Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015746

Physical Location & Seq

Genomic Coordinates Forward (+)

52230053 .. 52232485

Gene Structure 2433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39588

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGACTAATCATATATACATACCTTTCTATTTAGATGCAGGAGTTTTCAGATCGTTTTCAGAATCAACACCATTTAGTTACATTCTAAAGGTAGAGTCCTTTTCATTGCTGGCGGATGATTCAATTGCGGAGACAAATGTTAAATGTGAATCAGGGGTCTTCGGAGCCGGAGGATACAATTGGAAACTCGTGTTCTACCCAAAAGGAAACAAGAAGAAGAATGTAAACGACCACATCTCTCTCTACTTGGTAATGGCGGGGGAGAACTCACTCCAGCCTGGTGAGGAAGTATATGTTGATTTCAAGTTATTTTTGCTTGATCAGATAAAGAGCAAGTACTTGGTTGTTGAAGATGCTTTTACAAGGAACTTTTGCTTTCGAAGGGAGATGTCTGGTGCCGTCGGTTTTGATAAACTTGTCTCTCTAAGGGACTTTACTGATGCCTCCAGTGGTTATCTAATTGATGATAAATGTGTGTTTGGAGCTGAGGTCTTTGTTTGTAATGGAAGAAGACCCGTACCCCAAGCAGATTTTCTATCAATAAGGAAGACTACTTCACAGAAGTACAAGCATACTTGGAAGGTTAGGAACTTTTCAAGCTTAGCCGCTCCATGCTATGAAGAACGATTTACGGCTGCAGGCCAGAAATGGAAGATAACTCTTTATCCCACGGGGAATGGTGGTGGAGCGGGTACTCATCTCAGTCTTTTTCTGGCATTAGCTGATCCAGAAAATCTTCCTGATGGCACCAAAATATCTACCAATTATTGCCTGCGCGTTGTAGATCAAATACATGGGCATTGTATTAAAAATAGTGTAAGTGGTCGTATTTTCAGTGGCACTGATAAGATTTGGGGTTGGCCTCGTTTCATTACACTGGACGATTTCAGACGGGAACACAAAGGGTTTTTGAGGAGGGATACTTGCATAGTGGAGGCAGAGTTCACGATCAATGGAACTGCTATGGGACTACGTACCTCAGGCGAAAATGACACTAACAATCAGAAAGAAGTCAATGTCGAAAGATTTGCTGAGGGATCGCGCACTTTGTTTAAAAAGAAAACTCTTGTGAACTACATTTTAACTTGCACTACTACAATTTGGGCCATAGGGCGCCGACACAGCCCACCAATATGTTTCGGTGTTCTTTCGATATTGGTTTATCACCGTTATGTTACATCGGTGAGTTTGTGCAGAGACAGCACCGATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

404

Amino Acids

45.64

Weight (kDa)

8.73

Isoelectric Point (pI)

