Rh3CG332100

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0016997
Physical Location & Seq
Forward (+)
36927577 .. 36928663
1087 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG332100.1

Sequence Viewer

Length: 852 bp
ATGGAGGTCCAAACAGTTGACCGGCCACCAGCACAGCACCCTGTTGAACAATGTAGCATTATGCAGGTGTCGAGAGTGGAAGAAACAGGAGGACATCAAGAAATAATTAGAGAAGAAGAGGAGGTGCAAGCTATTGAAGAGCAGCCTTCACCACCGGCTGCTGAACGATGTAGCATTGGACATGCATGGAGTGAGGAAGAAGTTGGAGCACTCAACACAGGATCGGGTAGTGAGGATGACTTCCAGATCATTGAGGTGAAGCAATCACAATCCCCAGTGGCTGCAGGAGCTCTATCCAAGCTTTGGGGTTTCTGGAAAGTTATCTCGGCCATCACGAAGAAAGCTTGGCCAGCACCAATGAAGCTTCAATCCCCAATCTGGATGAGAACATGTCTTGGGCAGGCTTTGTTGGAGTCCAAATATCCCACAGCTAGCAAAATCACTGATGAAGTGAATGAAGCATCTAAAAGGAAGTCAGAGCTGAAACAAGAAGTAATGCTCTATACTATCCGCTCATTTGAAGCTCAAAAGGAAGAATCCGAGTTGCTGAATCAAATCAATGGAAAAAAGTTGATGATTGAAGATCTCAAGGAAAAATTGGCTGCAGAGGAAGCACGCCTGAAGGAATTGGAGCAGTCCCATGCTAAACAGATAACCAAAATGAGTGAGTCCAATTCCGGGCGTGAAAAGGTTCAGCATATGCTTTATAATCACTGTATCCATAAGAACACTTGGGTGAAGAAAGCTTTGCAAGCTAAAAAGGATTTTCTGTCTGTTGAAGCAACTTGGGTTCAGATGCAAAAACTTCTTCCCCTAATTTGCTGCTGGAAAGAGGAGGCAGCAACCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

283

Amino Acids

32.05

Weight (kDa)

5.66

Isoelectric Point (pI)

