RchiOBHm_Chr3g0484531

DNA-(Apurinic or apyrimidinic site) lyase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
30872804 .. 30878360
5557 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1392 bp
ATGGGAGCAAACCCCACTGTTATCAAGGAGATTGAGAGTTTGAAAGGTGACCTCTCTAAGATTGAGGCAATGACAGTTGAACAACTCAGGACAACACTGAGGACTATCAGGGCCTCTGCCAAAGGTCGAAAATGCGAACTTGTGTCTTCATTGAAGTGCTTTCTGGAAAATAAGATAGATGGTGAAAGTTCCCAGGTAATAGAACAGCAAGTATCCTCCACCATTTGTGTTGAAACTGTATCAGCCAAAACCGAGACCGAACCTTTATCTAATGAAGACCAAGTTCAGAATCTCAACACTGTTTCCGATGTTCAATTACGTCAACGGAATAAGCGAACGTCATCATCTAAGAGTAAAACTGTCGATGGTGATGATAAGGTTGTAAAGAAAGAGAAGCTATCAATTGAATCAGATGAAGTTTCAGTTGGAAACCTCTCAAGGACAAGGAGGAAAGTATCTTCAAAAGCTGCGAGTATTACCGTCAAAACTGACGATAAGGGAGCTGAACCATGGACGGTTCTTGCGCACAAGAAACCTCAGAAAGATTGGATTCCTTATAATCCTAAAACCATGAGGCCCTCACAGCTTACTAGGGAGACTAAATTTATGAAGCTTATGTCGTGGAATGTCAATGGTTTAAGGGCATTATTGAAGTTAGAGGGATTCTCTGCTTTGCAACTTGCTGAAAGAGAAGATTTTGATGTATTATGTCTGCAGGAGACCAAATTGCAGGAGAAGGATGTTGAAGATGTGAAGAGGTCTCTCATAGACGGCTATGAGAATAGCTTCTGGACATGTAGTGTTTCCAAGCTCGGTTACTCGGGAACTGCGATTATCTCCCGAGTAAAGCCACTTTCAGTTAGCTATGGACTTGGCATGTCAGATCATGATAGCGAGGGGCGGATTGTAACAGTAGAGTTTGATTCATTTTACCTGATAAGTGGATATGTTCCTAATTCTGGAGATGGTTTGAGGAGACTGACATACAGGATTACAGAATGGGATCCATCTCTCAGTAATTACATGAAAGAGCTGGAAAACTCAAAGCCGGTAATTTTAACTGGTGATTTGAACTGTGCGCATCAAGAGATAGACATTTATAACCCAGCTGGAAATAGAAGAAGTGCTGGGTTTACAGATGAAGAACGGCAATCCTTCGGGACAAACTTTTTATCCAGAGGATTTGTGGATACATTTAGAAGGCAACACCCTGGTGTTGTTGGCTATACTTACTGGGGCTATCGACATGGTGGACGCAAATTTAACAGAGGGTGGCGGCTTGACTACTTCCTAGTCTCAGAATCTGTGGCTGACAAGGTTCATGACTCGTACATTTTGCCTCATATTAGTGGTAGCGATCATTGTCCTATAGGCCTTGTAATTAAGCTGTAG

Protein Analysis

463

Amino Acids

52.15

Weight (kDa)

8.47

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 206 - 454 3e-31 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 558, 1101
Acc16I TGCGCA 2 cut(s) 525, 1080
AciI CCGC 2 cut(s) 901, 1276
AclWI GGATC 2 cut(s) 998, 1011
AcsI RAATTY 2 cut(s) 602, 1259
AfaI GTAC 1 cut(s) 1331
AfiI CCNNNNNNNGG 1 cut(s) 959
AflIII ACRYGT 1 cut(s) 794
AjnI CCWGG 2 cut(s) 192, 1210
AjuI GAANNNNNNNTTGG 2 cut(s) 408, 440
AleI CACNNNNGTG 1 cut(s) 1212
Alw26I GTCTC 6 cut(s) 248, 590, 713, 765, 970, 1300
AlwI GGATC 2 cut(s) 998, 1011
