Rh3DG333600

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0016997
Physical Location & Seq
Forward (+)
37116371 .. 37118912
2542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG333600.1

Sequence Viewer

Length: 1011 bp
ATGGAGGTCCAAACAGTTGACCAGCTGCCAGCACAGCAGCCTGTTGAAAAATGTAGCATTAGGCAGGTATCGAGAGTGGAAGAAACAGGAGGACAGCGAGAAATAATTAGAGAAGAAGAGGAGGTGCAAGCTATCGAAGAGCAGCCTTCACCACCTCCTGCTGAACAATGTAGCATTGGGCATGCATGGAGTGAGGAAGAAGTTGGAGCACTCAACAAAGGATTGGGTAGTGAGGTTGACGTCCAAATCATTGAGGTGAAGCAATCACAATCCTCAGTTGCTGCAGGCTCTAGGCGCTCTATCCAAGCTTTGGGGTTTCTGGAAAGTTATCTCGGCGAGCACCAACAAAGCTTGGCCAGTACCAACGAAGCTTCAATCCCCAATTTGTATGAGGTTGCTCAAGCAAAGGCCAAAATTCAAAGGATTTCCACTCTCTCTATTGATGAAGTCATGGAATCTGAGTGTGTTCAAAGCTTCAAATCATCGTTGGAATTTTTGCTCAAATCTGACGACACAGCTGGAGCTCAGTCGGCAAATATTGAACATGTCTTGGGCAAGCTGGCTTTGTTGGAGTTTAAATATTCCACAGCTAGCAAAATCACCGATGAAGTGAATGAAGTGTCTAAAAGGAAGTTAGAGCTGGAACAAGAAGTGAAATACTATACTATCTGCTCATCTGAAGCTCAAAAGGAAGAATATGAATTGCTGAATCAAATCAATGGAAAAAAGTTGATGATAGAAGATCTCAAGGAAAAATTGGCTGCAGCGGAAGCATGCTTGAAGGAATTGGAGCAGTCCCTTGCCACACAGACAACCAAACTGAGTGAATTCAATTCCGGGCGTGAAAAGGTTCAGCGTCTGCTTTCTAATCATTGTATCCATGAGAACACTTCGTTGAAGAAAGCTTTGCAAGCTAAAAAGAATTTTCTGTCTGTTGAAGCAACTTGGGTTCAGATGCAGCAACTTCTCACATTAATTTGCAGCTGGAAAGAGGAGGCAGCAACCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

336

Amino Acids

37.45

Weight (kDa)

4.89

Isoelectric Point (pI)

