattgcactggacgatttcagacaggaagacggagggcttttgagggaggatacttgctttgtggaggcagaggtcacggtcaatagaactgctatggtactaggtaccttaggccaaaatgacactaattcgggaagacgtaaatgtcgaaagatttgctcagggatcgcgcagtttgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

347

Amino Acids

38.58

Weight (kDa)

5.15

Isoelectric Point (pI)

25.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015746)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0475431 RchiOBHm_Chr4g0426891 RchiOBHm_Chr4g0426901
rosa_laevigata	RLG00000007270
rosa_multiflora	Rmu_co8427477.1_g000001 Rmu_sc0016637.1_g000008
rosa_rugosa	Rorug03G0148800.1 Rorug04G0215300
rosa_samantha	Rh3AG199100 Rh3BG228900 Rh3CG223300 Rh3DG224200 Rh4AG270700 Rh4BG277000
rosa_wichuraiana	Rw4G023490 Rw4G023500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1005
Acc65I	GGTACC	1 cut(s)	965
AccB1I	GGYRCC	2 cut(s)	737, 965
AccBSI	CCGCTC	1 cut(s)	602
AccII	CGCG	2 cut(s)	254, 1031
AciI	CCGC	6 cut(s)	110, 125, 252, 254, 395, 600
AclWI	GGATC	3 cut(s)	713, 861, 1034
AfaI	GTAC	8 cut(s)	335, 516, 560, 688, 783, 799, 960, 967
AgsI	TTSAA	3 cut(s)	120, 347, 591
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	2 cut(s)	482, 716
AluI	AGCT	2 cut(s)	482, 716
Alw26I	GTCTC	4 cut(s)	19, 122, 421, 663
AlwI	GGATC	3 cut(s)	713, 861, 1034
Ama87I	CYCGRG	1 cut(s)	662
AoxI	GGCC	2 cut(s)	634, 973
Asp718I	GGTACC	1 cut(s)	965
AspLEI	GCGC	3 cut(s)	768, 833, 1033
AsuHPI	GGTGA	2 cut(s)	290, 686
AvaI	CYCGRG	1 cut(s)	662
AxyI	CCTNAGG	1 cut(s)	970
BaeI	ACNNNNGTAYC	2 cut(s)	729, 762
BanI	GGYRCC	2 cut(s)	737, 965
BauI	CACGAG	1 cut(s)	185
BbsI	GAAGAC	6 cut(s)	148, 231, 514, 551, 894, 1003
BbvCI	CCTCAGC	1 cut(s)	483
BccI	CCATC	2 cut(s)	671, 728
BcgI	CGANNNNNNTGC	2 cut(s)	999, 1033
BciT130I	CCWGG	1 cut(s)	276
BciVI	GTATCC	2 cut(s)	164, 904
BclI	TGATCA	1 cut(s)	316
BcoDI	GTCTC	4 cut(s)	19, 122, 421, 663
BfaI	CTAG	2 cut(s)	801, 962
BfmI	CTRYAG	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	834
BfuI	GTATCC	2 cut(s)	164, 904
BglII	AGATCT	1 cut(s)	727
BisI	GCNGC	1 cut(s)	600
BlsI	GCNGC	1 cut(s)	601
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	276
BmeT110I	CYCGRG	1 cut(s)	662
BmiI	GGNNCC	3 cut(s)	163, 739, 967
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	4 cut(s)	16, 22, 340, 427
BpiI	GAAGAC	6 cut(s)	148, 231, 514, 551, 894, 1003
BpmI	CTGGAG	2 cut(s)	254, 651
Bpu10I	CCTNAGC	2 cut(s)	483, 1021
BsaJI	CCNNGG	2 cut(s)	252, 663
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bse1I	ACTGG	2 cut(s)	832, 873
Bse21I	CCTNAGG	1 cut(s)	970
Bse3DI	GCAATG	3 cut(s)	101, 795, 861
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	252, 663
BseGI	GGATG	1 cut(s)	118
BseMI	GCAATG	3 cut(s)	101, 795, 861
BseMII	CTCAG	3 cut(s)	474, 851, 1035
BseNI	ACTGG	2 cut(s)	832, 873
Bsh1236I	CGCG	2 cut(s)	254, 1031
Bsh1285I	CGRYCG	1 cut(s)	399
BshFI	GGCC	2 cut(s)	636, 975
BshNI	GGYRCC	2 cut(s)	737, 965
BsiEI	CGRYCG	1 cut(s)	399
BsiHKCI	CYCGRG	1 cut(s)	662
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	440
