RchiOBHm_Chr3g0491561

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016997
Physical Location & Seq
Forward (+)
38286896 .. 38291144
4249 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 684 bp
ATGGAGGTCCAAACAGATGACCAGCTGCCAGCACAGCAGCCTGTTGAAAAATGTAGCATTAGGCAGGTATCGAGAGTGGAAGAAACAGGAGGACAGCGAGAAATAATTAGAGAAGAAGAGGAGGTGCAAGCTATCGACGAGCAGCCTTCACCACCGCCTGCTGAACAATGTAGCATTGGGCATGCATGGAGTGAGGAAGAAGTTGGAGCACTCAACAAAGGATTGGGTAGTGAGGTTGACGTCCAAATCATTGAGGTGAAGCAATCACAATCCTCAGTTGCTGCAGGCTCTAGGCGCTCTATCCAAGCTTTGGGGTTTCTGGAAAGTTATCTCGGCGAGCACCAACAAAGCTTGGCCAGTACCAACGAAGCTTCAATCCCCAATTTGTATGAGGTTGCTCAAGCAAAGGCCAAAATTCAAAGGATTTCCGCTCTCTCTATTGATGAAGTCATGGAATCTGAGTGTGTTCAAAGCTTCAAATCATCGTTGGAATTTTTACTCAAATCTGACGACACAGCTGGAGCTCAGTCGGCAAATATTGAACATGTCTTGGGCAAGCTGGCTTTGTTCGAGTTTAAATATTCCACAGCTAGCAAAATCACCGATGAAGTGAATGAAGTGTCTAAAAGGAAGTTAGAGCTGGAACAAGAAGTGAAATACTATACTATCTGCTCATCGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

227

Amino Acids

25.04

Weight (kDa)

4.58

Isoelectric Point (pI)