51.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 243
Acc36I ACCTGC 1 cut(s) 55
AccB7I CCANNNNNTGG 1 cut(s) 310
AciI CCGC 1 cut(s) 767
AcoI YGGCCR 1 cut(s) 354
AcsI RAATTY 4 cut(s) 414, 491, 827, 922
AcuI CTGAAG 1 cut(s) 699
AcyI GRCGYC 1 cut(s) 240
AfaI GTAC 1 cut(s) 361
AfiI CCNNNNNNNGG 1 cut(s) 310
AflIII ACRYGT 1 cut(s) 544
Alw21I GWGCWC 3 cut(s) 211, 342, 526
AlwNI CAGNNNCTG 2 cut(s) 281, 859
AoxI GGCC 2 cut(s) 354, 408
ApeKI GCWGC 9 cut(s) 25, 37, 142, 281, 761, 764, 958, 981, 998
ApoI RAATTY 4 cut(s) 414, 491, 827, 922
AseI ATTAAT 1 cut(s) 974
Asp700I GAANNNNTTC 1 cut(s) 849
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 838
AsuHPI GGTGA 3 cut(s) 141, 268, 592
AsuNHI GCTAGC 1 cut(s) 590
AvaII GGWCC 1 cut(s) 7
BalI TGGCCA 1 cut(s) 356
BanII GRGCYC 1 cut(s) 526
Bbv12I GWGCWC 3 cut(s) 211, 342, 526
BbvI GCAGC 8 cut(s) 12, 49, 154, 268, 748, 776, 970, 993
BciVI GTATCC 1 cut(s) 887
BcnI CCSGG 1 cut(s) 838
BfaI CTAG 2 cut(s) 291, 591
BfmI CTRYAG 2 cut(s) 282, 762
BfoI RGCGCY 1 cut(s) 298
BfuAI ACCTGC 1 cut(s) 55
BfuI GTATCC 1 cut(s) 887
BglII AGATCT 1 cut(s) 742
BisI GCNGC 9 cut(s) 26, 38, 143, 282, 762, 765, 959, 982, 999
BlsI GCNGC 9 cut(s) 27, 39, 144, 283, 763, 766, 960, 983, 1000
Bme1390I CCNGG 1 cut(s) 838
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 838
BmsI GCATC 1 cut(s) 945
BmtI GCTAGC 1 cut(s) 594
BpmI CTGGAG 1 cut(s) 540
BpuEI CTTGAG 2 cut(s) 384, 731
BpuMI CCSGG 1 cut(s) 838
BsaHI GRCGYC 1 cut(s) 240
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMII CTCAG 4 cut(s) 288, 450, 539, 812
BseNI ACTGG 1 cut(s) 357
BseRI GAGGAG 2 cut(s) 134, 1007
BseXI GCAGC 8 cut(s) 12, 49, 154, 268, 748, 776, 970, 993
BshFI GGCC 2 cut(s) 356, 410
BsiHKAI GWGCWC 3 cut(s) 211, 342, 526
BsiSI CCGG 1 cut(s) 837
BslFI GGGAC 1 cut(s) 781
BslI CCNNNNNNNGG 1 cut(s) 310
BsmFI GGGAC 1 cut(s) 781
BsnI GGCC 2 cut(s) 356, 410
Bsp1286I GDGCHC 3 cut(s) 211, 342, 526
Bsp143I GATC 1 cut(s) 742
BspACI CCGC 1 cut(s) 767
BspANI GGCC 2 cut(s) 356, 410
BspCNI CTCAG 4 cut(s) 287, 451, 538, 813
BspMAI CTGCAG 2 cut(s) 286, 766
BspMI ACCTGC 1 cut(s) 55
BspOI GCTAGC 1 cut(s) 594
BspQI GCTCTTC 1 cut(s) 132
BsrI ACTGG 1 cut(s) 357
BssMI GATC 1 cut(s) 742
BssNI GRCGYC 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 2 cut(s) 111, 132
BstACI GRCGYC 1 cut(s) 240
BstDEI CTNAG 4 cut(s) 274, 459, 525, 821
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 1 cut(s) 745
BstMBI GATC 1 cut(s) 742
BstMWI GCNNNNNNNGC 5 cut(s) 34, 294, 530, 770, 911
BstNSI RCATGY 3 cut(s) 185, 548, 777
BstSCI CCNGG 1 cut(s) 836
BstSFI CTRYAG 2 cut(s) 282, 762