AlwNI CAGNNNCTG 1 cut(s) 1304
Ama87I CYCGRG 2 cut(s) 820, 840
AoxI GGCC 3 cut(s) 111, 575, 1372
ApeKI GCWGC 1 cut(s) 467
ApoI RAATTY 2 cut(s) 602, 1259
Asp700I GAANNNNTTC 1 cut(s) 785
AspLEI GCGC 2 cut(s) 526, 1081
AspS9I GGNCC 2 cut(s) 111, 576
AsuHPI GGTGA 4 cut(s) 59, 194, 380, 1076
AvaI CYCGRG 2 cut(s) 820, 840
BamHI GGATCC 1 cut(s) 1003
BbsI GAAGAC 2 cut(s) 138, 282
BbvI GCAGC 1 cut(s) 454
BccI CCATC 4 cut(s) 173, 359, 959, 1015
BceAI ACGGC 2 cut(s) 787, 1163
BciT130I CCWGG 2 cut(s) 194, 1212
BciVI GTATCC 2 cut(s) 223, 1183
BcoDI GTCTC 6 cut(s) 248, 590, 713, 765, 970, 1300
BfaI CTAG 2 cut(s) 591, 1292
BfmI CTRYAG 3 cut(s) 713, 1368, 1388
BfuI GTATCC 2 cut(s) 223, 1183
BisI GCNGC 2 cut(s) 468, 1277
BlsI GCNGC 2 cut(s) 469, 1278
Bme1390I CCNGG 2 cut(s) 194, 1212
BmeT110I CYCGRG 2 cut(s) 820, 840
BmgT120I GGNCC 2 cut(s) 111, 576
BmiI GGNNCC 1 cut(s) 1005
BmrFI CCNGG 2 cut(s) 194, 1212
BmrI ACTGGG 1 cut(s) 1243
BmsI GCATC 1 cut(s) 1090
BmuI ACTGGG 1 cut(s) 1243
BpiI GAAGAC 2 cut(s) 138, 282
BplI GAGNNNNNCTC 2 cut(s) 650, 682
BpmI CTGGAG 1 cut(s) 981
BpuEI CTTGAG 1 cut(s) 421
BsaI GGTCTC 3 cut(s) 248, 713, 765
BsaJI CCNNGG 3 cut(s) 192, 509, 1210
Bsc4I CCNNNNNNNGG 1 cut(s) 959
Bse118I RCCGGY 1 cut(s) 1048
Bse1I ACTGG 2 cut(s) 1066, 1238
Bse3DI GCAATG 1 cut(s) 75
BseBI CCWGG 2 cut(s) 194, 1212
BseDI CCNNGG 3 cut(s) 192, 509, 1210
BseGI GGATG 1 cut(s) 745
BseLI CCNNNNNNNGG 1 cut(s) 959
BseMI GCAATG 1 cut(s) 75
BseMII CTCAG 5 cut(s) 89, 100, 551, 1027, 1311
BseNI ACTGG 2 cut(s) 1066, 1238
BseRI GAGGAG 1 cut(s) 988
BseXI GCAGC 1 cut(s) 454
BseYI CCCAGC 2 cut(s) 1105, 1127
BshFI GGCC 3 cut(s) 113, 577, 1374
BsiHKCI CYCGRG 2 cut(s) 820, 840
BsiSI CCGG 1 cut(s) 1049
BslFI GGGAC 1 cut(s) 1174
BslI CCNNNNNNNGG 1 cut(s) 959
BsmAI GTCTC 6 cut(s) 248, 590, 713, 765, 970, 1300
BsmFI GGGAC 1 cut(s) 1174
BsnI GGCC 3 cut(s) 113, 577, 1374
Bso31I GGTCTC 3 cut(s) 248, 713, 765
BsoBI CYCGRG 2 cut(s) 820, 840
Bsp143I GATC 3 cut(s) 883, 1003, 1357
Bsp19I CCATGG 1 cut(s) 509
BspACI CCGC 2 cut(s) 901, 1276
BspANI GGCC 3 cut(s) 113, 577, 1374
BspCNI CTCAG 5 cut(s) 90, 99, 550, 1026, 1310
BspHI TCATGA 2 cut(s) 886, 1321
BspLI GGNNCC 1 cut(s) 1005
BspMAI CTGCAG 1 cut(s) 717