28.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	26 - 164	1.4e-32	MATH domain
MATH	PF00917	45 - 166	2.5e-08	MATH domain
MATH_2	PF22486	190 - 314	9.2e-29	MATH domain
MATH	PF00917	195 - 317	2.4e-12	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015746)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0475431 RchiOBHm_Chr4g0426891 RchiOBHm_Chr4g0426901
rosa_laevigata	RLG00000007270
rosa_multiflora	Rmu_co8427477.1_g000001 Rmu_sc0016637.1_g000008
rosa_rugosa	Rorug03G0148800.1 Rorug04G0215300
rosa_samantha	Rh3AG199100 Rh3BG228900 Rh3CG223300 Rh3DG224200 Rh4AG270700 Rh4BG277000
rosa_wichuraiana	Rw4G023490 Rw4G023500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	395, 746, 1113
AccBSI	CCGCTC	2 cut(s)	608, 689
AccII	CGCG	2 cut(s)	777, 1042
AciI	CCGC	5 cut(s)	113, 128, 257, 606, 689
AclWI	GGATC	2 cut(s)	719, 1045
AcyI	GRCGYC	1 cut(s)	1114
AfaI	GTAC	5 cut(s)	338, 519, 566, 694, 976
AgsI	TTSAA	4 cut(s)	123, 304, 350, 597
AjnI	CCWGG	1 cut(s)	277
AjuI	GAANNNNNNNTTGG	2 cut(s)	516, 548
AloI	GAACNNNNNNTCC	2 cut(s)	926, 958
AluBI	AGCT	3 cut(s)	485, 600, 722
AluI	AGCT	3 cut(s)	485, 600, 722
Alw26I	GTCTC	3 cut(s)	125, 424, 1191
AlwI	GGATC	2 cut(s)	719, 1045
AoxI	GGCC	3 cut(s)	640, 860, 1104
ApeKI	GCWGC	1 cut(s)	635
Asp700I	GAANNNNTTC	1 cut(s)	735
AspLEI	GCGC	3 cut(s)	777, 1044, 1116
AspS9I	GGNCC	1 cut(s)	1104
AsuHPI	GGTGA	3 cut(s)	293, 1157, 1195
AsuII	TTCGAA	1 cut(s)	379
AxyI	CCTNAGG	1 cut(s)	979
BanI	GGYRCC	3 cut(s)	395, 746, 1113
BauI	CACGAG	1 cut(s)	188
BbsI	GAAGAC	3 cut(s)	151, 517, 554
BbvCI	CCTCAGC	2 cut(s)	486, 1032
BbvI	GCAGC	1 cut(s)	622
BccI	CCATC	1 cut(s)	737
BceAI	ACGGC	2 cut(s)	383, 648
BcgI	CGANNNNNNTGC	2 cut(s)	1010, 1044
BciT130I	CCWGG	1 cut(s)	279
BciVI	GTATCC	2 cut(s)	167, 913
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	3 cut(s)	125, 424, 1191
BfmI	CTRYAG	1 cut(s)	636
BfoI	RGCGCY	1 cut(s)	1117
BfuI	GTATCC	2 cut(s)	167, 913
BisI	GCNGC	2 cut(s)	606, 636
BlpI	GCTNAGC	1 cut(s)	601
BlsI	GCNGC	2 cut(s)	607, 637
BmcAI	AGTACT	1 cut(s)	338
Bme1390I	CCNGG	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	1104
BmiI	GGNNCC	4 cut(s)	166, 397, 748, 1115
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	3 cut(s)	25, 343, 430
BpiI	GAAGAC	3 cut(s)	151, 517, 554
BpmI	CTGGAG	2 cut(s)	257, 430
Bpu10I	CCTNAGC	2 cut(s)	486, 1032
Bpu1102I	GCTNAGC	1 cut(s)	601
Bpu14I	TTCGAA	1 cut(s)	379
BsaAI	YACGTR	1 cut(s)	974
BsaHI	GRCGYC	1 cut(s)	1114
BsaJI	CCNNGG	1 cut(s)	669
BsaXI	ACNNNNNCTCC	4 cut(s)	474, 504, 926, 956
Bse1I	ACTGG	2 cut(s)	447, 882
Bse21I	CCTNAGG	1 cut(s)	979
Bse3DI	GCAATG	1 cut(s)	104
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	669
BseGI	GGATG	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	104
BseMII	CTCAG	4 cut(s)	477, 715, 993, 1023
BseNI	ACTGG	2 cut(s)	447, 882
BseRI	GAGGAG	1 cut(s)	928
BseXI	GCAGC	1 cut(s)	622
BsgI	GTGCAG	1 cut(s)	1213
Bsh1236I	CGCG	2 cut(s)	777, 1042
BshFI	GGCC	3 cut(s)	642, 862, 1106
BshNI	GGYRCC	3 cut(s)	395, 746, 1113
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	2 cut(s)	443, 981
BsmAI	GTCTC	3 cut(s)	125, 424, 1191
BsmFI	GGGAC	2 cut(s)	443, 981
BsnI	GGCC	3 cut(s)	642, 862, 1106