BstV1I GCAGC 8 cut(s) 12, 49, 154, 268, 748, 776, 970, 993
BstX2I RGATCY 1 cut(s) 742
BstYI RGATCY 1 cut(s) 742
BsuI GTATCC 1 cut(s) 887
BsuRI GGCC 2 cut(s) 356, 410
BveI ACCTGC 1 cut(s) 55
CaiI CAGNNNCTG 2 cut(s) 281, 859
CfoI GCGC 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 7
CseI GACGC 1 cut(s) 845
Csp6I GTAC 1 cut(s) 360
CviAII CATG 6 cut(s) 182, 186, 451, 545, 774, 881
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 4 cut(s) 274, 459, 525, 821
DpnI GATC 1 cut(s) 744
DpnII GATC 1 cut(s) 742
DraI TTTAAA 1 cut(s) 577
EaeI YGGCCR 1 cut(s) 354
Eam1104I CTCTTC 2 cut(s) 111, 132
EarI CTCTTC 2 cut(s) 111, 132
Ecl136II GAGCTC 1 cut(s) 524
Eco24I GRGCYC 1 cut(s) 526
Eco47I GGWCC 1 cut(s) 7
Eco53kI GAGCTC 1 cut(s) 524
Eco57I CTGAAG 1 cut(s) 699
EcoICRI GAGCTC 1 cut(s) 524
EcoRI GAATTC 1 cut(s) 827
EcoT22I ATGCAT 1 cut(s) 187
EcoT38I GRGCYC 1 cut(s) 526
FaeI CATG 6 cut(s) 185, 189, 454, 548, 777, 884
FaiI YATR 9 cut(s) 183, 187, 390, 452, 546, 663, 699, 775, 882
FaqI GGGAC 1 cut(s) 781
FatI CATG 6 cut(s) 181, 185, 450, 544, 773, 880
Fnu4HI GCNGC 9 cut(s) 26, 38, 143, 282, 762, 765, 959, 982, 999
FriOI GRGCYC 1 cut(s) 526
Fsp4HI GCNGC 9 cut(s) 26, 38, 143, 282, 762, 765, 959, 982, 999
FspBI CTAG 2 cut(s) 291, 591
GlaI GCGC 1 cut(s) 296
GluI GCNGC 9 cut(s) 26, 38, 143, 282, 762, 765, 959, 982, 999
GsuI CTGGAG 1 cut(s) 540
HaeII RGCGCY 1 cut(s) 298
HaeIII GGCC 2 cut(s) 356, 410
HapII CCGG 1 cut(s) 837
HgaI GACGC 1 cut(s) 845
HhaI GCGC 1 cut(s) 297
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 6 cut(s) 185, 189, 454, 548, 777, 884
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HincII GTYRAC 2 cut(s) 19, 238
HindII GTYRAC 2 cut(s) 19, 238
HindIII AAGCTT 5 cut(s) 306, 349, 369, 472, 903
HinfI GANTC 2 cut(s) 455, 709
HpaII CCGG 1 cut(s) 837
HphI GGTGA 3 cut(s) 141, 268, 592
Hpy166II GTNNAC 2 cut(s) 19, 238
Hpy188I TCNGA 4 cut(s) 460, 508, 679, 954
Hpy188III TCNNGA 2 cut(s) 72, 320
Hpy8I GTNNAC 2 cut(s) 19, 238
HpyAV CCTTC 2 cut(s) 156, 775
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 7 cut(s) 127, 185, 284, 764, 910, 958, 981
HpyF10VI GCNNNNNNNGC 5 cut(s) 34, 294, 530, 770, 911
HpyF3I CTNAG 4 cut(s) 274, 459, 525, 821
HpySE526I ACGT 1 cut(s) 240
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 6 cut(s) 185, 189, 454, 548, 777, 884
HspAI GCGC 1 cut(s) 295
Kzo9I GATC 1 cut(s) 742
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 3 cut(s) 206, 521, 790
Lsp1109I GCAGC 8 cut(s) 12, 49, 154, 268, 748, 776, 970, 993
LweI GCATC 1 cut(s) 945
MaeI CTAG 2 cut(s) 291, 591
