RchiOBHm_Chr3g0476121

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016059
Physical Location & Seq
Reverse (-)
22079228 .. 22080136
909 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 909 bp
ATGGAGAGATCTGGATGGAAGCCAAACGATGATCATCATCACATATGCCCGAATTGCCCCCGGTGCGGTTGTTCTAACACCAAGTTTTGTTACTATAACAACTACAGTTTGACACAGCCTAGGTACTTCTGCAAGGGCTGTAGGAGATACTGGACCAAAGGCGGTTCCCTCCGGAACGTCCCCGTCGGAGGCGGGTGCCGGAAGAACAGAAGAGGGTCAAGGTCGTTAAGGCTATCCACCAACACCACCACGGCTACCGGGAGTAATAATGTGAATAGTGGCACAATTGGGCATAATTCATATGGAATTAGTAGTTCATTGGATCCAGATTCTACTAGCTCCGGAGAGTCCAATCAGGATGCGCCACCACGTATTGATCTCGCAGTCGTTTATGCAAACTTCTTGAATCAGAAGCCAGTTTCCAGGAGTTCAGGATCTGATCAGTTGCCAGAATTTCCTGGGGAATTAAACCCGGGTTTAGATTTTTCAAGCTGCATAGCAAACATGAACATCAATGCAGGCTCAGGCTCAAGTATTCAGTTGGTGGAAGAAAATGGTCTTAATGGATCAATAGGATGTCACAGTACTCTATCTGAAAATTGTGGGACCATCAATGACCACATGTACTTTGGTGGGTTAGACCCATTAATCGATCATCATCAGAAGCATCAAGATCATAGCAGTGATCTAGTACAATATGCAAGTAGTACTCATGAATCAACTGATCATTTTGGGTTGCCACCATTGCCAGACCAAGAAGTATTGTGGTCTAGTTCTCACGATCAAATGATGGCTAGTCCTATCATGCAACCTACCCCTGTGCTCGGATCAGAGGCTCATGATCCAAACCTGTTAAATTGGAGCCCCTTATTCGATTTACCATGTAATGGAACTTTCTCCAGGACATGA

Protein Analysis

302

Amino Acids

32.94

Weight (kDa)

6.02

Isoelectric Point (pI)