BsmAI	GTCTC	4 cut(s)	19, 122, 421, 663
BsmBI	CGTCTC	1 cut(s)	663
BsmFI	GGGAC	1 cut(s)	440
BsnI	GGCC	2 cut(s)	636, 975
BsoBI	CYCGRG	1 cut(s)	662
Bsp143I	GATC	7 cut(s)	47, 316, 718, 727, 775, 853, 1026
BspACI	CCGC	6 cut(s)	110, 125, 252, 254, 395, 600
BspANI	GGCC	2 cut(s)	636, 975
BspCNI	CTCAG	3 cut(s)	475, 850, 1034
BspFNI	CGCG	2 cut(s)	254, 1031
BspLI	GGNNCC	3 cut(s)	163, 739, 967
BspPI	GGATC	3 cut(s)	713, 861, 1034
BspT107I	GGYRCC	2 cut(s)	737, 965
BsrBI	CCGCTC	1 cut(s)	602
BsrDI	GCAATG	3 cut(s)	101, 795, 861
BsrI	ACTGG	2 cut(s)	832, 873
BssECI	CCNNGG	2 cut(s)	252, 663
BssMI	GATC	7 cut(s)	47, 316, 718, 727, 775, 853, 1026
BssSI	CACGAG	1 cut(s)	185
Bst2BI	CACGAG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	5 cut(s)	10, 674, 797, 818, 940
BstC8I	GCNNGC	2 cut(s)	108, 764
BstDEI	CTNAG	6 cut(s)	422, 483, 595, 837, 970, 1021
BstDSI	CCRYGG	1 cut(s)	252
BstEII	GGTNACC	1 cut(s)	247
BstF5I	GGATG	1 cut(s)	118
BstFNI	CGCG	2 cut(s)	254, 1031
BstH2I	RGCGCY	1 cut(s)	834
BstHHI	GCGC	3 cut(s)	768, 833, 1033
BstKTI	GATC	7 cut(s)	50, 319, 721, 730, 778, 856, 1029
BstMAI	GTCTC	4 cut(s)	19, 122, 421, 663
BstMBI	GATC	7 cut(s)	47, 316, 718, 727, 775, 853, 1026
BstMCI	CGRYCG	1 cut(s)	399
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	788
BstPI	GGTNACC	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	9
BstUI	CGCG	2 cut(s)	254, 1031
BstV2I	GAAGAC	6 cut(s)	148, 231, 514, 551, 894, 1003
BstX2I	RGATCY	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	727
Bsu36I	CCTNAGG	1 cut(s)	970
BsuI	GTATCC	2 cut(s)	164, 904
BsuRI	GGCC	2 cut(s)	636, 975
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	624
BtsIMutI	CAGTG	4 cut(s)	624, 793, 825, 866
Cac8I	GCNNGC	2 cut(s)	108, 764
CfoI	GCGC	3 cut(s)	768, 833, 1033
Cfr42I	CCGCGG	1 cut(s)	255
Csp6I	GTAC	8 cut(s)	334, 515, 559, 687, 782, 798, 959, 966
CviAII	CATG	1 cut(s)	785
CviJI	RGCY	9 cut(s)	5, 164, 274, 482, 599, 636, 716, 898, 975
CviKI_1	RGCY	9 cut(s)	5, 164, 274, 482, 599, 636, 716, 898, 975
CviQI	GTAC	8 cut(s)	334, 515, 559, 687, 782, 798, 959, 966
DdeI	CTNAG	6 cut(s)	422, 483, 595, 837, 970, 1021
DpnI	GATC	7 cut(s)	49, 318, 720, 729, 777, 855, 1028
DpnII	GATC	7 cut(s)	47, 316, 718, 727, 775, 853, 1026
DraI	TTTAAA	1 cut(s)	84
DrdI	GACNNNNNNGTC	1 cut(s)	1005
DseDI	GACNNNNNNGTC	1 cut(s)	1005
EciI	GGCGGA	1 cut(s)	125
Eco81I	CCTNAGG	1 cut(s)	970
Eco88I	CYCGRG	1 cut(s)	662
Eco91I	GGTNACC	1 cut(s)	247
EcoO65I	GGTNACC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	274
Esp3I	CGTCTC	1 cut(s)	663
FaeI	CATG	1 cut(s)	788
FaiI	YATR	6 cut(s)	289, 291, 567, 612, 786, 956
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	1 cut(s)	784
FauI	CCCGC	1 cut(s)	247
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	600
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	600
FspBI	CTAG	2 cut(s)	801, 962
GlaI	GCGC	3 cut(s)	767, 832, 1032
GluI	GCNGC	1 cut(s)	600
GsuI	CTGGAG	2 cut(s)	254, 651
HaeII	RGCGCY	1 cut(s)	834
HaeIII	GGCC	2 cut(s)	636, 975
HapII	CCGG	1 cut(s)	165
HhaI	GCGC	3 cut(s)	768, 833, 1033
