RchiOBHm_Chr3g0484901

VQ motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0017123
Physical Location & Seq
Forward (+)
31403654 .. 31404653
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 564 bp
ATGGAGACGATGGAAATGGGAGGTGATTGCAAACCCTTGACTACATTTGTTCATGCAGACACGAGCACGTTTCGAGAAGTAGTGCAGCGTTTAACAGGGGCAGGACCTAATCAAACTCAAACTCAAACTCAACATGCAAAGAGTAACGCGGCCAACAGCATAAGCTCAAGGAAAACGACGACGGCCTCATCAACGAGCAAGCTTCATGAGAGAAGGCAATACATCAAACCCAAGCTTGATATAGTTAAACCTACCATCACCAACAGCCAATTCAAATCACCAACTCCCTTGGTCAGCCCTTCTACAATTTTCTCAAAGCTCTCGATAGTCGAACAAGAAAACAGAGGAGGATCACCAGCAGCTGCAGCAAAGTCGACGGTTGGAACATATGAACATGAAGATGAAAATAATAGGAATAGTCATTCAGAAGAAGAGAAAGCCATTCAAGAGAGGAGATTTTACTTGCGTCCATCACCACAGCCGGAAAAGTCCCCAAGGTCACCACCAGAGTTGCTTACCTTGTTTCCTCTAACATCTCCCACATCAAAACTTCAAAATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

187

Amino Acids

20.69

Weight (kDa)

9.41

Isoelectric Point (pI)