MaeII ACGT 1 cut(s) 240
MalI GATC 1 cut(s) 744
MboI GATC 1 cut(s) 742
MboII GAAGA 8 cut(s) 92, 125, 128, 149, 209, 704, 752, 910
MflI RGATCY 1 cut(s) 742
MhlI GDGCHC 3 cut(s) 211, 342, 526
MlsI TGGCCA 1 cut(s) 356
MluNI TGGCCA 1 cut(s) 356
MmeI TCCRAC 3 cut(s) 184, 468, 549
Mox20I TGGCCA 1 cut(s) 356
Mph1103I ATGCAT 1 cut(s) 187
MroXI GAANNNNTTC 1 cut(s) 849
MscI TGGCCA 1 cut(s) 356
MseI TTAA 2 cut(s) 576, 974
MslI CAYNNNNRTG 1 cut(s) 254
Msp20I TGGCCA 1 cut(s) 356
MspA1I CMGCKG 4 cut(s) 25, 518, 767, 984
MspI CCGG 1 cut(s) 837
MspR9I CCNGG 1 cut(s) 838
MwoI GCNNNNNNNGC 5 cut(s) 34, 294, 530, 770, 911
NciI CCSGG 1 cut(s) 838
NdeII GATC 1 cut(s) 742
NheI GCTAGC 1 cut(s) 590
NlaIII CATG 6 cut(s) 185, 189, 454, 548, 777, 884
NmeAIII GCCGAG 1 cut(s) 312
NsiI ATGCAT 1 cut(s) 187
NspI RCATGY 3 cut(s) 185, 548, 777
PaeI GCATGC 2 cut(s) 185, 777
PciI ACATGT 1 cut(s) 544
PciSI GCTCTTC 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 849
PfeI GAWTC 2 cut(s) 455, 709
PflMI CCANNNNNTGG 1 cut(s) 310
PkrI GCNGC 9 cut(s) 27, 39, 144, 283, 763, 766, 960, 983, 1000
PscI ACATGT 1 cut(s) 544
PshBI ATTAAT 1 cut(s) 974
Psp124BI GAGCTC 1 cut(s) 526
PspPI GGNCC 1 cut(s) 7
PstI CTGCAG 2 cut(s) 286, 766
PstNI CAGNNNCTG 2 cut(s) 281, 859
PsuI RGATCY 1 cut(s) 742
PvuII CAGCTG 3 cut(s) 25, 518, 984
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
RseI CAYNNNNRTG 1 cut(s) 254
SacI GAGCTC 1 cut(s) 526
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 2 cut(s) 576, 974
SatI GCNGC 9 cut(s) 26, 38, 143, 282, 762, 765, 959, 982, 999
Sau3AI GATC 1 cut(s) 742
Sau96I GGNCC 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 838
SduI GDGCHC 3 cut(s) 211, 342, 526
SfaNI GCATC 1 cut(s) 945
SfcI CTRYAG 2 cut(s) 282, 762
SinI GGWCC 1 cut(s) 7
SmiMI CAYNNNNRTG 1 cut(s) 254
SmlI CTYRAG 2 cut(s) 399, 746
SmoI CTYRAG 2 cut(s) 399, 746
SphI GCATGC 2 cut(s) 185, 777
SsiI CCGC 1 cut(s) 767
SspI AATATT 2 cut(s) 538, 581
SspMI CTAG 2 cut(s) 291, 591
SstI GAGCTC 1 cut(s) 526
StyD4I CCNGG 1 cut(s) 836
TaaI ACNGT 1 cut(s) 16
TaiI ACGT 1 cut(s) 243
TaqI TCGA 2 cut(s) 71, 135
TfiI GAWTC 2 cut(s) 455, 709
Tru1I TTAA 2 cut(s) 576, 974
Tru9I TTAA 2 cut(s) 576, 974
TseI GCWGC 9 cut(s) 25, 37, 142, 281, 761, 764, 958, 981, 998
TspDTI ATGAA 4 cut(s) 459, 621, 630, 714
Van91I CCANNNNNTGG 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 7
VspI ATTAAT 1 cut(s) 974
XapI RAATTY 4 cut(s) 414, 491, 827, 922
XceI RCATGY 3 cut(s) 185, 548, 777
XmnI GAANNNNTTC 1 cut(s) 849
XspI CTAG 2 cut(s) 291, 591
ZraI GACGTC 1 cut(s) 241
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.