Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0016997

Physical Location & Seq

Genomic Coordinates Reverse (-)

13077053 .. 13082013

Gene Structure 4961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022836

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGAAGAATGTGCAAGGAGCTGCTAAGATGGGGGGAAGGAGACAAGAGGGTTGTGAAAATGGTGATGGAGGCGAGAAGAAACGGAGCCGAATGGGTCTGAGGAGCCAGAAAGTTGACAACTTTAGTGAGTTAGAGTGGGAGCGGGGGAAGGGTAAAAGGGGTGGGAGGGTTAGGGTCAGTTTATCAAGTGGTAAGAAGCCTCAGGGAGAGCCAGAGATGAAGGACATGGTTGGGTCGTCGGAAGCTACGGCGCAGACAACCCAGTTCTTGGTTTTTCACCGGCGTGCATTTGTCACCGAGCTGAACAACTCTGAATTGAGAAGCAAACATGTCTGGAGAGATGAAGCTGTCGACCAGCAGCCAGCACAGCACCCTGTTGAACATTGTAGCCCATCTGCTGCAAATTCTTTGAATAAAAATACATTTTCAGCTCTTGTTTTGCCTCTGAAGAACTTTGAATTAAGAAATTGTGAAAATGAAAGAATTAGGCAGCACAGCACAGCAGAAGGGAGGGAAGAAGAAATGGAGGTCCAACCAGTTGACCAGCTGCCAGCACAGCAGCCTGTTGAAAAATGTAGCATTAGGCAGGTATCGAGAGTGGAAGAAACAGGAGGACAGCAAGAAATAATTAGAGAAGAAGAGGAGGTACAAGCTATCGAAGAGCAGCCTTCACCACCGCCTGCTGAACAATGTAGCATTGGGCATGCATGGAGTGAGGAAGAAGTTGGAGCACTCAACAAAGGATCGGGTAGTGAGGTTGACGTCCAAATCATTGAGGTGAAGCAATCACAATCCTCAGTTGCTGCAGGCTCTAGGCGCTCTATCCAAGCTTTGGGGTTTCTTGAAAGTTATCTCGGCGAGCACCAACAAAGCTTGGCCAGCACCAATGAAGCTTCAATCCCCAATTTGTATGAGGTTGCTCAAGCTAAGGCCAAAATTCAAAGGATTTCCACTCTCTCTATTGATGAAGTCATGGAATCTGAGTGTGTTCAAAGCTTCAAATCATCGTTGGAATTTTTGCTCAAATCTGATGACACAGCTGGAGCTCAGTCGGCAAATATTGAACATGTCTTGGGCAAGCTGGCTTTGTTGGAGTTTAAATATTCCACGGCTAGCAAAATCACCGATGAAGTGAATGAAGCATCTAAAAGGAAGTTAGAGCTGGAACAAGAAGCGAAATACTATACTATCCGCTCATCTGAAGCTCAAAAGGAAGAATATGAATTGCTGAATCAAATCAATGGAAAAAAGTTGATGATAGAAGATCTCAAGGAAAAATTGGCTGCAGAGGAAGCGTGCTTGAAGGAATTGGAGCAGTCCCACGCCACACAGACAACCAAACTGAGTGAATTCAATTCTGGGCCTGAAAAGGTTCAGCATCTGCTTTCTAATCATTGTATCCATGAGAACACTTCGTTGAAGAAAGCTTTGCAAGCTAAAAAGAATTTTCTGTCTGTTGAAGCAGCTTGGGTTCAGATGCAGCAACTTCTCACATTAATTTGCAGCTGGAAAGAGGAGGCAGCAACCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMD

Protein Analysis

511

Amino Acids

56.92

Weight (kDa)

5.44

Isoelectric Point (pI)