60.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 708
AarI CACCTGC 1 cut(s) 55
Acc36I ACCTGC 1 cut(s) 55
AccB7I CCANNNNNTGG 1 cut(s) 303
AccBSI CCGCTC 1 cut(s) 513
AciI CCGC 1 cut(s) 511
AclWI GGATC 1 cut(s) 229
AcoI YGGCCR 3 cut(s) 23, 327, 347
AcuI CTGAAG 1 cut(s) 641
AfiI CCNNNNNNNGG 3 cut(s) 303, 378, 678
AflIII ACRYGT 1 cut(s) 389
AgsI TTSAA 6 cut(s) 47, 137, 368, 521, 581, 779
AleI CACNNNNGTG 1 cut(s) 734
Alw21I GWGCWC 2 cut(s) 211, 292
AlwI GGATC 1 cut(s) 229
AlwNI CAGNNNCTG 1 cut(s) 281
AoxI GGCC 3 cut(s) 23, 327, 347
ApeKI GCWGC 6 cut(s) 142, 158, 281, 602, 822, 839
Asp700I GAANNNNTTC 1 cut(s) 690
AspS9I GGNCC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 679
AsuHPI GGTGA 3 cut(s) 141, 268, 748
AsuNHI GCTAGC 1 cut(s) 431
AvaII GGWCC 1 cut(s) 7
BalI TGGCCA 1 cut(s) 349
BanII GRGCYC 1 cut(s) 292
Bbv12I GWGCWC 2 cut(s) 211, 292
BbvI GCAGC 5 cut(s) 145, 154, 268, 589, 809
BccI CCATC 1 cut(s) 338
BciVI GTATCC 1 cut(s) 728
BcnI CCSGG 1 cut(s) 679
BfaI CTAG 1 cut(s) 432
BfmI CTRYAG 2 cut(s) 282, 603
BfuAI ACCTGC 1 cut(s) 55
BfuI GTATCC 1 cut(s) 728
BglII AGATCT 1 cut(s) 583
BisI GCNGC 6 cut(s) 143, 159, 282, 603, 823, 840
BlsI GCNGC 6 cut(s) 144, 160, 283, 604, 824, 841
Bme1390I CCNGG 1 cut(s) 679
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 679
BmrI ACTGGG 1 cut(s) 269
BmsI GCATC 2 cut(s) 470, 786
BmtI GCTAGC 1 cut(s) 435
BmuI ACTGGG 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 572
BpuMI CCSGG 1 cut(s) 679
Bsc4I CCNNNNNNNGG 3 cut(s) 303, 378, 678
Bse118I RCCGGY 2 cut(s) 21, 154
Bse1I ACTGG 1 cut(s) 275
BseGI GGATG 2 cut(s) 241, 387
BseLI CCNNNNNNNGG 3 cut(s) 303, 378, 678
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 2 cut(s) 134, 848
BseXI GCAGC 5 cut(s) 145, 154, 268, 589, 809
BshFI GGCC 3 cut(s) 25, 329, 349
BsiHKAI GWGCWC 2 cut(s) 211, 292
BsiSI CCGG 3 cut(s) 22, 155, 678
BslFI GGGAC 1 cut(s) 622
BslI CCNNNNNNNGG 3 cut(s) 303, 378, 678
BsmFI GGGAC 1 cut(s) 622
BsnI GGCC 3 cut(s) 25, 329, 349
Bsp1286I GDGCHC 2 cut(s) 211, 292
Bsp143I GATC 3 cut(s) 221, 246, 583
BspACI CCGC 1 cut(s) 511
BspANI GGCC 3 cut(s) 25, 329, 349
BspMAI CTGCAG 2 cut(s) 286, 607
BspMI ACCTGC 1 cut(s) 55
BspOI GCTAGC 1 cut(s) 435
BspPI GGATC 1 cut(s) 229
BspQI GCTCTTC 1 cut(s) 132
BsrBI CCGCTC 1 cut(s) 513
BsrFI RCCGGY 2 cut(s) 21, 154
BsrI ACTGG 1 cut(s) 275
BssAI RCCGGY 2 cut(s) 21, 154
BssMI GATC 3 cut(s) 221, 246, 583
Bst4CI ACNGT 2 cut(s) 16, 716
Bst6I CTCTTC 2 cut(s) 111, 132
BstC8I GCNNGC 6 cut(s) 129, 351, 402, 433, 616, 753
BstF5I GGATG 2 cut(s) 241, 387
BstKTI GATC 3 cut(s) 224, 249, 586
BstMBI GATC 3 cut(s) 221, 246, 583
BstMWI GCNNNNNNNGC 4 cut(s) 287, 350, 611, 752
BstNSI RCATGY 2 cut(s) 185, 393
BstSCI CCNGG 1 cut(s) 677
BstSFI CTRYAG 2 cut(s) 282, 603
BstV1I GCAGC 5 cut(s) 145, 154, 268, 589, 809
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
BsuI GTATCC 1 cut(s) 728
BsuRI GGCC 3 cut(s) 25, 329, 349
BtsCI GGATG 2 cut(s) 241, 387
BtsIMutI CAGTG 3 cut(s) 282, 441, 712
BveI ACCTGC 1 cut(s) 55
Cac8I GCNNGC 6 cut(s) 129, 351, 402, 433, 616, 753
CaiI CAGNNNCTG 1 cut(s) 281
Cfr10I RCCGGY 2 cut(s) 21, 154
Cfr13I GGNCC 1 cut(s) 7
CviAII CATG 4 cut(s) 182, 186, 390, 641
DpnI GATC 3 cut(s) 223, 248, 585
DpnII GATC 3 cut(s) 221, 246, 583
EaeI YGGCCR 3 cut(s) 23, 327, 347
Eam1104I CTCTTC 2 cut(s) 111, 132
EarI CTCTTC 2 cut(s) 111, 132
Ecl136II GAGCTC 1 cut(s) 290
Eco24I GRGCYC 1 cut(s) 292
Eco47I GGWCC 1 cut(s) 7
Eco53kI GAGCTC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 641
EcoICRI GAGCTC 1 cut(s) 290
EcoT22I ATGCAT 1 cut(s) 187
EcoT38I GRGCYC 1 cut(s) 292
FaeI CATG 4 cut(s) 185, 189, 393, 644
FaqI GGGAC 1 cut(s) 622
FatI CATG 4 cut(s) 181, 185, 389, 640
