Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0016997

Physical Location & Seq

Genomic Coordinates Forward (+)

35496676 .. 35538867

Gene Structure 42192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG335100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAAGAATGTGCAAGGAGGTGCTAAGATGGGGAGAAGGAGACAAGAGGGTTGTGAAAATGGTGATGGAGGCGAGAAGAAACGGAGCCGAACAGGTCTGAGGAGCCATAAAGTTGACAACTTTAGTGAGTTAGAGTGGGAGCGGGGGAAGGGTAAAAGGGGTGGGAGGGTTAGGGTCAGTTTATCAAGTGGTAAGAAGCCGCAGGGAGAGCCAGAGAATGTTGTTGGGTCGTCGGAAGCTACGGTGCAGACAACCCAGTTCTTGGTTTTTCACCGGCGTACTGCATTTGTCACCGAGCCTCTGAAGAACTTTGAATTGAGAAATTGTGAAAATGAAAGAATTGAGCATGTCGAGAGAGAGGAAACCGGAGAAAGACAGAAAGAAGGGAGGGAAGAAGAAATGGAGGTCCAAACAGTTGACCAGCTGCCAGCACAGCAGCCTGTTGAAAAATGTAGCATTAGGCAGGTATCGAGAGTGGAAGAAACAGGAGGACAGCGAGAAATAATTAGAGAAGAAGATGAGGTGCAAGCTATCGAAGAGCAGCCTTCACCACCGCCTGCTGAACAATGTAGCATTGGGCATGCATGGAGTGAGGAAGAAGTTGGAGCACTCAACAAAGGATTGGGTAGTGAGGTTGACGTCCAAATCATTGAGGTGAAGCAATCACAATCCTCAGTTGCTGCAGGCGCGCTCTATCCAAGCTTTGGGGTTTCTGGAAAGTTATCTCGGCCATCACGAAGAAAGCTTGGCCAGCACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

28.26

Weight (kDa)

6.08

Isoelectric Point (pI)

