Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015320.1

Orthogroup ID

OG0016997

Physical Location & Seq

Genomic Coordinates Forward (+)

1547 .. 4357

Gene Structure 2811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015320.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

atggggagaaggagacaggagggttgtgaaaatggtgatggaggcgagaagaaacggagtcgaacgggtctgaggagccagacgaaagttgacaactttagtgagttagagtgggagcgggggaagggtaaaaggggtgggagggttagggccactttatcaagtggtaagacgcctcagggagagccagagatgaaggacaatgttgggtcctcggaagctacggcgcagaccacccagctcttgcctctgaagaactttgaattgagaagttgtgaaaatgaaagaattaagcatgtcaagagagaggaaactggagaaagacagaaaggagggaggggagaagaaatggaggtccaaacagttgaccggccaccagcacagcaccctgttgaacaatgtagcattatgcaggtgtcgagagtggaagaaacaggaggacatcaagaaataattagagaagaagaggaggtgcaagctatcgaagaggaggtgcaagctattgaagagcagccttcaccaccggctgctgaacgatgtagcattggacatgcatggagtgaggaagaagttggagcactcaacacaggatcgggtagtgaggatgacttccagatcattgaggtgaagcaatcacaatccccagtggctgcaggcgtgagtttttgctctatccaagctttggggtttctggaaagttatctcggccatcacgaagaaagcttggccagcaccaatgaagcttcaatccccaatctggatgaggttgctcgagctaaggccaacatccaaaagatttccactctctctattgatgaagtcatggaatctgagtgtgttggacgcttcaaatcatcgttggaatttttgctcaaagctgatggcagagctggagctcagtcggcaaatatagaacatgtcttgggcaggctttgttggagtccaaatatcccacagctagcaaaatcactgatgaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMD

Protein Analysis

326

Amino Acids

35.88

Weight (kDa)

5.13

Isoelectric Point (pI)

