Plant mobile domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0491561 |
| rosa_laevigata | RLG00000022836 |
| rosa_multiflora | Rmu_sc0015320.1_g000002 |
| rosa_roxburghii | Rroxscaffold_6G00392900 |
| rosa_rugosa | Rorug03G0250300 |
| rosa_samantha | Rh3BG335100 Rh3BG335200 Rh3BG335700 Rh3CG331900 Rh3CG332000 Rh3CG332100 Rh3DG333600 Rh3DG333700 Rh3DG333800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 236 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 218 |
| AgsI | TTSAA | 1 cut(s) | 134 |
| Alw26I | GTCTC | 1 cut(s) | 13 |
| ApeKI | GCWGC | 1 cut(s) | 115 |
| AspLEI | GCGC | 1 cut(s) | 160 |
| AsuHPI | GGTGA | 1 cut(s) | 195 |
| BbvI | GCAGC | 1 cut(s) | 127 |
| BccI | CCATC | 1 cut(s) | 208 |
| BcoDI | GTCTC | 1 cut(s) | 13 |
| BfaI | CTAG | 1 cut(s) | 276 |
| BisI | GCNGC | 1 cut(s) | 116 |
| BlsI | GCNGC | 1 cut(s) | 117 |
| BmiI | GGNNCC | 1 cut(s) | 269 |
| BmrI | ACTGGG | 1 cut(s) | 249 |
| BmsI | GCATC | 1 cut(s) | 145 |
| BmuI | ACTGGG | 1 cut(s) | 249 |
| BpmI | CTGGAG | 1 cut(s) | 282 |
| BsaJI | CCNNGG | 1 cut(s) | 93 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 218 |
| Bse1I | ACTGG | 2 cut(s) | 194, 244 |
| Bse3DI | GCAATG | 1 cut(s) | 206 |
| BseDI | CCNNGG | 1 cut(s) | 93 |
| BseGI | GGATG | 1 cut(s) | 21 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 218 |
| BseMI | GCAATG | 1 cut(s) | 206 |
| BseNI | ACTGG | 2 cut(s) | 194, 244 |
| BseXI | GCAGC | 1 cut(s) | 127 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 218 |
| BsmAI | GTCTC | 1 cut(s) | 13 |
| BsmBI | CGTCTC | 1 cut(s) | 13 |
| Bsp19I | CCATGG | 1 cut(s) | 93 |
| BspLI | GGNNCC | 1 cut(s) | 269 |
| BsrDI | GCAATG | 1 cut(s) | 206 |
| BsrI | ACTGG | 2 cut(s) | 194, 244 |
| BssECI | CCNNGG | 1 cut(s) | 93 |
| BssT1I | CCWWGG | 1 cut(s) | 93 |
| Bst4CI | ACNGT | 2 cut(s) | 170, 181 |
| BstDSI | CCRYGG | 1 cut(s) | 93 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 216 |
| BstF5I | GGATG | 1 cut(s) | 21 |
| BstHHI | GCGC | 1 cut(s) | 160 |
| BstMAI | GTCTC | 1 cut(s) | 13 |
| BstV1I | GCAGC | 1 cut(s) | 127 |
| BtgI | CCRYGG | 1 cut(s) | 93 |
| BtsCI | GGATG | 1 cut(s) | 21 |
| BtsIMutI | CAGTG | 1 cut(s) | 13 |
| CfoI | GCGC | 1 cut(s) | 160 |
| CviAII | CATG | 1 cut(s) | 94 |
| CviJI | RGCY | 1 cut(s) | 118 |
| CviKI_1 | RGCY | 1 cut(s) | 118 |
| DraI | TTTAAA | 1 cut(s) | 108 |
| Eco130I | CCWWGG | 1 cut(s) | 93 |
| Eco32I | GATATC | 1 cut(s) | 67 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 216 |