55.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016997)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0491561
rosa_laevigata	RLG00000022836
rosa_multiflora	Rmu_sc0015320.1_g000002
rosa_roxburghii	Rroxscaffold_6G00392900
rosa_rugosa	Rorug03G0250300
rosa_samantha	Rh3BG335100 Rh3BG335200 Rh3BG335700 Rh3CG331900 Rh3CG332000 Rh3CG332100 Rh3DG333600 Rh3DG333700 Rh3DG333800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	765
Acc36I	ACCTGC	1 cut(s)	577
AccB7I	CCANNNNNTGG	2 cut(s)	268, 832
AccBSI	CCGCTC	2 cut(s)	142, 1194
AccI	GTMKAC	1 cut(s)	351
AciI	CCGC	3 cut(s)	142, 677, 1192
AclWI	GGATC	1 cut(s)	751
AcoI	YGGCCR	1 cut(s)	876
AcsI	RAATTY	5 cut(s)	403, 936, 1013, 1349, 1444
AcuI	CTGAAG	2 cut(s)	467, 1221
AcyI	GRCGYC	1 cut(s)	762
AfaI	GTAC	1 cut(s)	648
AfiI	CCNNNNNNNGG	2 cut(s)	268, 832
AflIII	ACRYGT	2 cut(s)	328, 1066
AleI	CACNNNNGTG	1 cut(s)	282
Alw21I	GWGCWC	3 cut(s)	733, 864, 1048
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	1 cut(s)	751
AlwNI	CAGNNNCTG	2 cut(s)	803, 1381
AoxI	GGCC	3 cut(s)	876, 930, 1361
ApoI	RAATTY	5 cut(s)	403, 936, 1013, 1349, 1444
AseI	ATTAAT	1 cut(s)	1496
Asp700I	GAANNNNTTC	1 cut(s)	1371
AspLEI	GCGC	2 cut(s)	253, 819
AspS9I	GGNCC	2 cut(s)	529, 1361
AsuHPI	GGTGA	6 cut(s)	74, 269, 286, 663, 790, 1114
AsuNHI	GCTAGC	1 cut(s)	1112
AvaII	GGWCC	1 cut(s)	529
AxyI	CCTNAGG	1 cut(s)	201
BalI	TGGCCA	1 cut(s)	878
BanII	GRGCYC	1 cut(s)	1048
BarI	GAAGNNNNNNTAC	2 cut(s)	630, 662
Bbv12I	GWGCWC	3 cut(s)	733, 864, 1048
BccI	CCATC	3 cut(s)	22, 59, 400
BceAI	ACGGC	2 cut(s)	264, 1125
BciVI	GTATCC	1 cut(s)	1409
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	2 cut(s)	813, 1113
BfmI	CTRYAG	2 cut(s)	804, 1284
BfoI	RGCGCY	1 cut(s)	820
BfuAI	ACCTGC	1 cut(s)	577
BfuI	GTATCC	1 cut(s)	1409
BglII	AGATCT	1 cut(s)	1264
Bme18I	GGWCC	1 cut(s)	529
BmgT120I	GGNCC	2 cut(s)	529, 1361
BmiI	GGNNCC	2 cut(s)	86, 104
BmrI	ACTGGG	1 cut(s)	256
BmsI	GCATC	3 cut(s)	1151, 1387, 1467
BmtI	GCTAGC	1 cut(s)	1116
BmuI	ACTGGG	1 cut(s)	256
BpmI	CTGGAG	2 cut(s)	355, 1062
Bpu10I	CCTNAGC	1 cut(s)	927
BpuEI	CTTGAG	2 cut(s)	906, 1253
BsaHI	GRCGYC	1 cut(s)	762
BsaJI	CCNNGG	1 cut(s)	1107
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 832
Bse118I	RCCGGY	1 cut(s)	279
Bse1I	ACTGG	2 cut(s)	262, 536