Hin1II	CATG	1 cut(s)	788
Hin6I	GCGC	3 cut(s)	766, 831, 1031
HinP1I	GCGC	3 cut(s)	766, 831, 1031
HinfI	GANTC	5 cut(s)	59, 92, 116, 146, 621
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	2 cut(s)	290, 686
Hpy188I	TCNGA	7 cut(s)	19, 47, 58, 161, 321, 840, 881
Hpy188III	TCNNGA	4 cut(s)	662, 722, 731, 993
HpyAV	CCTTC	1 cut(s)	568
HpyCH4III	ACNGT	5 cut(s)	10, 674, 797, 818, 940
HpyCH4IV	ACGT	1 cut(s)	1000
HpyCH4V	TGCA	5 cut(s)	29, 35, 788, 793, 866
HpyF3I	CTNAG	6 cut(s)	422, 483, 595, 837, 970, 1021
HpySE526I	ACGT	1 cut(s)	1000
Hsp92II	CATG	1 cut(s)	788
HspAI	GCGC	3 cut(s)	766, 831, 1031
KpnI	GGTACC	1 cut(s)	969
Ksp22I	TGATCA	1 cut(s)	316
KspI	CCGCGG	1 cut(s)	255
Kzo9I	GATC	7 cut(s)	47, 316, 718, 727, 775, 853, 1026
LmnI	GCTCC	2 cut(s)	161, 479
LweI	GCATC	4 cut(s)	16, 22, 340, 427
MaeI	CTAG	2 cut(s)	801, 962
MaeII	ACGT	1 cut(s)	1000
MaeIII	GTNAC	4 cut(s)	74, 247, 812, 934
MalI	GATC	7 cut(s)	49, 318, 720, 729, 777, 855, 1028
MbiI	CCGCTC	1 cut(s)	602
MboI	GATC	7 cut(s)	47, 316, 718, 727, 775, 853, 1026
MfeI	CAATTG	2 cut(s)	120, 175
MflI	RGATCY	1 cut(s)	727
MluCI	AATT	6 cut(s)	120, 175, 456, 651, 754, 988
MlyI	GAGTC	1 cut(s)	101
MseI	TTAA	2 cut(s)	83, 138
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	276
MunI	CAATTG	2 cut(s)	120, 175
MvaI	CCWGG	1 cut(s)	276
MvnI	CGCG	2 cut(s)	254, 1031
NdeII	GATC	7 cut(s)	47, 316, 718, 727, 775, 853, 1026
NlaIII	CATG	1 cut(s)	788
NlaIV	GGNNCC	3 cut(s)	163, 739, 967
NmuCI	GTSAC	1 cut(s)	934
NspI	RCATGY	1 cut(s)	788
PcsI	WCGNNNNNNNCGW	1 cut(s)	1006
PfeI	GAWTC	4 cut(s)	59, 116, 146, 621
PkrI	GCNGC	1 cut(s)	601
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	274
PspEI	GGTNACC	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	3 cut(s)	163, 739, 967
PsuI	RGATCY	1 cut(s)	727
RsaI	GTAC	8 cut(s)	335, 516, 560, 688, 783, 799, 960, 967
RsaNI	GTAC	8 cut(s)	334, 515, 559, 687, 782, 798, 959, 966
SacII	CCGCGG	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	83, 138
SatI	GCNGC	1 cut(s)	600
Sau3AI	GATC	7 cut(s)	47, 316, 718, 727, 775, 853, 1026
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	276
SfaNI	GCATC	4 cut(s)	16, 22, 340, 427
SfcI	CTRYAG	1 cut(s)	9
Sfr303I	CCGCGG	1 cut(s)	255
SgrBI	CCGCGG	1 cut(s)	255
Sse9I	AATT	6 cut(s)	120, 175, 456, 651, 754, 988
SsiI	CCGC	6 cut(s)	110, 125, 252, 254, 395, 600
SspMI	CTAG	2 cut(s)	801, 962
StyD4I	CCNGG	1 cut(s)	274
TaaI	ACNGT	5 cut(s)	10, 674, 797, 818, 940
TaiI	ACGT	1 cut(s)	1003
TaqI	TCGA	2 cut(s)	376, 1009
TasI	AATT	6 cut(s)	120, 175, 456, 651, 754, 988
TatI	WGTACW	4 cut(s)	333, 558, 781, 797
TauI	GCSGC	1 cut(s)	602
TfiI	GAWTC	4 cut(s)	59, 116, 146, 621
Tru1I	TTAA	2 cut(s)	83, 138
Tru9I	TTAA	2 cut(s)	83, 138
TscAI	CASTG	4 cut(s)	631, 800, 832, 873
TseFI	GTSAC	1 cut(s)	934
Tsp45I	GTSAC	1 cut(s)	934
TspDTI	ATGAA	3 cut(s)	90, 627, 850
TspGWI	ACGGA	1 cut(s)	906
TspRI	CASTG	4 cut(s)	631, 800, 832, 873
XceI	RCATGY	1 cut(s)	788
XspI	CTAG	2 cut(s)	801, 962
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.