BspPI GGATC 2 cut(s) 998, 1011
BspTNI GGTCTC 3 cut(s) 248, 713, 765
BsrDI GCAATG 1 cut(s) 75
BsrFI RCCGGY 1 cut(s) 1048
BsrI ACTGG 2 cut(s) 1066, 1238
BssAI RCCGGY 1 cut(s) 1048
BssECI CCNNGG 3 cut(s) 192, 509, 1210
BssMI GATC 3 cut(s) 883, 1003, 1357
BssT1I CCWWGG 1 cut(s) 509
Bst2UI CCWGG 2 cut(s) 194, 1212
Bst4CI ACNGT 9 cut(s) 19, 76, 238, 301, 361, 481, 517, 913, 1076
Bst6I CTCTTC 1 cut(s) 749
BstDEI CTNAG 7 cut(s) 57, 86, 98, 348, 537, 1013, 1297
BstDSI CCRYGG 1 cut(s) 509
BstEII GGTNACC 1 cut(s) 47
BstF5I GGATG 1 cut(s) 745
BstHHI GCGC 2 cut(s) 526, 1081
BstKTI GATC 3 cut(s) 886, 1006, 1360
BstMAI GTCTC 6 cut(s) 248, 590, 713, 765, 970, 1300
BstMBI GATC 3 cut(s) 883, 1003, 1357
BstMWI GCNNNNNNNGC 1 cut(s) 583
BstNI CCWGG 2 cut(s) 194, 1212
BstNSI RCATGY 2 cut(s) 798, 880
BstPI GGTNACC 1 cut(s) 47
BstSCI CCNGG 2 cut(s) 192, 1210
BstSFI CTRYAG 3 cut(s) 713, 1368, 1388
BstV1I GCAGC 1 cut(s) 454
BstV2I GAAGAC 2 cut(s) 138, 282
BstX2I RGATCY 1 cut(s) 1003
BstYI RGATCY 1 cut(s) 1003
BsuI GTATCC 2 cut(s) 223, 1183
BsuRI GGCC 3 cut(s) 113, 577, 1374
BtgI CCRYGG 1 cut(s) 509
BtsCI GGATG 1 cut(s) 745
BtsIMutI CAGTG 3 cut(s) 15, 95, 297
CaiI CAGNNNCTG 1 cut(s) 1304
CciI TCATGA 2 cut(s) 886, 1321
CfoI GCGC 2 cut(s) 526, 1081
Cfr10I RCCGGY 1 cut(s) 1048
Cfr13I GGNCC 2 cut(s) 111, 576
CseI GACGC 1 cut(s) 1263
Csp6I GTAC 1 cut(s) 1330
CviAII CATG 8 cut(s) 510, 571, 795, 877, 887, 1024, 1247, 1322
CviQI GTAC 1 cut(s) 1330
DdeI CTNAG 7 cut(s) 57, 86, 98, 348, 537, 1013, 1297
DpnI GATC 3 cut(s) 885, 1005, 1359
DpnII GATC 3 cut(s) 883, 1003, 1357
Eam1104I CTCTTC 1 cut(s) 749
EarI CTCTTC 1 cut(s) 749
EciI GGCGGA 1 cut(s) 916
Eco130I CCWWGG 1 cut(s) 509
Eco147I AGGCCT 1 cut(s) 1374
Eco31I GGTCTC 3 cut(s) 248, 713, 765
Eco88I CYCGRG 2 cut(s) 820, 840
Eco91I GGTNACC 1 cut(s) 47
EcoO109I RGGNCCY 2 cut(s) 111, 576
EcoO65I GGTNACC 1 cut(s) 47
EcoRII CCWGG 2 cut(s) 192, 1210
EcoT14I CCWWGG 1 cut(s) 509
ErhI CCWWGG 1 cut(s) 509
FaeI CATG 8 cut(s) 513, 574, 798, 880, 890, 1027, 1250, 1325
FaqI GGGAC 1 cut(s) 1174
FatI CATG 8 cut(s) 509, 570, 794, 876, 886, 1023, 1246, 1321
Fnu4HI GCNGC 2 cut(s) 468, 1277
FokI GGATG 1 cut(s) 752
Fsp4HI GCNGC 2 cut(s) 468, 1277