65.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016997)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0491561
rosa_laevigata	RLG00000022836
rosa_multiflora	Rmu_sc0015320.1_g000002
rosa_roxburghii	Rroxscaffold_6G00392900
rosa_rugosa	Rorug03G0250300
rosa_samantha	Rh3BG335100 Rh3BG335200 Rh3BG335700 Rh3CG331900 Rh3CG332000 Rh3CG332100 Rh3DG333600 Rh3DG333700 Rh3DG333800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	403
Acc36I	ACCTGC	1 cut(s)	403
AccB7I	CCANNNNNTGG	1 cut(s)	682
AccBSI	CCGCTC	1 cut(s)	118
AciI	CCGC	1 cut(s)	118
AclWI	GGATC	1 cut(s)	598
AcoI	YGGCCR	3 cut(s)	371, 706, 726
AcsI	RAATTY	1 cut(s)	863
AcuI	CTGAAG	1 cut(s)	272
AcyI	GRCGYC	1 cut(s)	173
AfiI	CCNNNNNNNGG	2 cut(s)	682, 757
AflIII	ACRYGT	1 cut(s)	916
AgsI	TTSAA	5 cut(s)	263, 395, 506, 747, 850
Alw21I	GWGCWC	2 cut(s)	580, 898
Alw26I	GTCTC	1 cut(s)	7
AlwI	GGATC	1 cut(s)	598
AlwNI	CAGNNNCTG	1 cut(s)	650
Ama87I	CYCGRG	1 cut(s)	771
AoxI	GGCC	5 cut(s)	150, 371, 706, 726, 780
ApeKI	GCWGC	3 cut(s)	511, 527, 650
ApoI	RAATTY	1 cut(s)	863
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	3 cut(s)	150, 210, 355
AsuHPI	GGTGA	3 cut(s)	47, 510, 637
AsuNHI	GCTAGC	1 cut(s)	958
AvaI	CYCGRG	1 cut(s)	771
AvaII	GGWCC	2 cut(s)	210, 355
AxyI	CCTNAGG	1 cut(s)	177
BalI	TGGCCA	1 cut(s)	728
BanII	GRGCYC	1 cut(s)	898
Bbv12I	GWGCWC	2 cut(s)	580, 898
BbvI	GCAGC	3 cut(s)	514, 523, 637
BccI	CCATC	3 cut(s)	32, 717, 875
BceAI	ACGGC	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	7
BfaI	CTAG	1 cut(s)	959
BfmI	CTRYAG	1 cut(s)	651
BfuAI	ACCTGC	1 cut(s)	403
BisI	GCNGC	3 cut(s)	512, 528, 651
BlsI	GCNGC	3 cut(s)	513, 529, 652
Bme18I	GGWCC	2 cut(s)	210, 355
BmeT110I	CYCGRG	1 cut(s)	771
BmgT120I	GGNCC	3 cut(s)	150, 210, 355
BmiI	GGNNCC	2 cut(s)	77, 211
BmrI	ACTGGG	1 cut(s)	638
BmtI	GCTAGC	1 cut(s)	962
BmuI	ACTGGG	1 cut(s)	638
BpmI	CTGGAG	2 cut(s)	336, 912
Bpu10I	CCTNAGC	1 cut(s)	777
BsaHI	GRCGYC	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	2 cut(s)	682, 757
Bse118I	RCCGGY	2 cut(s)	369, 523
Bse1I	ACTGG	2 cut(s)	319, 644
Bse21I	CCTNAGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	3 cut(s)	610, 766, 786
BseLI	CCNNNNNNNGG	2 cut(s)	682, 757
BseMII	CTCAG	4 cut(s)	62, 191, 822, 911
BseNI	ACTGG	2 cut(s)	319, 644
BseRI	GAGGAG	3 cut(s)	88, 482, 503
BseXI	GCAGC	3 cut(s)	514, 523, 637
BseYI	CCCAGC	1 cut(s)	237
BshFI	GGCC	5 cut(s)	152, 373, 708, 728, 782
BsiHKAI	GWGCWC	2 cut(s)	580, 898
BsiHKCI	CYCGRG	1 cut(s)	771
BsiSI	CCGG	2 cut(s)	370, 524
BslI	CCNNNNNNNGG	2 cut(s)	682, 757
BsmAI	GTCTC	1 cut(s)	7
BsnI	GGCC	5 cut(s)	152, 373, 708, 728, 782
BsoBI	CYCGRG	1 cut(s)	771
Bsp1286I	GDGCHC	2 cut(s)	580, 898
Bsp143I	GATC	2 cut(s)	590, 615
BspACI	CCGC	1 cut(s)	118
BspANI	GGCC	5 cut(s)	152, 373, 708, 728, 782
BspCNI	CTCAG	4 cut(s)	63, 190, 823, 910
BspLI	GGNNCC	2 cut(s)	77, 211
BspMAI	CTGCAG	1 cut(s)	655
BspMI	ACCTGC	1 cut(s)	403
BspOI	GCTAGC	1 cut(s)	962
BspPI	GGATC	1 cut(s)	598