60.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 243
Acc36I ACCTGC 1 cut(s) 55
AccB7I CCANNNNNTGG 1 cut(s) 310
AccBSI CCGCTC 1 cut(s) 431
AciI CCGC 2 cut(s) 155, 429
AcoI YGGCCR 1 cut(s) 354
AcsI RAATTY 2 cut(s) 414, 491
AcyI GRCGYC 1 cut(s) 240
AfaI GTAC 1 cut(s) 361
AfiI CCNNNNNNNGG 1 cut(s) 310
AflIII ACRYGT 1 cut(s) 544
AgsI TTSAA 6 cut(s) 47, 375, 419, 470, 478, 542
Alw21I GWGCWC 3 cut(s) 211, 342, 526
AlwNI CAGNNNCTG 1 cut(s) 281
AoxI GGCC 2 cut(s) 354, 408
ApeKI GCWGC 4 cut(s) 25, 37, 142, 281
ApoI RAATTY 2 cut(s) 414, 491
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 7
AsuHPI GGTGA 3 cut(s) 141, 268, 592
AsuNHI GCTAGC 1 cut(s) 590
AvaII GGWCC 1 cut(s) 7
BalI TGGCCA 1 cut(s) 356
BanII GRGCYC 1 cut(s) 526
Bbv12I GWGCWC 3 cut(s) 211, 342, 526
BbvI GCAGC 4 cut(s) 12, 49, 154, 268
BfaI CTAG 2 cut(s) 291, 591
BfmI CTRYAG 1 cut(s) 282
BfoI RGCGCY 1 cut(s) 298
BfuAI ACCTGC 1 cut(s) 55
BisI GCNGC 4 cut(s) 26, 38, 143, 282
BlsI GCNGC 4 cut(s) 27, 39, 144, 283
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 7
BmtI GCTAGC 1 cut(s) 594
BpmI CTGGAG 1 cut(s) 540
BpuEI CTTGAG 1 cut(s) 384
Bsa29I ATCGAT 1 cut(s) 677
BsaHI GRCGYC 1 cut(s) 240
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 357
BseCI ATCGAT 1 cut(s) 677
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMII CTCAG 3 cut(s) 288, 450, 539
BseNI ACTGG 1 cut(s) 357
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 4 cut(s) 12, 49, 154, 268
BshFI GGCC 2 cut(s) 356, 410
BshVI ATCGAT 1 cut(s) 677
BsiHKAI GWGCWC 3 cut(s) 211, 342, 526
BslI CCNNNNNNNGG 1 cut(s) 310
BsnI GGCC 2 cut(s) 356, 410
Bsp1286I GDGCHC 3 cut(s) 211, 342, 526
Bsp143I GATC 1 cut(s) 678
BspACI CCGC 2 cut(s) 155, 429
BspANI GGCC 2 cut(s) 356, 410
BspCNI CTCAG 3 cut(s) 287, 451, 538
BspDI ATCGAT 1 cut(s) 677
BspMAI CTGCAG 1 cut(s) 286
BspMI ACCTGC 1 cut(s) 55
BspOI GCTAGC 1 cut(s) 594
BsrBI CCGCTC 1 cut(s) 431
BsrI ACTGG 1 cut(s) 357
BssMI GATC 1 cut(s) 678
BssNI GRCGYC 1 cut(s) 240
Bst6I CTCTTC 1 cut(s) 111
BstACI GRCGYC 1 cut(s) 240
BstC8I GCNNGC 9 cut(s) 30, 129, 159, 183, 286, 338, 557, 561, 592
BstDEI CTNAG 3 cut(s) 274, 459, 525
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 1 cut(s) 681
BstMBI GATC 1 cut(s) 678
BstMWI GCNNNNNNNGC 3 cut(s) 34, 294, 530
BstNSI RCATGY 2 cut(s) 185, 548
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 4 cut(s) 12, 49, 154, 268
Bsu15I ATCGAT 1 cut(s) 677
BsuRI GGCC 2 cut(s) 356, 410
BsuTUI ATCGAT 1 cut(s) 677
BveI ACCTGC 1 cut(s) 55
Cac8I GCNNGC 9 cut(s) 30, 129, 159, 183, 286, 338, 557, 561, 592
CaiI CAGNNNCTG 1 cut(s) 281
CfoI GCGC 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 7
ClaI ATCGAT 1 cut(s) 677
Csp6I GTAC 1 cut(s) 360
CviAII CATG 4 cut(s) 182, 186, 451, 545
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 3 cut(s) 274, 459, 525
DpnI GATC 1 cut(s) 680
DpnII GATC 1 cut(s) 678
DraI TTTAAA 1 cut(s) 577
EaeI YGGCCR 1 cut(s) 354
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Ecl136II GAGCTC 1 cut(s) 524
Eco24I GRGCYC 1 cut(s) 526
Eco47I GGWCC 1 cut(s) 7
Eco53kI GAGCTC 1 cut(s) 524
EcoICRI GAGCTC 1 cut(s) 524
EcoT22I ATGCAT 1 cut(s) 187
EcoT38I GRGCYC 1 cut(s) 526
FaeI CATG 4 cut(s) 185, 189, 454, 548
FaiI YATR 6 cut(s) 183, 187, 390, 452, 546, 663
FatI CATG 4 cut(s) 181, 185, 450, 544