FspAI RTGCGCAY 1 cut(s) 1080
FspBI CTAG 2 cut(s) 591, 1292
FspI TGCGCA 2 cut(s) 525, 1080
GlaI GCGC 2 cut(s) 525, 1080
GluI GCNGC 2 cut(s) 468, 1277
GsaI CCCAGC 2 cut(s) 1109, 1131
GsuI CTGGAG 1 cut(s) 981
HaeIII GGCC 3 cut(s) 113, 577, 1374
HapII CCGG 1 cut(s) 1049
HgaI GACGC 1 cut(s) 1263
HhaI GCGC 2 cut(s) 526, 1081
Hin1II CATG 8 cut(s) 513, 574, 798, 880, 890, 1027, 1250, 1325
Hin6I GCGC 2 cut(s) 524, 1079
HinP1I GCGC 2 cut(s) 524, 1079
HincII GTYRAC 1 cut(s) 323
HindII GTYRAC 1 cut(s) 323
HindIII AAGCTT 1 cut(s) 611
HinfI GANTC 7 cut(s) 289, 407, 550, 663, 923, 1301, 1325
HpaII CCGG 1 cut(s) 1049
HphI GGTGA 4 cut(s) 59, 194, 380, 1076
Hpy166II GTNNAC 3 cut(s) 323, 1134, 1253
Hpy188I TCNGA 6 cut(s) 288, 307, 412, 540, 883, 1300
Hpy8I GTNNAC 3 cut(s) 323, 1134, 1253
HpyAV CCTTC 3 cut(s) 730, 1165, 1194
HpyCH4III ACNGT 9 cut(s) 19, 76, 238, 301, 361, 481, 517, 913, 1076
HpyCH4IV ACGT 2 cut(s) 319, 338
HpyCH4V TGCA 3 cut(s) 676, 715, 730
HpyF10VI GCNNNNNNNGC 1 cut(s) 583
HpyF3I CTNAG 7 cut(s) 57, 86, 98, 348, 537, 1013, 1297
HpySE526I ACGT 2 cut(s) 319, 338
Hsp92II CATG 8 cut(s) 513, 574, 798, 880, 890, 1027, 1250, 1325
HspAI GCGC 2 cut(s) 524, 1079
Kzo9I GATC 3 cut(s) 883, 1003, 1357
LmnI GCTCC 2 cut(s) 5, 500
Lsp1109I GCAGC 1 cut(s) 454
LweI GCATC 1 cut(s) 1090
MaeI CTAG 2 cut(s) 591, 1292
MaeII ACGT 2 cut(s) 319, 338
MaeIII GTNAC 3 cut(s) 47, 815, 907
MalI GATC 3 cut(s) 885, 1005, 1359
MboI GATC 3 cut(s) 883, 1003, 1357
MboII GAAGA 8 cut(s) 138, 287, 450, 704, 758, 766, 1131, 1154
MfeI CAATTG 1 cut(s) 402
MflI RGATCY 1 cut(s) 1003
MluCI AATT 9 cut(s) 314, 402, 602, 725, 955, 1018, 1053, 1259, 1380
MlyI GAGTC 1 cut(s) 1319
MmeI TCCRAC 1 cut(s) 406
MroXI GAANNNNTTC 1 cut(s) 785
MseI TTAA 4 cut(s) 638, 1058, 1263, 1383
MslI CAYNNNNRTG 3 cut(s) 154, 1212, 1347
MspA1I CMGCKG 1 cut(s) 1109
MspI CCGG 1 cut(s) 1049
MspR9I CCNGG 2 cut(s) 194, 1212
MunI CAATTG 1 cut(s) 402
MvaI CCWGG 2 cut(s) 194, 1212
MwoI GCNNNNNNNGC 1 cut(s) 583
NcoI CCATGG 1 cut(s) 509
NdeII GATC 3 cut(s) 883, 1003, 1357
NlaIII CATG 8 cut(s) 513, 574, 798, 880, 890, 1027, 1250, 1325
NlaIV GGNNCC 1 cut(s) 1005
NmuCI GTSAC 1 cut(s) 47
NsbI TGCGCA 2 cut(s) 525, 1080
NspI RCATGY 2 cut(s) 798, 880