| EcoRV | GATATC | 1 cut(s) | 67 |
| EcoT14I | CCWWGG | 1 cut(s) | 93 |
| ErhI | CCWWGG | 1 cut(s) | 93 |
| Esp3I | CGTCTC | 1 cut(s) | 13 |
| FaeI | CATG | 1 cut(s) | 97 |
| FaiI | YATR | 6 cut(s) | 32, 34, 95, 149, 225, 236 |
| FatI | CATG | 1 cut(s) | 93 |
| FauNDI | CATATG | 1 cut(s) | 32 |
| Fnu4HI | GCNGC | 1 cut(s) | 116 |
| FokI | GGATG | 1 cut(s) | 28 |
| Fsp4HI | GCNGC | 1 cut(s) | 116 |
| FspBI | CTAG | 1 cut(s) | 276 |
| GlaI | GCGC | 1 cut(s) | 159 |
| GluI | GCNGC | 1 cut(s) | 116 |
| GsuI | CTGGAG | 1 cut(s) | 282 |
| HhaI | GCGC | 1 cut(s) | 160 |
| Hin1II | CATG | 1 cut(s) | 97 |
| Hin6I | GCGC | 1 cut(s) | 158 |
| HinP1I | GCGC | 1 cut(s) | 158 |
| HinfI | GANTC | 1 cut(s) | 89 |
| HphI | GGTGA | 1 cut(s) | 195 |
| Hpy188I | TCNGA | 1 cut(s) | 88 |
| Hpy188III | TCNNGA | 1 cut(s) | 261 |
| HpyAV | CCTTC | 1 cut(s) | 37 |
| HpyCH4III | ACNGT | 2 cut(s) | 170, 181 |
| HpyCH4V | TGCA | 2 cut(s) | 36, 115 |
| Hsp92II | CATG | 1 cut(s) | 97 |
| HspAI | GCGC | 1 cut(s) | 158 |
| LpnPI | CCDG | 4 cut(s) | 132, 207, 225, 246 |
| Lsp1109I | GCAGC | 1 cut(s) | 127 |
| LweI | GCATC | 1 cut(s) | 145 |
| MaeI | CTAG | 1 cut(s) | 276 |
| MboII | GAAGA | 2 cut(s) | 61, 75 |
| MluCI | AATT | 2 cut(s) | 103, 172 |
| MlyI | GAGTC | 1 cut(s) | 98 |
| MnlI | CCTC | 3 cut(s) | 212, 220, 257 |
| MseI | TTAA | 1 cut(s) | 107 |
| NcoI | CCATGG | 1 cut(s) | 93 |
| NdeI | CATATG | 1 cut(s) | 32 |
| NlaIII | CATG | 1 cut(s) | 97 |
| NlaIV | GGNNCC | 1 cut(s) | 269 |
| PkrI | GCNGC | 1 cut(s) | 117 |
| PleI | GAGTC | 1 cut(s) | 97 |
| PpsI | GAGTC | 1 cut(s) | 97 |
| PsiI | TTATAA | 1 cut(s) | 236 |
| PspN4I | GGNNCC | 1 cut(s) | 269 |
| SaqAI | TTAA | 1 cut(s) | 107 |
| SatI | GCNGC | 1 cut(s) | 116 |
| SchI | GAGTC | 1 cut(s) | 98 |
| SetI | ASST | 2 cut(s) | 223, 281 |
| SfaNI | GCATC | 1 cut(s) | 145 |
| SgeI | CNNG | 8 cut(s) | 100, 106, 124, 131, 153, 206, 252, 273 |
| Sse9I | AATT | 2 cut(s) | 103, 172 |
| SspMI | CTAG | 1 cut(s) | 276 |
| StyI | CCWWGG | 1 cut(s) | 93 |
| TaaI | ACNGT | 2 cut(s) | 170, 181 |
| TaqI | TCGA | 1 cut(s) | 53 |
| TasI | AATT | 2 cut(s) | 103, 172 |
| Tru1I | TTAA | 1 cut(s) | 107 |
| Tru9I | TTAA | 1 cut(s) | 107 |
| TscAI | CASTG | 1 cut(s) | 13 |
| TseI | GCWGC | 1 cut(s) | 115 |
| TspDTI | ATGAA | 2 cut(s) | 19, 71 |
| TspGWI | ACGGA | 1 cut(s) | 62 |
| TspRI | CASTG | 1 cut(s) | 13 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 216 |
| XspI | CTAG | 1 cut(s) | 276 |