BspQI	GCTCTTC	1 cut(s)	501
BsrBI	CCGCTC	1 cut(s)	118
BsrFI	RCCGGY	2 cut(s)	369, 523
BsrI	ACTGG	2 cut(s)	319, 644
BssAI	RCCGGY	2 cut(s)	369, 523
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	2 cut(s)	590, 615
BssNI	GRCGYC	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	3 cut(s)	459, 480, 501
BstACI	GRCGYC	1 cut(s)	173
BstC8I	GCNNGC	6 cut(s)	477, 498, 655, 730, 929, 960
BstDEI	CTNAG	5 cut(s)	71, 177, 777, 831, 897
BstF5I	GGATG	3 cut(s)	610, 766, 786
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	2 cut(s)	593, 618
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	2 cut(s)	590, 615
BstMWI	GCNNNNNNNGC	2 cut(s)	729, 902
BstNSI	RCATGY	3 cut(s)	299, 554, 920
BstSFI	CTRYAG	1 cut(s)	651
BstV1I	GCAGC	3 cut(s)	514, 523, 637
Bsu36I	CCTNAGG	1 cut(s)	177
BsuRI	GGCC	5 cut(s)	152, 373, 708, 728, 782
BtsCI	GGATG	3 cut(s)	610, 766, 786
BtsIMutI	CAGTG	2 cut(s)	651, 968
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	6 cut(s)	477, 498, 655, 730, 929, 960
CaiI	CAGNNNCTG	1 cut(s)	650
CfoI	GCGC	1 cut(s)	229
Cfr10I	RCCGGY	2 cut(s)	369, 523
Cfr13I	GGNCC	3 cut(s)	150, 210, 355
CseI	GACGC	2 cut(s)	181, 852
CviAII	CATG	5 cut(s)	296, 551, 555, 823, 917
DdeI	CTNAG	5 cut(s)	71, 177, 777, 831, 897
DpnI	GATC	2 cut(s)	592, 617
DpnII	GATC	2 cut(s)	590, 615
EaeI	YGGCCR	3 cut(s)	371, 706, 726
Eam1104I	CTCTTC	3 cut(s)	459, 480, 501
EarI	CTCTTC	3 cut(s)	459, 480, 501
Ecl136II	GAGCTC	1 cut(s)	896
Eco24I	GRGCYC	1 cut(s)	898
Eco47I	GGWCC	2 cut(s)	210, 355
Eco53kI	GAGCTC	1 cut(s)	896
Eco57I	CTGAAG	1 cut(s)	272
Eco81I	CCTNAGG	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	771
EcoICRI	GAGCTC	1 cut(s)	896
EcoO109I	RGGNCCY	1 cut(s)	210
EcoT22I	ATGCAT	1 cut(s)	556
EcoT38I	GRGCYC	1 cut(s)	898
FaeI	CATG	5 cut(s)	299, 554, 558, 826, 920
FaiI	YATR	7 cut(s)	297, 410, 552, 556, 824, 911, 918
FatI	CATG	5 cut(s)	295, 550, 554, 822, 916
FauI	CCCGC	1 cut(s)	111
Fnu4HI	GCNGC	3 cut(s)	512, 528, 651
FokI	GGATG	3 cut(s)	617, 773, 773
FriOI	GRGCYC	1 cut(s)	898
Fsp4HI	GCNGC	3 cut(s)	512, 528, 651
FspBI	CTAG	1 cut(s)	959
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	3 cut(s)	512, 528, 651
GsaI	CCCAGC	1 cut(s)	241
GsuI	CTGGAG	2 cut(s)	336, 912
HaeIII	GGCC	5 cut(s)	152, 373, 708, 728, 782
HapII	CCGG	2 cut(s)	370, 524
HgaI	GACGC	2 cut(s)	181, 852
HhaI	GCGC	1 cut(s)	229
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	5 cut(s)	299, 554, 558, 826, 920
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HincII	GTYRAC	2 cut(s)	91, 367
HindII	GTYRAC	2 cut(s)	91, 367
HindIII	AAGCTT	3 cut(s)	678, 721, 741
HinfI	GANTC	3 cut(s)	58, 827, 940
HpaII	CCGG	2 cut(s)	370, 524
HphI	GGTGA	3 cut(s)	47, 510, 637
Hpy166II	GTNNAC	2 cut(s)	91, 367
Hpy188I	TCNGA	4 cut(s)	72, 217, 252, 832
Hpy188III	TCNNGA	7 cut(s)	301, 420, 446, 613, 692, 713, 758
Hpy8I	GTNNAC	2 cut(s)	91, 367
HpyAV	CCTTC	4 cut(s)	3, 118, 190, 525