69.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016997)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0491561
rosa_laevigata	RLG00000022836
rosa_multiflora	Rmu_sc0015320.1_g000002
rosa_roxburghii	Rroxscaffold_6G00392900
rosa_rugosa	Rorug03G0250300
rosa_samantha	Rh3BG335100 Rh3BG335200 Rh3BG335700 Rh3CG331900 Rh3CG332000 Rh3CG332100 Rh3DG333600 Rh3DG333700 Rh3DG333800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	642
Acc36I	ACCTGC	1 cut(s)	454
AccB7I	CCANNNNNTGG	2 cut(s)	262, 704
AccBSI	CCGCTC	1 cut(s)	142
AccII	CGCG	1 cut(s)	689
AciI	CCGC	3 cut(s)	142, 200, 554
AcoI	YGGCCR	2 cut(s)	728, 748
AcuI	CTGAAG	1 cut(s)	323
AcyI	GRCGYC	1 cut(s)	639
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	2 cut(s)	262, 704
AgsI	TTSAA	2 cut(s)	314, 446
AluBI	AGCT	5 cut(s)	239, 424, 530, 702, 745
AluI	AGCT	5 cut(s)	239, 424, 530, 702, 745
Alw21I	GWGCWC	1 cut(s)	610
Alw26I	GTCTC	1 cut(s)	34
AlwNI	CAGNNNCTG	1 cut(s)	680
AoxI	GGCC	2 cut(s)	728, 748
ApeKI	GCWGC	4 cut(s)	424, 436, 541, 680
AspLEI	GCGC	2 cut(s)	689, 691
AspS9I	GGNCC	1 cut(s)	406
AsuHPI	GGTGA	5 cut(s)	74, 263, 283, 540, 667
AvaII	GGWCC	1 cut(s)	406
BalI	TGGCCA	1 cut(s)	750
Bbv12I	GWGCWC	1 cut(s)	610
BbvI	GCAGC	4 cut(s)	411, 448, 553, 667
BccI	CCATC	3 cut(s)	22, 59, 739
BcoDI	GTCTC	1 cut(s)	34
BfmI	CTRYAG	1 cut(s)	681
BfuAI	ACCTGC	1 cut(s)	454
BisI	GCNGC	5 cut(s)	200, 425, 437, 542, 681
BlsI	GCNGC	5 cut(s)	201, 426, 438, 543, 682
Bme18I	GGWCC	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	406
BmiI	GGNNCC	2 cut(s)	86, 104
BmrI	ACTGGG	1 cut(s)	250
BmuI	ACTGGG	1 cut(s)	250
BsaHI	GRCGYC	1 cut(s)	639
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 704
Bse118I	RCCGGY	1 cut(s)	273
Bse1I	ACTGG	1 cut(s)	256
BseLI	CCNNNNNNNGG	2 cut(s)	262, 704
BseMII	CTCAG	2 cut(s)	89, 687
BseNI	ACTGG	1 cut(s)	256
BsePI	GCGCGC	1 cut(s)	687
BseRI	GAGGAG	1 cut(s)	115
BseXI	GCAGC	4 cut(s)	411, 448, 553, 667
BsgI	GTGCAG	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	689
BshFI	GGCC	2 cut(s)	730, 750
BsiHKAI	GWGCWC	1 cut(s)	610
BsiSI	CCGG	2 cut(s)	274, 366
BslI	CCNNNNNNNGG	2 cut(s)	262, 704
BsmAI	GTCTC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	730, 750
Bsp1286I	GDGCHC	1 cut(s)	610
BspACI	CCGC	3 cut(s)	142, 200, 554
BspANI	GGCC	2 cut(s)	730, 750
BspCNI	CTCAG	2 cut(s)	90, 686
BspFNI	CGCG	1 cut(s)	689
BspLI	GGNNCC	2 cut(s)	86, 104
BspMAI	CTGCAG	1 cut(s)	685
BspMI	ACCTGC	1 cut(s)	454
BspQI	GCTCTTC	1 cut(s)	531
BsrBI	CCGCTC	1 cut(s)	142
BsrFI	RCCGGY	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	256
BssAI	RCCGGY	1 cut(s)	273
BssHII	GCGCGC	1 cut(s)	687
BssNI	GRCGYC	1 cut(s)	639
Bst4CI	ACNGT	2 cut(s)	244, 415
Bst6I	CTCTTC	1 cut(s)	531
BstACI	GRCGYC	1 cut(s)	639
BstC8I	GCNNGC	7 cut(s)	429, 528, 558, 582, 685, 689, 752
BstDEI	CTNAG	3 cut(s)	24, 98, 673
BstFNI	CGCG	1 cut(s)	689
BstHHI	GCGC	2 cut(s)	689, 691
BstMAI	GTCTC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	4 cut(s)	208, 433, 686, 751
BstNSI	RCATGY	2 cut(s)	350, 584
BstSFI	CTRYAG	1 cut(s)	681
BstUI	CGCG	1 cut(s)	689
BstV1I	GCAGC	4 cut(s)	411, 448, 553, 667
BsuRI	GGCC	2 cut(s)	730, 750
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	7 cut(s)	429, 528, 558, 582, 685, 689, 752
CaiI	CAGNNNCTG	1 cut(s)	680
CfoI	GCGC	2 cut(s)	689, 691
Cfr10I	RCCGGY	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	406
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	3 cut(s)	347, 581, 585
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	3 cut(s)	24, 98, 673