47.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 18 - 71 2.9e-29 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52440 AT3G52440
fragaria_vesca FvH4_6g20401
malus_domestica MD12G1041000.v1.1 MD14G1040400.v1.1
prunus_persica Prupe.7G093900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0476121
rosa_laevigata RLG00000023789
rosa_multiflora Rmu_sc0000114.1_g000027
rosa_roxburghii Rroxscaffold_6G00405460
rosa_rugosa Rorug03G0152900
rosa_samantha Rh3BG234200 Rh3CG229600 Rh3DG229600
rosa_wichuraiana Rw3G018540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 195
AccB7I CCANNNNNTGG 1 cut(s) 887
AccIII TCCGGA 2 cut(s) 171, 341
AciI CCGC 3 cut(s) 66, 162, 192
AclWI GGATC 6 cut(s) 317, 330, 442, 574, 835, 836
AcsI RAATTY 1 cut(s) 452
AfaI GTAC 5 cut(s) 125, 586, 626, 693, 709
AfiI CCNNNNNNNGG 4 cut(s) 65, 188, 824, 887
AflIII ACRYGT 1 cut(s) 621
AgsI TTSAA 2 cut(s) 406, 489
AjnI CCWGG 3 cut(s) 422, 457, 899
AluBI AGCT 2 cut(s) 339, 492
AluI AGCT 2 cut(s) 339, 492
Alw21I GWGCWC 1 cut(s) 825
AlwI GGATC 6 cut(s) 317, 330, 442, 574, 835, 836
AlwNI CAGNNNCTG 1 cut(s) 437
Ama87I CYCGRG 1 cut(s) 472
Aor13HI TCCGGA 2 cut(s) 171, 341
ApeKI GCWGC 1 cut(s) 492
ApoI RAATTY 1 cut(s) 452
AseI ATTAAT 1 cut(s) 647
AspA2I CCTAGG 1 cut(s) 119
AspLEI GCGC 1 cut(s) 364
AspS9I GGNCC 2 cut(s) 153, 606
AsuC2I CCSGG 4 cut(s) 61, 259, 473, 474
AvaI CYCGRG 1 cut(s) 472
AvaII GGWCC 2 cut(s) 153, 606
AvrII CCTAGG 1 cut(s) 119
BamHI GGATCC 1 cut(s) 322
BanI GGYRCC 1 cut(s) 195
BanII GRGCYC 1 cut(s) 866
Bbv12I GWGCWC 1 cut(s) 825
BbvI GCAGC 1 cut(s) 479
BccI CCATC 3 cut(s) 9, 617, 784
BceAI ACGGC 1 cut(s) 267
BciT130I CCWGG 3 cut(s) 424, 459, 901
BclI TGATCA 3 cut(s) 31, 439, 724
BcnI CCSGG 4 cut(s) 61, 259, 473, 474
BfaI CTAG 5 cut(s) 120, 336, 689, 771, 795
BfmI CTRYAG 2 cut(s) 103, 139
BglII AGATCT 1 cut(s) 8
BisI GCNGC 1 cut(s) 493
BlnI CCTAGG 1 cut(s) 119
BlsI GCNGC 1 cut(s) 494
BmcAI AGTACT 2 cut(s) 586, 709
Bme1390I CCNGG 7 cut(s) 61, 259, 424, 459, 473, 474, 901
Bme18I GGWCC 2 cut(s) 153, 606
BmeT110I CYCGRG 1 cut(s) 472
BmgT120I GGNCC 2 cut(s) 153, 606
BmiI GGNNCC 5 cut(s) 166, 197, 324, 607, 863
BmrFI CCNGG 7 cut(s) 61, 259, 424, 459, 473, 474, 901
BmsI GCATC 2 cut(s) 349, 676
BpmI CTGGAG 1 cut(s) 883
Bpu10I CCTNAGC 1 cut(s) 523
BpuEI CTTGAG 1 cut(s) 514
BpuMI CCSGG 4 cut(s) 61, 259, 473, 474
Bsa29I ATCGAT 1 cut(s) 651
BsaAI YACGTR 1 cut(s) 371
BsaBI GATNNNNATC 3 cut(s) 33, 36, 657
BsaJI CCNNGG 5 cut(s) 59, 119, 249, 458, 472
BsaWI WCCGGW 2 cut(s) 171, 341
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 188, 824, 887
Bse1I ACTGG 2 cut(s) 155, 416
Bse3DI GCAATG 1 cut(s) 743
Bse8I GATNNNNATC 3 cut(s) 33, 36, 657
BseAI TCCGGA 2 cut(s) 171, 341
BseBI CCWGG 3 cut(s) 424, 459, 901
BseCI ATCGAT 1 cut(s) 651
BseDI CCNNGG 5 cut(s) 59, 119, 249, 458, 472
BseGI GGATG 3 cut(s) 20, 364, 581
BseJI GATNNNNATC 3 cut(s) 33, 36, 657
BseLI CCNNNNNNNGG 4 cut(s) 65, 188, 824, 887
BseMI GCAATG 1 cut(s) 743
BseMII CTCAG 1 cut(s) 537
BseNI ACTGG 2 cut(s) 155, 416
BseXI GCAGC 1 cut(s) 479
BshNI GGYRCC 1 cut(s) 195
BshVI ATCGAT 1 cut(s) 651
BsiHKAI GWGCWC 1 cut(s) 825
BsiHKCI CYCGRG 1 cut(s) 472
BsiSI CCGG 6 cut(s) 61, 172, 199, 258, 342, 473