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4V	TGCA	5 cut(s)	412, 475, 496, 554, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	729, 902
HpyF3I	CTNAG	5 cut(s)	71, 177, 777, 831, 897
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	5 cut(s)	299, 554, 558, 826, 920
HspAI	GCGC	1 cut(s)	227
Kzo9I	GATC	2 cut(s)	590, 615
LguI	GCTCTTC	1 cut(s)	501
LmnI	GCTCC	4 cut(s)	75, 115, 575, 893
Lsp1109I	GCAGC	3 cut(s)	514, 523, 637
MaeI	CTAG	1 cut(s)	959
MalI	GATC	2 cut(s)	592, 617
MbiI	CCGCTC	1 cut(s)	118
MboI	GATC	2 cut(s)	590, 615
MhlI	GDGCHC	2 cut(s)	580, 898
MlsI	TGGCCA	1 cut(s)	728
MluCI	AATT	4 cut(s)	263, 288, 453, 863
MluNI	TGGCCA	1 cut(s)	728
MlyI	GAGTC	2 cut(s)	67, 949
MmeI	TCCRAC	4 cut(s)	553, 820, 840, 917
Mox20I	TGGCCA	1 cut(s)	728
Mph1103I	ATGCAT	1 cut(s)	556
MscI	TGGCCA	1 cut(s)	728
MseI	TTAA	1 cut(s)	291
MslI	CAYNNNNRTG	1 cut(s)	623
Msp20I	TGGCCA	1 cut(s)	728
MspI	CCGG	2 cut(s)	370, 524
MwoI	GCNNNNNNNGC	2 cut(s)	729, 902
NdeII	GATC	2 cut(s)	590, 615
NheI	GCTAGC	1 cut(s)	958
NlaIII	CATG	5 cut(s)	299, 554, 558, 826, 920
NlaIV	GGNNCC	2 cut(s)	77, 211
NmeAIII	GCCGAG	1 cut(s)	684
NsiI	ATGCAT	1 cut(s)	556
NspI	RCATGY	3 cut(s)	299, 554, 920
PaeR7I	CTCGAG	1 cut(s)	771
PaqCI	CACCTGC	1 cut(s)	403
PciI	ACATGT	1 cut(s)	916
PciSI	GCTCTTC	1 cut(s)	501
PcsI	WCGNNNNNNNCGW	1 cut(s)	711
PfeI	GAWTC	1 cut(s)	827
PflMI	CCANNNNNTGG	1 cut(s)	682
PkrI	GCNGC	3 cut(s)	513, 529, 652
PleI	GAGTC	2 cut(s)	66, 948
PpsI	GAGTC	2 cut(s)	66, 948
PpuMI	RGGWCCY	1 cut(s)	210
PscI	ACATGT	1 cut(s)	916
Psp124BI	GAGCTC	1 cut(s)	898
Psp5II	RGGWCCY	1 cut(s)	210
PspFI	CCCAGC	1 cut(s)	237
PspN4I	GGNNCC	2 cut(s)	77, 211
PspPI	GGNCC	3 cut(s)	150, 210, 355
PspPPI	RGGWCCY	1 cut(s)	210
PspXI	VCTCGAGB	1 cut(s)	771
PstI	CTGCAG	1 cut(s)	655
PstNI	CAGNNNCTG	1 cut(s)	650
RseI	CAYNNNNRTG	1 cut(s)	623
SacI	GAGCTC	1 cut(s)	898
SapI	GCTCTTC	1 cut(s)	501
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	3 cut(s)	512, 528, 651
Sau3AI	GATC	2 cut(s)	590, 615
Sau96I	GGNCC	3 cut(s)	150, 210, 355
SchI	GAGTC	2 cut(s)	67, 949
SduI	GDGCHC	2 cut(s)	580, 898
SfcI	CTRYAG	1 cut(s)	651
Sfr274I	CTCGAG	1 cut(s)	771
SinI	GGWCC	2 cut(s)	210, 355
SlaI	CTCGAG	1 cut(s)	771
SmiMI	CAYNNNNRTG	1 cut(s)	623
SmlI	CTYRAG	1 cut(s)	771
SmoI	CTYRAG	1 cut(s)	771
Sse9I	AATT	4 cut(s)	263, 288, 453, 863
SsiI	CCGC	1 cut(s)	118
SspMI	CTAG	1 cut(s)	959
SstI	GAGCTC	1 cut(s)	898
TaaI	ACNGT	1 cut(s)	364
TaqI	TCGA	4 cut(s)	61, 419, 483, 772
TasI	AATT	4 cut(s)	263, 288, 453, 863
TfiI	GAWTC	1 cut(s)	827
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	2 cut(s)	651, 975
TseI	GCWGC	3 cut(s)	511, 527, 650
TspDTI	ATGAA	4 cut(s)	209, 297, 753, 831
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	2 cut(s)	651, 975
Van91I	CCANNNNNTGG	1 cut(s)	682
VpaK11BI	GGWCC	2 cut(s)	210, 355
XapI	RAATTY	1 cut(s)	863
XceI	RCATGY	3 cut(s)	299, 554, 920
XhoI	CTCGAG	1 cut(s)	771
XspI	CTAG	1 cut(s)	959
Zsp2I	ATGCAT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.