FauNDI CATATG 1 cut(s) 699
Fnu4HI GCNGC 6 cut(s) 143, 159, 282, 603, 823, 840
FokI GGATG 2 cut(s) 248, 394
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 6 cut(s) 143, 159, 282, 603, 823, 840
FspBI CTAG 1 cut(s) 432
GluI GCNGC 6 cut(s) 143, 159, 282, 603, 823, 840
HaeIII GGCC 3 cut(s) 25, 329, 349
HapII CCGG 3 cut(s) 22, 155, 678
Hin1II CATG 4 cut(s) 185, 189, 393, 644
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 4 cut(s) 299, 342, 362, 744
HinfI GANTC 4 cut(s) 413, 536, 550, 668
HpaII CCGG 3 cut(s) 22, 155, 678
HphI GGTGA 3 cut(s) 141, 268, 748
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 3 cut(s) 478, 541, 795
Hpy188III TCNNGA 6 cut(s) 72, 98, 244, 313, 334, 379
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 2 cut(s) 156, 616
HpyCH4III ACNGT 2 cut(s) 16, 716
HpyCH4V TGCA 7 cut(s) 64, 127, 185, 284, 605, 751, 799
HpyF10VI GCNNNNNNNGC 4 cut(s) 287, 350, 611, 752
Hsp92II CATG 4 cut(s) 185, 189, 393, 644
Kzo9I GATC 3 cut(s) 221, 246, 583
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 3 cut(s) 206, 287, 631
Lsp1109I GCAGC 5 cut(s) 145, 154, 268, 589, 809
LweI GCATC 2 cut(s) 470, 786
MaeI CTAG 1 cut(s) 432
MalI GATC 3 cut(s) 223, 248, 585
MbiI CCGCTC 1 cut(s) 513
MboI GATC 3 cut(s) 221, 246, 583
MflI RGATCY 1 cut(s) 583
MhlI GDGCHC 2 cut(s) 211, 292
MlsI TGGCCA 1 cut(s) 349
MluCI AATT 5 cut(s) 105, 596, 626, 673, 816
MluNI TGGCCA 1 cut(s) 349
MlyI GAGTC 2 cut(s) 422, 677
MmeI TCCRAC 2 cut(s) 184, 390
MnlI CCTC 9 cut(s) 83, 112, 115, 187, 226, 247, 601, 826, 829
Mox20I TGGCCA 1 cut(s) 349
Mph1103I ATGCAT 1 cut(s) 187
MroXI GAANNNNTTC 1 cut(s) 690
MscI TGGCCA 1 cut(s) 349
MslI CAYNNNNRTG 2 cut(s) 254, 734
Msp20I TGGCCA 1 cut(s) 349
MspI CCGG 3 cut(s) 22, 155, 678
MspR9I CCNGG 1 cut(s) 679
MwoI GCNNNNNNNGC 4 cut(s) 287, 350, 611, 752
NciI CCSGG 1 cut(s) 679
NdeI CATATG 1 cut(s) 699
NdeII GATC 3 cut(s) 221, 246, 583
NheI GCTAGC 1 cut(s) 431
NlaIII CATG 4 cut(s) 185, 189, 393, 644
NmeAIII GCCGAG 1 cut(s) 305
NsiI ATGCAT 1 cut(s) 187
NspI RCATGY 2 cut(s) 185, 393
OliI CACNNNNGTG 1 cut(s) 734
PaqCI CACCTGC 1 cut(s) 55
PciI ACATGT 1 cut(s) 389
PciSI GCTCTTC 1 cut(s) 132
PcsI WCGNNNNNNNCGW 1 cut(s) 332
PdmI GAANNNNTTC 1 cut(s) 690
PfeI GAWTC 2 cut(s) 536, 550
PflMI CCANNNNNTGG 1 cut(s) 303
PkrI GCNGC 6 cut(s) 144, 160, 283, 604, 824, 841
PleI GAGTC 2 cut(s) 421, 676
PpsI GAGTC 2 cut(s) 421, 676
PscI ACATGT 1 cut(s) 389
PsiI TTATAA 1 cut(s) 708
Psp124BI GAGCTC 1 cut(s) 292
PspPI GGNCC 1 cut(s) 7
PstI CTGCAG 2 cut(s) 286, 607
PstNI CAGNNNCTG 1 cut(s) 281
PsuI RGATCY 1 cut(s) 583
RseI CAYNNNNRTG 2 cut(s) 254, 734
SacI GAGCTC 1 cut(s) 292
SapI GCTCTTC 1 cut(s) 132
SatI GCNGC 6 cut(s) 143, 159, 282, 603, 823, 840
Sau3AI GATC 3 cut(s) 221, 246, 583
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 2 cut(s) 422, 677
ScrFI CCNGG 1 cut(s) 679
SduI GDGCHC 2 cut(s) 211, 292
SfaNI GCATC 2 cut(s) 470, 786
SfcI CTRYAG 2 cut(s) 282, 603
SinI GGWCC 1 cut(s) 7
SmiMI CAYNNNNRTG 2 cut(s) 254, 734
SmlI CTYRAG 1 cut(s) 587
SmoI CTYRAG 1 cut(s) 587
Sse9I AATT 5 cut(s) 105, 596, 626, 673, 816
SsiI CCGC 1 cut(s) 511
SspMI CTAG 1 cut(s) 432
SstI GAGCTC 1 cut(s) 292
StyD4I CCNGG 1 cut(s) 677
TaaI ACNGT 2 cut(s) 16, 716
TaqI TCGA 1 cut(s) 71
TasI AATT 5 cut(s) 105, 596, 626, 673, 816
TfiI GAWTC 2 cut(s) 536, 550
TscAI CASTG 3 cut(s) 282, 448, 719
TseI GCWGC 6 cut(s) 142, 158, 281, 602, 822, 839
TspDTI ATGAA 3 cut(s) 374, 462, 471
TspRI CASTG 3 cut(s) 282, 448, 719
Van91I CCANNNNNTGG 1 cut(s) 303
VpaK11BI GGWCC 1 cut(s) 7
XceI RCATGY 2 cut(s) 185, 393
XmnI GAANNNNTTC 1 cut(s) 690
XspI CTAG 1 cut(s) 432
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.