BslFI GGGAC 2 cut(s) 164, 619
BslI CCNNNNNNNGG 4 cut(s) 65, 188, 824, 887
BsmFI GGGAC 2 cut(s) 164, 619
BsoBI CYCGRG 1 cut(s) 472
Bsp1286I GDGCHC 2 cut(s) 825, 866
Bsp13I TCCGGA 2 cut(s) 171, 341
BspACI CCGC 3 cut(s) 66, 162, 192
BspCNI CTCAG 1 cut(s) 536
BspDI ATCGAT 1 cut(s) 651
BspEI TCCGGA 2 cut(s) 171, 341
BspHI TCATGA 2 cut(s) 712, 838
BspLI GGNNCC 5 cut(s) 166, 197, 324, 607, 863
BspPI GGATC 6 cut(s) 317, 330, 442, 574, 835, 836
BspT107I GGYRCC 1 cut(s) 195
BsrDI GCAATG 1 cut(s) 743
BsrI ACTGG 2 cut(s) 155, 416
BssECI CCNNGG 5 cut(s) 59, 119, 249, 458, 472
BssT1I CCWWGG 1 cut(s) 119
Bst2UI CCWGG 3 cut(s) 424, 459, 901
Bst4CI ACNGT 2 cut(s) 107, 584
Bst6I CTCTTC 1 cut(s) 205
BstBAI YACGTR 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 520
BstDEI CTNAG 1 cut(s) 523
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 3 cut(s) 20, 364, 581
BstHHI GCGC 1 cut(s) 364
BstMWI GCNNNNNNNGC 3 cut(s) 54, 63, 745
BstNI CCWGG 3 cut(s) 424, 459, 901
BstNSI RCATGY 1 cut(s) 625
BstSCI CCNGG 7 cut(s) 59, 257, 422, 457, 471, 472, 899
BstSFI CTRYAG 2 cut(s) 103, 139
BstV1I GCAGC 1 cut(s) 479
BstX2I RGATCY 3 cut(s) 8, 322, 434
BstYI RGATCY 3 cut(s) 8, 322, 434
Bsu15I ATCGAT 1 cut(s) 651
BsuTUI ATCGAT 1 cut(s) 651
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 3 cut(s) 20, 364, 581
BtsI GCAGTG 1 cut(s) 688
BtsIMutI CAGTG 1 cut(s) 688
Cac8I GCNNGC 1 cut(s) 520
CaiI CAGNNNCTG 1 cut(s) 437
CciI TCATGA 2 cut(s) 712, 838
CfoI GCGC 1 cut(s) 364
Cfr13I GGNCC 2 cut(s) 153, 606
Cfr9I CCCGGG 1 cut(s) 472
ClaI ATCGAT 1 cut(s) 651
Csp6I GTAC 5 cut(s) 124, 585, 625, 692, 708
CviAII CATG 7 cut(s) 505, 622, 713, 805, 839, 882, 906
CviQI GTAC 5 cut(s) 124, 585, 625, 692, 708
DdeI CTNAG 1 cut(s) 523
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 866
Eco47I GGWCC 2 cut(s) 153, 606
Eco88I CYCGRG 1 cut(s) 472
EcoRII CCWGG 3 cut(s) 422, 457, 899
EcoT14I CCWWGG 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 866
ErhI CCWWGG 1 cut(s) 119
FaeI CATG 7 cut(s) 508, 625, 716, 808, 842, 885, 909
FaqI GGGAC 2 cut(s) 164, 619
FatI CATG 7 cut(s) 504, 621, 712, 804, 838, 881, 905
FauI CCCGC 1 cut(s) 185
FauNDI CATATG 2 cut(s) 44, 301
FbaI TGATCA 3 cut(s) 31, 439, 724
Fnu4HI GCNGC 1 cut(s) 493
FokI GGATG 3 cut(s) 27, 371, 588
FriOI GRGCYC 1 cut(s) 866
Fsp4HI GCNGC 1 cut(s) 493
FspBI CTAG 5 cut(s) 120, 336, 689, 771, 795
GlaI GCGC 1 cut(s) 363
GluI GCNGC 1 cut(s) 493
GsuI CTGGAG 1 cut(s) 883
HapII CCGG 6 cut(s) 61, 172, 199, 258, 342, 473
HhaI GCGC 1 cut(s) 364
Hin1II CATG 7 cut(s) 508, 625, 716, 808, 842, 885, 909
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HinfI GANTC 4 cut(s) 329, 347, 406, 716
HpaII CCGG 6 cut(s) 61, 172, 199, 258, 342, 473
Hpy188I TCNGA 7 cut(s) 188, 411, 439, 595, 663, 827, 832
Hpy99I CGWCG 1 cut(s) 188
HpyCH4III ACNGT 2 cut(s) 107, 584
HpyCH4IV ACGT 2 cut(s) 177, 370
HpyCH4V TGCA 6 cut(s) 132, 395, 495, 518, 701, 808
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 63, 745
HpyF3I CTNAG 1 cut(s) 523
HpySE526I ACGT 2 cut(s) 177, 370
Hsp92II CATG 7 cut(s) 508, 625, 716, 808, 842, 885, 909
HspAI GCGC 1 cut(s) 362
Kpn2I TCCGGA 2 cut(s) 171, 341
Ksp22I TGATCA 3 cut(s) 31, 439, 724
LmnI GCTCC 2 cut(s) 344, 861