Bse21I	CCTNAGG	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	1107
BseLI	CCNNNNNNNGG	2 cut(s)	268, 832
BseMII	CTCAG	6 cut(s)	89, 215, 810, 972, 1061, 1334
BseNI	ACTGG	2 cut(s)	262, 536
BseRI	GAGGAG	3 cut(s)	115, 656, 1529
BshFI	GGCC	3 cut(s)	878, 932, 1363
BsiHKAI	GWGCWC	3 cut(s)	733, 864, 1048
BsiSI	CCGG	1 cut(s)	280
BslFI	GGGAC	1 cut(s)	1303
BslI	CCNNNNNNNGG	2 cut(s)	268, 832
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	1303
BsnI	GGCC	3 cut(s)	878, 932, 1363
Bsp1286I	GDGCHC	3 cut(s)	733, 864, 1048
Bsp143I	GATC	2 cut(s)	743, 1264
BspACI	CCGC	3 cut(s)	142, 677, 1192
BspANI	GGCC	3 cut(s)	878, 932, 1363
BspCNI	CTCAG	6 cut(s)	90, 214, 809, 973, 1060, 1335
BspLI	GGNNCC	2 cut(s)	86, 104
BspMAI	CTGCAG	2 cut(s)	808, 1288
BspMI	ACCTGC	1 cut(s)	577
BspOI	GCTAGC	1 cut(s)	1116
BspPI	GGATC	1 cut(s)	751
BspQI	GCTCTTC	1 cut(s)	654
BsrBI	CCGCTC	2 cut(s)	142, 1194
BsrFI	RCCGGY	1 cut(s)	279
BsrI	ACTGG	2 cut(s)	262, 536
BssAI	RCCGGY	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	1107
BssMI	GATC	2 cut(s)	743, 1264
BssNI	GRCGYC	1 cut(s)	762
Bst6I	CTCTTC	2 cut(s)	633, 654
BstACI	GRCGYC	1 cut(s)	762
BstDEI	CTNAG	8 cut(s)	24, 98, 201, 796, 927, 981, 1047, 1343
BstDSI	CCRYGG	1 cut(s)	1107
BstH2I	RGCGCY	1 cut(s)	820
BstHHI	GCGC	2 cut(s)	253, 819
BstKTI	GATC	2 cut(s)	746, 1267
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	2 cut(s)	743, 1264
BstMWI	GCNNNNNNNGC	7 cut(s)	367, 556, 816, 879, 1052, 1292, 1433
BstNSI	RCATGY	3 cut(s)	332, 707, 1070
BstSFI	CTRYAG	2 cut(s)	804, 1284
BstX2I	RGATCY	1 cut(s)	1264
BstYI	RGATCY	1 cut(s)	1264
Bsu36I	CCTNAGG	1 cut(s)	201
BsuI	GTATCC	1 cut(s)	1409
BsuRI	GGCC	3 cut(s)	878, 932, 1363
BtgI	CCRYGG	1 cut(s)	1107
BveI	ACCTGC	1 cut(s)	577
CaiI	CAGNNNCTG	2 cut(s)	803, 1381
CfoI	GCGC	2 cut(s)	253, 819
Cfr10I	RCCGGY	1 cut(s)	279
Cfr13I	GGNCC	2 cut(s)	529, 1361
Csp6I	GTAC	1 cut(s)	647
CviAII	CATG	7 cut(s)	226, 329, 704, 708, 973, 1067, 1403
CviQI	GTAC	1 cut(s)	647
DdeI	CTNAG	8 cut(s)	24, 98, 201, 796, 927, 981, 1047, 1343
DpnI	GATC	2 cut(s)	745, 1266
DpnII	GATC	2 cut(s)	743, 1264
DraI	TTTAAA	1 cut(s)	1099
EaeI	YGGCCR	1 cut(s)	876
Eam1104I	CTCTTC	2 cut(s)	633, 654
EarI	CTCTTC	2 cut(s)	633, 654
Ecl136II	GAGCTC	1 cut(s)	1046
Eco24I	GRGCYC	1 cut(s)	1048
Eco47I	GGWCC	1 cut(s)	529
Eco53kI	GAGCTC	1 cut(s)	1046