Fnu4HI GCNGC 4 cut(s) 26, 38, 143, 282
FriOI GRGCYC 1 cut(s) 526
Fsp4HI GCNGC 4 cut(s) 26, 38, 143, 282
FspBI CTAG 2 cut(s) 291, 591
GlaI GCGC 1 cut(s) 296
GluI GCNGC 4 cut(s) 26, 38, 143, 282
GsuI CTGGAG 1 cut(s) 540
HaeII RGCGCY 1 cut(s) 298
HaeIII GGCC 2 cut(s) 356, 410
HhaI GCGC 1 cut(s) 297
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 4 cut(s) 185, 189, 454, 548
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 4 cut(s) 306, 349, 369, 472
HinfI GANTC 1 cut(s) 455
HphI GGTGA 3 cut(s) 141, 268, 592
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 3 cut(s) 460, 508, 683
Hpy188III TCNNGA 2 cut(s) 72, 320
Hpy8I GTNNAC 1 cut(s) 238
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 156
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 3 cut(s) 127, 185, 284
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 294, 530
HpyF3I CTNAG 3 cut(s) 274, 459, 525
HpySE526I ACGT 1 cut(s) 240
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 4 cut(s) 185, 189, 454, 548
HspAI GCGC 1 cut(s) 295
Kzo9I GATC 1 cut(s) 678
LmnI GCTCC 2 cut(s) 206, 521
Lsp1109I GCAGC 4 cut(s) 12, 49, 154, 268
MaeI CTAG 2 cut(s) 291, 591
MaeII ACGT 1 cut(s) 240
MalI GATC 1 cut(s) 680
MbiI CCGCTC 1 cut(s) 431
MboI GATC 1 cut(s) 678
MboII GAAGA 4 cut(s) 92, 125, 128, 209
MhlI GDGCHC 3 cut(s) 211, 342, 526
MlsI TGGCCA 1 cut(s) 356
MluCI AATT 4 cut(s) 105, 382, 414, 491
MluNI TGGCCA 1 cut(s) 356
MmeI TCCRAC 2 cut(s) 184, 468
MnlI CCTC 8 cut(s) 83, 112, 115, 187, 226, 247, 283, 385
Mox20I TGGCCA 1 cut(s) 356
Mph1103I ATGCAT 1 cut(s) 187
MscI TGGCCA 1 cut(s) 356
MseI TTAA 1 cut(s) 576
MslI CAYNNNNRTG 1 cut(s) 254
Msp20I TGGCCA 1 cut(s) 356
MspA1I CMGCKG 2 cut(s) 25, 518
MwoI GCNNNNNNNGC 3 cut(s) 34, 294, 530
NdeII GATC 1 cut(s) 678
NheI GCTAGC 1 cut(s) 590
NlaIII CATG 4 cut(s) 185, 189, 454, 548
NmeAIII GCCGAG 1 cut(s) 312
NsiI ATGCAT 1 cut(s) 187
NspI RCATGY 2 cut(s) 185, 548
PaeI GCATGC 1 cut(s) 185
PciI ACATGT 1 cut(s) 544
PfeI GAWTC 1 cut(s) 455
PflMI CCANNNNNTGG 1 cut(s) 310
PkrI GCNGC 4 cut(s) 27, 39, 144, 283
PscI ACATGT 1 cut(s) 544
Psp124BI GAGCTC 1 cut(s) 526
PspPI GGNCC 1 cut(s) 7
PstI CTGCAG 1 cut(s) 286
PstNI CAGNNNCTG 1 cut(s) 281
PvuII CAGCTG 2 cut(s) 25, 518
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
RseI CAYNNNNRTG 1 cut(s) 254
SacI GAGCTC 1 cut(s) 526
SaqAI TTAA 1 cut(s) 576
SatI GCNGC 4 cut(s) 26, 38, 143, 282
Sau3AI GATC 1 cut(s) 678
Sau96I GGNCC 1 cut(s) 7
SduI GDGCHC 3 cut(s) 211, 342, 526
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 1 cut(s) 7
SmiMI CAYNNNNRTG 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
SphI GCATGC 1 cut(s) 185
Sse9I AATT 4 cut(s) 105, 382, 414, 491
SsiI CCGC 2 cut(s) 155, 429
SspI AATATT 2 cut(s) 538, 581
SspMI CTAG 2 cut(s) 291, 591
SstI GAGCTC 1 cut(s) 526
TaiI ACGT 1 cut(s) 243
TaqI TCGA 4 cut(s) 71, 135, 570, 677
TasI AATT 4 cut(s) 105, 382, 414, 491
TfiI GAWTC 1 cut(s) 455
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TseI GCWGC 4 cut(s) 25, 37, 142, 281
TspDTI ATGAA 3 cut(s) 459, 621, 630
Van91I CCANNNNNTGG 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 7
XapI RAATTY 2 cut(s) 414, 491
XceI RCATGY 2 cut(s) 185, 548
XspI CTAG 2 cut(s) 291, 591
ZraI GACGTC 1 cut(s) 241
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.