Bsp119I	TTCGAA	1 cut(s)	379
Bsp143I	GATC	7 cut(s)	50, 319, 724, 784, 948, 1037, 1207
Bsp1720I	GCTNAGC	1 cut(s)	601
BspACI	CCGC	5 cut(s)	113, 128, 257, 606, 689
BspANI	GGCC	3 cut(s)	642, 862, 1106
BspCNI	CTCAG	4 cut(s)	478, 714, 992, 1024
BspFNI	CGCG	2 cut(s)	777, 1042
BspLI	GGNNCC	4 cut(s)	166, 397, 748, 1115
BspMAI	CTGCAG	1 cut(s)	640
BspPI	GGATC	2 cut(s)	719, 1045
BspT104I	TTCGAA	1 cut(s)	379
BspT107I	GGYRCC	3 cut(s)	395, 746, 1113
BsrBI	CCGCTC	2 cut(s)	608, 689
BsrDI	GCAATG	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	447, 882
BssECI	CCNNGG	1 cut(s)	669
BssMI	GATC	7 cut(s)	50, 319, 724, 784, 948, 1037, 1207
BssNI	GRCGYC	1 cut(s)	1114
BssSI	CACGAG	1 cut(s)	188
Bst2BI	CACGAG	1 cut(s)	188
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	1169
BstACI	GRCGYC	1 cut(s)	1114
BstBAI	YACGTR	1 cut(s)	974
BstBI	TTCGAA	1 cut(s)	379
BstC8I	GCNNGC	3 cut(s)	111, 640, 773
BstDEI	CTNAG	6 cut(s)	425, 486, 601, 701, 979, 1032
BstDSI	CCRYGG	1 cut(s)	669
BstF5I	GGATG	1 cut(s)	121
BstFNI	CGCG	2 cut(s)	777, 1042
BstH2I	RGCGCY	1 cut(s)	1117
BstHHI	GCGC	3 cut(s)	777, 1044, 1116
BstKTI	GATC	7 cut(s)	53, 322, 727, 787, 951, 1040, 1210
BstMAI	GTCTC	3 cut(s)	125, 424, 1191
BstMBI	GATC	7 cut(s)	50, 319, 724, 784, 948, 1037, 1207
BstMWI	GCNNNNNNNGC	2 cut(s)	1122, 1200
BstNI	CCWGG	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	636
BstSNI	TACGTA	1 cut(s)	974
BstUI	CGCG	2 cut(s)	777, 1042
BstV1I	GCAGC	1 cut(s)	622
BstV2I	GAAGAC	3 cut(s)	151, 517, 554
Bsu36I	CCTNAGG	1 cut(s)	979
BsuI	GTATCC	2 cut(s)	167, 913
BsuRI	GGCC	3 cut(s)	642, 862, 1106
BtgI	CCRYGG	1 cut(s)	669
BtsCI	GGATG	1 cut(s)	121
BtsIMutI	CAGTG	4 cut(s)	454, 840, 841, 875
Cac8I	GCNNGC	3 cut(s)	111, 640, 773
CfoI	GCGC	3 cut(s)	777, 1044, 1116
Cfr13I	GGNCC	1 cut(s)	1104
Csp6I	GTAC	5 cut(s)	337, 518, 565, 693, 975
CviAII	CATG	2 cut(s)	612, 794
CviQI	GTAC	5 cut(s)	337, 518, 565, 693, 975
DdeI	CTNAG	6 cut(s)	425, 486, 601, 701, 979, 1032
DinI	GGCGCC	1 cut(s)	1115
DpnI	GATC	7 cut(s)	52, 321, 726, 786, 950, 1039, 1209
DpnII	GATC	7 cut(s)	50, 319, 724, 784, 948, 1037, 1207
DraI	TTTAAA	1 cut(s)	1054
EciI	GGCGGA	1 cut(s)	128
Eco105I	TACGTA	1 cut(s)	974
Eco81I	CCTNAGG	1 cut(s)	979
EcoRII	CCWGG	1 cut(s)	277
EgeI	GGCGCC	1 cut(s)	1115
EheI	GGCGCC	1 cut(s)	1115
FaeI	CATG	2 cut(s)	615, 797
FaqI	GGGAC	2 cut(s)	443, 981
FatI	CATG	2 cut(s)	611, 793
FauI	CCCGC	2 cut(s)	250, 682
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	2 cut(s)	606, 636
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	2 cut(s)	606, 636
GlaI	GCGC	3 cut(s)	776, 1043, 1115
GluI	GCNGC	2 cut(s)	606, 636
GsuI	CTGGAG	2 cut(s)	257, 430
HaeII	RGCGCY	1 cut(s)	1117
HaeIII	GGCC	3 cut(s)	642, 862, 1106
HapII	CCGG	1 cut(s)	168
HhaI	GCGC	3 cut(s)	777, 1044, 1116
Hin1I	GRCGYC	1 cut(s)	1114
Hin1II	CATG	2 cut(s)	615, 797
Hin6I	GCGC	3 cut(s)	775, 1042, 1114
HinP1I	GCGC	3 cut(s)	775, 1042, 1114
HindIII	AAGCTT	1 cut(s)	598
HinfI	GANTC	4 cut(s)	62, 95, 119, 149
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	3 cut(s)	293, 1157, 1195
Hpy166II	GTNNAC	3 cut(s)	226, 945, 1072
Hpy188I	TCNGA	6 cut(s)	50, 61, 164, 324, 890, 1005