Eco57I	CTGAAG	2 cut(s)	467, 1221
Eco81I	CCTNAGG	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	1046
EcoRI	GAATTC	1 cut(s)	1349
EcoT22I	ATGCAT	1 cut(s)	709
EcoT38I	GRGCYC	1 cut(s)	1048
FaeI	CATG	7 cut(s)	229, 332, 707, 711, 976, 1070, 1406
FaqI	GGGAC	1 cut(s)	1303
FatI	CATG	7 cut(s)	225, 328, 703, 707, 972, 1066, 1402
FauI	CCCGC	1 cut(s)	135
FblI	GTMKAC	1 cut(s)	351
FriOI	GRGCYC	1 cut(s)	1048
FspBI	CTAG	2 cut(s)	813, 1113
GlaI	GCGC	2 cut(s)	252, 818
GsuI	CTGGAG	2 cut(s)	355, 1062
HaeII	RGCGCY	1 cut(s)	820
HaeIII	GGCC	3 cut(s)	878, 932, 1363
HapII	CCGG	1 cut(s)	280
HhaI	GCGC	2 cut(s)	253, 819
Hin1I	GRCGYC	1 cut(s)	762
Hin1II	CATG	7 cut(s)	229, 332, 707, 711, 976, 1070, 1406
Hin6I	GCGC	2 cut(s)	251, 817
HinP1I	GCGC	2 cut(s)	251, 817
HincII	GTYRAC	4 cut(s)	115, 352, 541, 760
HindII	GTYRAC	4 cut(s)	115, 352, 541, 760
HindIII	AAGCTT	5 cut(s)	828, 871, 891, 994, 1425
HinfI	GANTC	2 cut(s)	977, 1231
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	6 cut(s)	74, 269, 286, 663, 790, 1114
Hpy166II	GTNNAC	4 cut(s)	115, 352, 541, 760
Hpy188I	TCNGA	8 cut(s)	99, 241, 313, 447, 982, 1030, 1201, 1476
Hpy188III	TCNNGA	3 cut(s)	334, 594, 842
Hpy8I	GTNNAC	4 cut(s)	115, 352, 541, 760
Hpy99I	CGWCG	1 cut(s)	241
HpyAV	CCTTC	6 cut(s)	30, 142, 214, 500, 678, 1297
HpyCH4IV	ACGT	1 cut(s)	762
HpyCH4V	TGCA	9 cut(s)	13, 287, 401, 707, 806, 1286, 1432, 1480, 1503
HpyF10VI	GCNNNNNNNGC	7 cut(s)	367, 556, 816, 879, 1052, 1292, 1433
HpyF3I	CTNAG	8 cut(s)	24, 98, 201, 796, 927, 981, 1047, 1343
HpySE526I	ACGT	1 cut(s)	762
Hsp92I	GRCGYC	1 cut(s)	762
Hsp92II	CATG	7 cut(s)	229, 332, 707, 711, 976, 1070, 1406
HspAI	GCGC	2 cut(s)	251, 817
Kzo9I	GATC	2 cut(s)	743, 1264
LguI	GCTCTTC	1 cut(s)	654
LmnI	GCTCC	7 cut(s)	17, 84, 102, 139, 728, 1043, 1312
LweI	GCATC	3 cut(s)	1151, 1387, 1467
MaeI	CTAG	2 cut(s)	813, 1113
MaeII	ACGT	1 cut(s)	762
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	2 cut(s)	745, 1266
MbiI	CCGCTC	2 cut(s)	142, 1194
MboI	GATC	2 cut(s)	743, 1264
MflI	RGATCY	1 cut(s)	1264
MhlI	GDGCHC	3 cut(s)	733, 864, 1048
MlsI	TGGCCA	1 cut(s)	878
MluNI	TGGCCA	1 cut(s)	878
MmeI	TCCRAC	5 cut(s)	219, 556, 706, 990, 1071
Mox20I	TGGCCA	1 cut(s)	878
Mph1103I	ATGCAT	1 cut(s)	709
MroXI	GAANNNNTTC	1 cut(s)	1371
MscI	TGGCCA	1 cut(s)	878
MseI	TTAA	3 cut(s)	461, 1098, 1496