53.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 14 - 36 6e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08480 AT5G08480 AT5G08480
fragaria_vesca FvH4_1g25800
malus_domestica MD15G1140300.v1.1
prunus_persica Prupe.4G286700_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0484901
rosa_laevigata RLG00000023187
rosa_multiflora Rmu_sc0005946.1_g000005
rosa_roxburghii Rroxscaffold_6G00397370
rosa_samantha Rh3BG300200 Rh3CG297900
rosa_wichuraiana Rw3G023640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 374
AccII CGCG 1 cut(s) 149
AciI CCGC 1 cut(s) 149
AclWI GGATC 1 cut(s) 358
AcoI YGGCCR 1 cut(s) 150
AgsI TTSAA 3 cut(s) 274, 446, 554
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AluBI AGCT 5 cut(s) 165, 202, 235, 319, 362
AluI AGCT 5 cut(s) 165, 202, 235, 319, 362
Alw21I GWGCWC 1 cut(s) 68
AlwI GGATC 1 cut(s) 358
AlwNI CAGNNNCTG 1 cut(s) 362
AoxI GGCC 2 cut(s) 150, 183
ApeKI GCWGC 4 cut(s) 85, 359, 362, 365
AspS9I GGNCC 1 cut(s) 104
AsuHPI GGTGA 6 cut(s) 35, 250, 270, 345, 465, 492
AvaII GGWCC 1 cut(s) 104
BauI CACGAG 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 4 cut(s) 97, 349, 371, 377
BccI CCATC 3 cut(s) 4, 263, 478
BceAI ACGGC 1 cut(s) 198
BcgI CGANNNNNNTGC 2 cut(s) 354, 388
BfmI CTRYAG 1 cut(s) 363
BisI GCNGC 5 cut(s) 86, 150, 360, 363, 366
BlsI GCNGC 5 cut(s) 87, 151, 361, 364, 367
Bme18I GGWCC 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 151
BsaJI CCNNGG 2 cut(s) 288, 494
BseDI CCNNGG 2 cut(s) 288, 494
BseRI GAGGAG 2 cut(s) 360, 466
BseXI GCAGC 4 cut(s) 97, 349, 371, 377
BsgI GTGCAG 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 2 cut(s) 152, 185
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 482
BslFI GGGAC 1 cut(s) 475
BsmFI GGGAC 1 cut(s) 475
BsnI GGCC 2 cut(s) 152, 185
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 350
BspACI CCGC 1 cut(s) 149
BspANI GGCC 2 cut(s) 152, 185
BspFNI CGCG 1 cut(s) 149
BspHI TCATGA 1 cut(s) 205
BspMAI CTGCAG 1 cut(s) 367
BspPI GGATC 1 cut(s) 358
BssECI CCNNGG 2 cut(s) 288, 494
BssMI GATC 1 cut(s) 350
BssSI CACGAG 1 cut(s) 61
BssT1I CCWWGG 2 cut(s) 288, 494
Bst2BI CACGAG 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 379
Bst6I CTCTTC 1 cut(s) 426
BstC8I GCNNGC 1 cut(s) 200
BstEII GGTNACC 1 cut(s) 498
BstFNI CGCG 1 cut(s) 149
BstKTI GATC 1 cut(s) 353
BstMBI GATC 1 cut(s) 350
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstNSI RCATGY 1 cut(s) 137
BstPI GGTNACC 1 cut(s) 498
BstSFI CTRYAG 1 cut(s) 363
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 4 cut(s) 97, 349, 371, 377
BsuRI GGCC 2 cut(s) 152, 185
Cac8I GCNNGC 1 cut(s) 200
CaiI CAGNNNCTG 1 cut(s) 362
CciI TCATGA 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 104
CseI GACGC 1 cut(s) 455
CspCI CAANNNNNGTGG 2 cut(s) 492, 527
CviAII CATG 5 cut(s) 53, 134, 206, 395, 561
DpnI GATC 1 cut(s) 352
DpnII GATC 1 cut(s) 350
EaeI YGGCCR 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco130I CCWWGG 2 cut(s) 288, 494
Eco47I GGWCC 1 cut(s) 104
Eco91I GGTNACC 1 cut(s) 498
EcoO109I RGGNCCY 1 cut(s) 104
EcoO65I GGTNACC 1 cut(s) 498
EcoT14I CCWWGG 2 cut(s) 288, 494
ErhI CCWWGG 2 cut(s) 288, 494
FaeI CATG 5 cut(s) 56, 137, 209, 398, 564
FaiI YATR 9 cut(s) 54, 135, 161, 207, 242, 388, 390, 396, 562
FaqI GGGAC 1 cut(s) 475
FatI CATG 5 cut(s) 52, 133, 205, 394, 560
FauNDI CATATG 1 cut(s) 388
FblI GTMKAC 1 cut(s) 374
Fnu4HI GCNGC 5 cut(s) 86, 150, 360, 363, 366
Fsp4HI GCNGC 5 cut(s) 86, 150, 360, 363, 366
GluI GCNGC 5 cut(s) 86, 150, 360, 363, 366
HaeIII GGCC 2 cut(s) 152, 185
HapII CCGG 1 cut(s) 482
HgaI GACGC 1 cut(s) 455
Hin1II CATG 5 cut(s) 56, 137, 209, 398, 564
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HindIII AAGCTT 2 cut(s) 200, 233
HpaII CCGG 1 cut(s) 482
HphI GGTGA 6 cut(s) 35, 250, 270, 345, 465, 492
Hpy166II GTNNAC 1 cut(s) 375
Hpy188I TCNGA 1 cut(s) 427
Hpy188III TCNNGA 4 cut(s) 74, 206, 322, 446
Hpy8I GTNNAC 1 cut(s) 375
Hpy99I CGWCG 3 cut(s) 181, 184, 379
HpyAV CCTTC 2 cut(s) 207, 309
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 5 cut(s) 30, 56, 85, 137, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
HpySE526I ACGT 1 cut(s) 68
Hsp92II CATG 5 cut(s) 56, 137, 209, 398, 564
Kzo9I GATC 1 cut(s) 350
LpnPI CCDG 5 cut(s) 81, 87, 369, 495, 519
Lsp1109I GCAGC 4 cut(s) 97, 349, 371, 377
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 2 cut(s) 143, 498
MalI GATC 1 cut(s) 352
MboI GATC 1 cut(s) 350
MboII GAAGA 3 cut(s) 410, 440, 443
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 2 cut(s) 269, 306
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 6 cut(s) 14, 196, 338, 341, 444, 537
MseI TTAA 2 cut(s) 92, 246
MslI CAYNNNNRTG 1 cut(s) 399
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 1 cut(s) 482
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 365
NdeI CATATG 1 cut(s) 388
NdeII GATC 1 cut(s) 350
NlaIII CATG 5 cut(s) 56, 137, 209, 398, 564
NmuCI GTSAC 1 cut(s) 498
NspI RCATGY 1 cut(s) 137
PagI TCATGA 1 cut(s) 205
PkrI GCNGC 5 cut(s) 87, 151, 361, 364, 367
PpuMI RGGWCCY 1 cut(s) 104
Psp5II RGGWCCY 1 cut(s) 104
PspEI GGTNACC 1 cut(s) 498
PspPI GGNCC 1 cut(s) 104
PspPPI RGGWCCY 1 cut(s) 104
PstI CTGCAG 1 cut(s) 367
PstNI CAGNNNCTG 1 cut(s) 362
PvuII CAGCTG 1 cut(s) 362
RseI CAYNNNNRTG 1 cut(s) 399
SalI GTCGAC 1 cut(s) 373
SaqAI TTAA 2 cut(s) 92, 246
SatI GCNGC 5 cut(s) 86, 150, 360, 363, 366
Sau3AI GATC 1 cut(s) 350
Sau96I GGNCC 1 cut(s) 104
SduI GDGCHC 1 cut(s) 68
SfcI CTRYAG 1 cut(s) 363
SinI GGWCC 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 2 cut(s) 269, 306
SsiI CCGC 1 cut(s) 149
StyI CCWWGG 2 cut(s) 288, 494
TaaI ACNGT 1 cut(s) 379
TaiI ACGT 1 cut(s) 71
TaqI TCGA 4 cut(s) 73, 323, 330, 374
TasI AATT 2 cut(s) 269, 306
TauI GCSGC 1 cut(s) 152
Tru1I TTAA 2 cut(s) 92, 246
Tru9I TTAA 2 cut(s) 92, 246
TseFI GTSAC 1 cut(s) 498
TseI GCWGC 4 cut(s) 85, 359, 362, 365
Tsp45I GTSAC 1 cut(s) 498
TspDTI ATGAA 5 cut(s) 41, 194, 405, 411, 417
VpaK11BI GGWCC 1 cut(s) 104
XceI RCATGY 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.