Hpy188III	TCNNGA	3 cut(s)	728, 740, 946
Hpy8I	GTNNAC	3 cut(s)	226, 945, 1072
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	2 cut(s)	375, 574
HpyCH4III	ACNGT	1 cut(s)	1169
HpyCH4IV	ACGT	1 cut(s)	973
HpyCH4V	TGCA	5 cut(s)	38, 638, 927, 1089, 1194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1122, 1200
HpyF3I	CTNAG	6 cut(s)	425, 486, 601, 701, 979, 1032
HpySE526I	ACGT	1 cut(s)	973
Hsp92I	GRCGYC	1 cut(s)	1114
Hsp92II	CATG	2 cut(s)	615, 797
HspAI	GCGC	3 cut(s)	775, 1042, 1114
KasI	GGCGCC	1 cut(s)	1113
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	7 cut(s)	50, 319, 724, 784, 948, 1037, 1207
LmnI	GCTCC	4 cut(s)	164, 482, 613, 686
Lsp1109I	GCAGC	1 cut(s)	622
LweI	GCATC	3 cut(s)	25, 343, 430
MaeII	ACGT	1 cut(s)	973
MaeIII	GTNAC	2 cut(s)	77, 1174
MalI	GATC	7 cut(s)	52, 321, 726, 786, 950, 1039, 1209
MbiI	CCGCTC	2 cut(s)	608, 689
MboI	GATC	7 cut(s)	50, 319, 724, 784, 948, 1037, 1207
MfeI	CAATTG	2 cut(s)	123, 178
MluCI	AATT	5 cut(s)	123, 178, 459, 763, 1098
Mly113I	GGCGCC	1 cut(s)	1114
MlyI	GAGTC	1 cut(s)	104
MroXI	GAANNNNTTC	1 cut(s)	735
MseI	TTAA	4 cut(s)	141, 807, 1053, 1082
MslI	CAYNNNNRTG	2 cut(s)	1132, 1170
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	279
MunI	CAATTG	2 cut(s)	123, 178
MvaI	CCWGG	1 cut(s)	279
MvnI	CGCG	2 cut(s)	777, 1042
MwoI	GCNNNNNNNGC	2 cut(s)	1122, 1200
NarI	GGCGCC	1 cut(s)	1114
NdeII	GATC	7 cut(s)	50, 319, 724, 784, 948, 1037, 1207
NlaIII	CATG	2 cut(s)	615, 797
NlaIV	GGNNCC	4 cut(s)	166, 397, 748, 1115
NspV	TTCGAA	1 cut(s)	379
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	3 cut(s)	62, 119, 149
PkrI	GCNGC	2 cut(s)	607, 637
PleI	GAGTC	1 cut(s)	103
PluTI	GGCGCC	1 cut(s)	1117
PpsI	GAGTC	1 cut(s)	103
Ppu21I	YACGTR	1 cut(s)	974
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	4 cut(s)	166, 397, 748, 1115
PspPI	GGNCC	1 cut(s)	1104
PstI	CTGCAG	1 cut(s)	640
RsaI	GTAC	5 cut(s)	338, 519, 566, 694, 976
RsaNI	GTAC	5 cut(s)	337, 518, 565, 693, 975
RseI	CAYNNNNRTG	2 cut(s)	1132, 1170
SaqAI	TTAA	4 cut(s)	141, 807, 1053, 1082
SatI	GCNGC	2 cut(s)	606, 636
Sau3AI	GATC	7 cut(s)	50, 319, 724, 784, 948, 1037, 1207
Sau96I	GGNCC	1 cut(s)	1104
ScaI	AGTACT	1 cut(s)	338
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	279
SetI	ASST	9 cut(s)	25, 93, 487, 492, 585, 602, 724, 976, 980
SfaNI	GCATC	3 cut(s)	25, 343, 430
SfcI	CTRYAG	1 cut(s)	636
SfoI	GGCGCC	1 cut(s)	1115
SfuI	TTCGAA	1 cut(s)	379
SmiMI	CAYNNNNRTG	2 cut(s)	1132, 1170
SnaBI	TACGTA	1 cut(s)	974
Sse9I	AATT	5 cut(s)	123, 178, 459, 763, 1098
SsiI	CCGC	5 cut(s)	113, 128, 257, 606, 689
SspDI	GGCGCC	1 cut(s)	1113
StyD4I	CCNGG	1 cut(s)	277
TaaI	ACNGT	1 cut(s)	1169
TaiI	ACGT	1 cut(s)	976
TaqI	TCGA	3 cut(s)	379, 1020, 1151
TasI	AATT	5 cut(s)	123, 178, 459, 763, 1098
TatI	WGTACW	2 cut(s)	336, 564
TauI	GCSGC	1 cut(s)	608
TfiI	GAWTC	3 cut(s)	62, 119, 149
Tru1I	TTAA	4 cut(s)	141, 807, 1053, 1082
Tru9I	TTAA	4 cut(s)	141, 807, 1053, 1082
TscAI	CASTG	4 cut(s)	454, 841, 847, 882
TseI	GCWGC	1 cut(s)	635
TspDTI	ATGAA	3 cut(s)	93, 633, 859
TspRI	CASTG	4 cut(s)	454, 841, 847, 882
XmnI	GAANNNNTTC	1 cut(s)	735
ZrmI	AGTACT	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.