MslI	CAYNNNNRTG	2 cut(s)	282, 776
Msp20I	TGGCCA	1 cut(s)	878
MspA1I	CMGCKG	3 cut(s)	547, 1040, 1506
MspI	CCGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	7 cut(s)	367, 556, 816, 879, 1052, 1292, 1433
NdeII	GATC	2 cut(s)	743, 1264
NheI	GCTAGC	1 cut(s)	1112
NlaIII	CATG	7 cut(s)	229, 332, 707, 711, 976, 1070, 1406
NlaIV	GGNNCC	2 cut(s)	86, 104
NmeAIII	GCCGAG	1 cut(s)	834
NmuCI	GTSAC	1 cut(s)	292
NsiI	ATGCAT	1 cut(s)	709
NspI	RCATGY	3 cut(s)	332, 707, 1070
OliI	CACNNNNGTG	1 cut(s)	282
PaeI	GCATGC	1 cut(s)	707
PciI	ACATGT	2 cut(s)	328, 1066
PciSI	GCTCTTC	1 cut(s)	654
PdmI	GAANNNNTTC	1 cut(s)	1371
PfeI	GAWTC	2 cut(s)	977, 1231
PflMI	CCANNNNNTGG	2 cut(s)	268, 832
PscI	ACATGT	2 cut(s)	328, 1066
PshBI	ATTAAT	1 cut(s)	1496
Psp124BI	GAGCTC	1 cut(s)	1048
PspN4I	GGNNCC	2 cut(s)	86, 104
PspPI	GGNCC	2 cut(s)	529, 1361
PstI	CTGCAG	2 cut(s)	808, 1288
PstNI	CAGNNNCTG	2 cut(s)	803, 1381
PsuI	RGATCY	1 cut(s)	1264
PvuII	CAGCTG	3 cut(s)	547, 1040, 1506
RsaI	GTAC	1 cut(s)	648
RsaNI	GTAC	1 cut(s)	647
RseI	CAYNNNNRTG	2 cut(s)	282, 776
SacI	GAGCTC	1 cut(s)	1048
SalI	GTCGAC	1 cut(s)	350
SapI	GCTCTTC	1 cut(s)	654
SaqAI	TTAA	3 cut(s)	461, 1098, 1496
Sau3AI	GATC	2 cut(s)	743, 1264
Sau96I	GGNCC	2 cut(s)	529, 1361
SduI	GDGCHC	3 cut(s)	733, 864, 1048
SfaNI	GCATC	3 cut(s)	1151, 1387, 1467
SfcI	CTRYAG	2 cut(s)	804, 1284
SgrAI	CRCCGGYG	1 cut(s)	279
SinI	GGWCC	1 cut(s)	529
SmiMI	CAYNNNNRTG	2 cut(s)	282, 776
SmlI	CTYRAG	2 cut(s)	921, 1268
SmoI	CTYRAG	2 cut(s)	921, 1268
SphI	GCATGC	1 cut(s)	707
SsiI	CCGC	3 cut(s)	142, 677, 1192
SspI	AATATT	2 cut(s)	1060, 1103
SspMI	CTAG	2 cut(s)	813, 1113
SstI	GAGCTC	1 cut(s)	1048
TaiI	ACGT	1 cut(s)	765
TaqI	TCGA	3 cut(s)	351, 593, 657
TfiI	GAWTC	2 cut(s)	977, 1231
Tru1I	TTAA	3 cut(s)	461, 1098, 1496
Tru9I	TTAA	3 cut(s)	461, 1098, 1496
TseFI	GTSAC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	9 cut(s)	17, 233, 357, 492, 903, 981, 1143, 1152, 1236
TspGWI	ACGGA	1 cut(s)	97
Van91I	CCANNNNNTGG	2 cut(s)	268, 832
VpaK11BI	GGWCC	1 cut(s)	529
VspI	ATTAAT	1 cut(s)	1496
XapI	RAATTY	5 cut(s)	403, 936, 1013, 1349, 1444
XceI	RCATGY	3 cut(s)	332, 707, 1070
XmiI	GTMKAC	1 cut(s)	351
XmnI	GAANNNNTTC	1 cut(s)	1371
XspI	CTAG	2 cut(s)	813, 1113
ZraI	GACGTC	1 cut(s)	763
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.