Lsp1109I GCAGC 1 cut(s) 479
LweI GCATC 2 cut(s) 349, 676
MaeI CTAG 5 cut(s) 120, 336, 689, 771, 795
MaeII ACGT 2 cut(s) 177, 370
MaeIII GTNAC 2 cut(s) 89, 578
MboII GAAGA 3 cut(s) 214, 222, 560
MfeI CAATTG 1 cut(s) 285
MflI RGATCY 3 cut(s) 8, 322, 434
MhlI GDGCHC 2 cut(s) 825, 866
MluCI AATT 8 cut(s) 52, 285, 295, 306, 452, 464, 598, 856
MlyI GAGTC 1 cut(s) 356
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 4 cut(s) 179, 182, 206, 826
MroI TCCGGA 2 cut(s) 171, 341
MseI TTAA 5 cut(s) 227, 467, 561, 647, 854
MslI CAYNNNNRTG 1 cut(s) 681
MspI CCGG 6 cut(s) 61, 172, 199, 258, 342, 473
MspR9I CCNGG 7 cut(s) 61, 259, 424, 459, 473, 474, 901
MunI CAATTG 1 cut(s) 285
MvaI CCWGG 3 cut(s) 424, 459, 901
MwoI GCNNNNNNNGC 3 cut(s) 54, 63, 745
NciI CCSGG 4 cut(s) 61, 259, 473, 474
NdeI CATATG 2 cut(s) 44, 301
NlaIII CATG 7 cut(s) 508, 625, 716, 808, 842, 885, 909
NlaIV GGNNCC 5 cut(s) 166, 197, 324, 607, 863
NmuCI GTSAC 1 cut(s) 578
NspI RCATGY 1 cut(s) 625
PagI TCATGA 2 cut(s) 712, 838
PciI ACATGT 1 cut(s) 621
PfeI GAWTC 3 cut(s) 329, 406, 716
PflMI CCANNNNNTGG 1 cut(s) 887
PfoI TCCNGGA 2 cut(s) 422, 899
PkrI GCNGC 1 cut(s) 494
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
Ppu21I YACGTR 1 cut(s) 371
PscI ACATGT 1 cut(s) 621
PshBI ATTAAT 1 cut(s) 647
Psp6I CCWGG 3 cut(s) 422, 457, 899
PspGI CCWGG 3 cut(s) 422, 457, 899
PspN4I GGNNCC 5 cut(s) 166, 197, 324, 607, 863
PspPI GGNCC 2 cut(s) 153, 606
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 3 cut(s) 8, 322, 434
RsaI GTAC 5 cut(s) 125, 586, 626, 693, 709
RsaNI GTAC 5 cut(s) 124, 585, 625, 692, 708
RseI CAYNNNNRTG 1 cut(s) 681
SaqAI TTAA 5 cut(s) 227, 467, 561, 647, 854
SatI GCNGC 1 cut(s) 493
Sau96I GGNCC 2 cut(s) 153, 606
ScaI AGTACT 2 cut(s) 586, 709
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 7 cut(s) 61, 259, 424, 459, 473, 474, 901
SduI GDGCHC 2 cut(s) 825, 866
SetI ASST 8 cut(s) 125, 180, 224, 341, 373, 494, 814, 852
SfaNI GCATC 2 cut(s) 349, 676
SfcI CTRYAG 2 cut(s) 103, 139
SinI GGWCC 2 cut(s) 153, 606
SmaI CCCGGG 1 cut(s) 474
SmiMI CAYNNNNRTG 1 cut(s) 681
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
Sse9I AATT 8 cut(s) 52, 285, 295, 306, 452, 464, 598, 856
SsiI CCGC 3 cut(s) 66, 162, 192
SspMI CTAG 5 cut(s) 120, 336, 689, 771, 795
StyD4I CCNGG 7 cut(s) 59, 257, 422, 457, 471, 472, 899
StyI CCWWGG 1 cut(s) 119
TaaI ACNGT 2 cut(s) 107, 584
TaiI ACGT 2 cut(s) 180, 373
TaqI TCGA 2 cut(s) 651, 873
TasI AATT 8 cut(s) 52, 285, 295, 306, 452, 464, 598, 856
TatI WGTACW 4 cut(s) 584, 624, 691, 707
TfiI GAWTC 3 cut(s) 329, 406, 716
Tru1I TTAA 5 cut(s) 227, 467, 561, 647, 854
Tru9I TTAA 5 cut(s) 227, 467, 561, 647, 854
TscAI CASTG 1 cut(s) 688
TseFI GTSAC 1 cut(s) 578
TseI GCWGC 1 cut(s) 492
Tsp45I GTSAC 1 cut(s) 578
TspDTI ATGAA 4 cut(s) 288, 306, 521, 729
TspMI CCCGGG 1 cut(s) 472
TspRI CASTG 1 cut(s) 688
Van91I CCANNNNNTGG 1 cut(s) 887
VpaK11BI GGWCC 2 cut(s) 153, 606
VspI ATTAAT 1 cut(s) 647
XapI RAATTY 1 cut(s) 452
XceI RCATGY 1 cut(s) 625
XcmI CCANNNNNNNNNTGG 1 cut(s) 626
XmaI CCCGGG 1 cut(s) 472
XmaJI CCTAGG 1 cut(s) 119
XspI CTAG 5 cut(s) 120, 336, 689, 771, 795
ZrmI AGTACT 2 cut(s) 586, 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.