OliI CACNNNNGTG 1 cut(s) 1212
PagI TCATGA 2 cut(s) 886, 1321
PceI AGGCCT 1 cut(s) 1374
PciI ACATGT 1 cut(s) 794
PcsI WCGNNNNNNNCGW 2 cut(s) 331, 827
PdmI GAANNNNTTC 1 cut(s) 785
PfeI GAWTC 6 cut(s) 289, 407, 550, 663, 923, 1301
PkrI GCNGC 2 cut(s) 469, 1278
PleI GAGTC 1 cut(s) 1319
PpsI GAGTC 1 cut(s) 1319
PscI ACATGT 1 cut(s) 794
PsiI TTATAA 2 cut(s) 558, 1101
Psp6I CCWGG 2 cut(s) 192, 1210
PspEI GGTNACC 1 cut(s) 47
PspFI CCCAGC 2 cut(s) 1105, 1127
PspGI CCWGG 2 cut(s) 192, 1210
PspN4I GGNNCC 1 cut(s) 1005
PspPI GGNCC 2 cut(s) 111, 576
PstI CTGCAG 1 cut(s) 717
PstNI CAGNNNCTG 1 cut(s) 1304
PsuI RGATCY 1 cut(s) 1003
PvuII CAGCTG 1 cut(s) 1109
RsaI GTAC 1 cut(s) 1331
RsaNI GTAC 1 cut(s) 1330
RseI CAYNNNNRTG 3 cut(s) 154, 1212, 1347
SaqAI TTAA 4 cut(s) 638, 1058, 1263, 1383
SatI GCNGC 2 cut(s) 468, 1277
Sau3AI GATC 3 cut(s) 883, 1003, 1357
Sau96I GGNCC 2 cut(s) 111, 576
SchI GAGTC 1 cut(s) 1319
ScrFI CCNGG 2 cut(s) 194, 1212
SfaNI GCATC 1 cut(s) 1090
SfcI CTRYAG 3 cut(s) 713, 1368, 1388
SmiMI CAYNNNNRTG 3 cut(s) 154, 1212, 1347
SmlI CTYRAG 1 cut(s) 436
SmoI CTYRAG 1 cut(s) 436
Sse9I AATT 9 cut(s) 314, 402, 602, 725, 955, 1018, 1053, 1259, 1380
SseBI AGGCCT 1 cut(s) 1374
SsiI CCGC 2 cut(s) 901, 1276
SspMI CTAG 2 cut(s) 591, 1292
StuI AGGCCT 1 cut(s) 1374
StyD4I CCNGG 2 cut(s) 192, 1210
StyI CCWWGG 1 cut(s) 509
TaaI ACNGT 9 cut(s) 19, 76, 238, 301, 361, 481, 517, 913, 1076
TaiI ACGT 2 cut(s) 322, 341
TaqI TCGA 3 cut(s) 127, 363, 1243
TaqII GACCGA 1 cut(s) 272
TasI AATT 9 cut(s) 314, 402, 602, 725, 955, 1018, 1053, 1259, 1380
TauI GCSGC 1 cut(s) 1279
TfiI GAWTC 6 cut(s) 289, 407, 550, 663, 923, 1301
Tru1I TTAA 4 cut(s) 638, 1058, 1263, 1383
Tru9I TTAA 4 cut(s) 638, 1058, 1263, 1383
TscAI CASTG 3 cut(s) 22, 102, 304
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 1 cut(s) 467
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 8 cut(s) 138, 288, 429, 623, 915, 1040, 1155, 1310
TspGWI ACGGA 1 cut(s) 340
TspRI CASTG 3 cut(s) 22, 102, 304
XapI RAATTY 2 cut(s) 602, 1259
XceI RCATGY 2 cut(s) 798, 880
XcmI CCANNNNNNNNNTGG 1 cut(s) 1183
XmnI GAANNNNTTC 1 cut(s) 785
XspI CTAG 2 cut(s) 591, 1292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.