EaeI	YGGCCR	2 cut(s)	728, 748
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Eco47I	GGWCC	1 cut(s)	406
Eco57I	CTGAAG	1 cut(s)	323
EcoT22I	ATGCAT	1 cut(s)	586
FaeI	CATG	3 cut(s)	350, 584, 588
FaiI	YATR	4 cut(s)	108, 348, 582, 586
FatI	CATG	3 cut(s)	346, 580, 584
FauI	CCCGC	1 cut(s)	135
Fnu4HI	GCNGC	5 cut(s)	200, 425, 437, 542, 681
Fsp4HI	GCNGC	5 cut(s)	200, 425, 437, 542, 681
GlaI	GCGC	2 cut(s)	688, 690
GluI	GCNGC	5 cut(s)	200, 425, 437, 542, 681
HaeIII	GGCC	2 cut(s)	730, 750
HapII	CCGG	2 cut(s)	274, 366
HhaI	GCGC	2 cut(s)	689, 691
Hin1I	GRCGYC	1 cut(s)	639
Hin1II	CATG	3 cut(s)	350, 584, 588
Hin6I	GCGC	2 cut(s)	687, 689
HinP1I	GCGC	2 cut(s)	687, 689
HincII	GTYRAC	3 cut(s)	115, 418, 637
HindII	GTYRAC	3 cut(s)	115, 418, 637
HindIII	AAGCTT	2 cut(s)	700, 743
HpaII	CCGG	2 cut(s)	274, 366
HphI	GGTGA	5 cut(s)	74, 263, 283, 540, 667
Hpy166II	GTNNAC	3 cut(s)	115, 418, 637
Hpy188I	TCNGA	3 cut(s)	99, 235, 303
Hpy188III	TCNNGA	4 cut(s)	352, 471, 714, 735
Hpy8I	GTNNAC	3 cut(s)	115, 418, 637
Hpy99I	CGWCG	1 cut(s)	235
HpyAV	CCTTC	4 cut(s)	30, 142, 377, 555
HpyCH4III	ACNGT	2 cut(s)	244, 415
HpyCH4IV	ACGT	1 cut(s)	639
HpyCH4V	TGCA	6 cut(s)	13, 247, 284, 526, 584, 683
HpyF10VI	GCNNNNNNNGC	4 cut(s)	208, 433, 686, 751
HpyF3I	CTNAG	3 cut(s)	24, 98, 673
HpySE526I	ACGT	1 cut(s)	639
Hsp92I	GRCGYC	1 cut(s)	639
Hsp92II	CATG	3 cut(s)	350, 584, 588
HspAI	GCGC	2 cut(s)	687, 689
LguI	GCTCTTC	1 cut(s)	531
LmnI	GCTCC	4 cut(s)	84, 102, 139, 605
Lsp1109I	GCAGC	4 cut(s)	411, 448, 553, 667
MaeII	ACGT	1 cut(s)	639
MaeIII	GTNAC	1 cut(s)	289
MbiI	CCGCTC	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	610
MlsI	TGGCCA	1 cut(s)	750
MluCI	AATT	4 cut(s)	314, 322, 339, 504
MluNI	TGGCCA	1 cut(s)	750
MmeI	TCCRAC	2 cut(s)	213, 583
Mox20I	TGGCCA	1 cut(s)	750
Mph1103I	ATGCAT	1 cut(s)	586
MscI	TGGCCA	1 cut(s)	750
MslI	CAYNNNNRTG	1 cut(s)	653
Msp20I	TGGCCA	1 cut(s)	750
MspA1I	CMGCKG	1 cut(s)	424
MspI	CCGG	2 cut(s)	274, 366
MvnI	CGCG	1 cut(s)	689
MwoI	GCNNNNNNNGC	4 cut(s)	208, 433, 686, 751
NlaIII	CATG	3 cut(s)	350, 584, 588
NlaIV	GGNNCC	2 cut(s)	86, 104
NmeAIII	GCCGAG	1 cut(s)	706
NmuCI	GTSAC	1 cut(s)	289
NsiI	ATGCAT	1 cut(s)	586
NspI	RCATGY	2 cut(s)	350, 584
PaeI	GCATGC	1 cut(s)	584
PauI	GCGCGC	1 cut(s)	687
PciSI	GCTCTTC	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	1 cut(s)	733
PflMI	CCANNNNNTGG	2 cut(s)	262, 704
PkrI	GCNGC	5 cut(s)	201, 426, 438, 543, 682
PspN4I	GGNNCC	2 cut(s)	86, 104
PspPI	GGNCC	1 cut(s)	406
PstI	CTGCAG	1 cut(s)	685
PstNI	CAGNNNCTG	1 cut(s)	680
PteI	GCGCGC	1 cut(s)	687
PvuII	CAGCTG	1 cut(s)	424
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
RseI	CAYNNNNRTG	1 cut(s)	653
SapI	GCTCTTC	1 cut(s)	531
SatI	GCNGC	5 cut(s)	200, 425, 437, 542, 681
Sau96I	GGNCC	1 cut(s)	406
SduI	GDGCHC	1 cut(s)	610
SfcI	CTRYAG	1 cut(s)	681
SgrAI	CRCCGGYG	1 cut(s)	273
SinI	GGWCC	1 cut(s)	406
SmiMI	CAYNNNNRTG	1 cut(s)	653
SphI	GCATGC	1 cut(s)	584
Sse9I	AATT	4 cut(s)	314, 322, 339, 504
SsiI	CCGC	3 cut(s)	142, 200, 554
TaaI	ACNGT	2 cut(s)	244, 415
TaiI	ACGT	1 cut(s)	642
TaqI	TCGA	3 cut(s)	351, 470, 534
TasI	AATT	4 cut(s)	314, 322, 339, 504
TauI	GCSGC	1 cut(s)	202
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	4 cut(s)	424, 436, 541, 680
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	17, 348
TspGWI	ACGGA	1 cut(s)	97
Van91I	CCANNNNNTGG	2 cut(s)	262, 704
VpaK11BI	GGWCC	1 cut(s)	406
XceI	RCATGY	2 cut(s)	350, 584
ZraI	GACGTC	1 cut(s)	640
Zsp2I	ATGCAT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.