Rh3BG335700

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0016997
Physical Location & Seq
Forward (+)
35627786 .. 35642681
14896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG335700.1

Sequence Viewer

Length: 1464 bp
ATGAAGAATGTGCAAGGAGGTGCTAAGATGGGGAGAAGGAGACAAGAGGGTTGTGAAAATGGTGATGGAGGCGAGAAGAAACGGAGCCGAACGGGTCTGAGGAGCCATAAAGTTGACAACTTCAGTGAGTTAGAGTGGGAGCGGGGGAAGGGTAAAAGCGGTGGGAGGGTTAGGGTCAGTTTATCAAGTGGTAAGAAGCCGCAGGGAGAGCCAGAGAATGTTGGGTCGTCGGAAGCTACGGCGCAGACAACCCAGTTCTTGGTTTTTCACCGGCGTACTGCATTTGTCACCGAGCCTCTGAAGAACTTTGAATTGAGAAATTGTGAAAATGAAAGAATTGAGCATGTCGAGAGAGAGGAAAGCAGAGAAAGACAGAAAGAAGGGAGGGAAGAAGAAATGGAGGTCCAAACAGTTGACCAGCTGCCAGCACAGCAGCCTGTTGAAAAATGTAGCATTAGGCAGGTATCGAGAGTGGAAGAAACAGGAGGACAGCAAGAAATAATTAGAGAAGAAGAGGAGGTGCAAGCTATTGAAGAGCAGCCTTCACCACCGCCTGCAGCATTGGGCATGCATGGAGTGAGGAAGAAGTTGGAGCACCAAACAAAGGATCGGGTAGTGAGGTTGACATCCAAATCATTGAGTCTAGGCGCTCTATCCAAGCTTTGGGGTTTCTGGAAAGTTATCTCGGCGAGCACCAATGAAGCTTCAATCCCCAATTTGTATGAGGTTGCTCAAGCTAAGGCCAAAATTCAAAGGATTTCCACTCTCTCTATTGATGAAGTCATGGAATCTGAGTGTGTTCAAAGCTTCAAATCATCGTTGGATTTTTTGCTCAAATCTGATGACACAGCTGGAGCTCAGTCGGCAAATATTGAACATGTCTTGGGCAAGCTGGCTTTGTTGGAGTTTAAATATTCCAAAGCTAGCAAAGTCACCGATGAAGTGAATGAAGCATATAAAAGGAAGTTAGAGCTGGAACAAGAAGTGAAATACTATACTATCCGCTCATCTGAAGCTCAAAAGGAAGAATATGAATTGCTGAATCAAATCAATGGAAAAAAGTTGATGATACAAGATCTCAAGGAAAAATTGGCTGCAGAGGAAACATGCTTGAAGGAATTGGAGCAGTTCCATGCCACACAGACAATCAAACTGAGTGAATTCAATTCTGGGCGTGTAAAGGTTCAGCATCTGCTTTCTAATCATTTAATCCATGAGAACACTTCGTTGAAGAAAGCTTTAGGGATTGAGAAGTTTGGAAGTAGCACAGCTACAATTGCAGTACTGGGTCATTTTTCAACTGCCCCTGCTGCAAGGGCAAGTTTTTGTAAAGCCTCCCAAACATTGCCATTTCAGGACCGTGATCCTAATTTATCTATTAACTATCAATTCTTTTCTACTCAGTTCCTTGTCTTGGCAGTTTATGCTTCTGAGCCACAAGTTCATGATATTGTCAAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

487

Amino Acids

54.81

Weight (kDa)

6.9

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 451
AccB7I CCANNNNNTGG 2 cut(s) 259, 663
AccBSI CCGCTC 2 cut(s) 142, 1005
AciI CCGC 5 cut(s) 142, 159, 200, 551, 1003
AclWI GGATC 2 cut(s) 615, 1358
AcsI RAATTY 2 cut(s) 747, 1160
AcuI CTGAAG 3 cut(s) 106, 320, 1032
AfaI GTAC 2 cut(s) 277, 1284
AfiI CCNNNNNNNGG 4 cut(s) 259, 604, 663, 1414
AflIII ACRYGT 1 cut(s) 877
Alw21I GWGCWC 3 cut(s) 597, 695, 859
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 2 cut(s) 615, 1358
AlwNI CAGNNNCTG 1 cut(s) 1192
AoxI GGCC 1 cut(s) 741
ApeKI GCWGC 6 cut(s) 421, 433, 538, 557, 1094, 1310
ApoI RAATTY 2 cut(s) 747, 1160
AspLEI GCGC 2 cut(s) 244, 650
AspS9I GGNCC 2 cut(s) 403, 1357
AsuHPI GGTGA 5 cut(s) 74, 260, 280, 537, 925
AsuNHI GCTAGC 1 cut(s) 923
AvaII GGWCC 2 cut(s) 403, 1357
BanII GRGCYC 1 cut(s) 859
Bbv12I GWGCWC 3 cut(s) 597, 695, 859
BbvI GCAGC 6 cut(s) 408, 445, 550, 569, 1081, 1297
BccI CCATC 2 cut(s) 22, 59
BceAI ACGGC 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 2 cut(s) 644, 924
BfmI CTRYAG 2 cut(s) 555, 1095
BfoI RGCGCY 1 cut(s) 651
BfuAI ACCTGC 1 cut(s) 451
BglII AGATCT 1 cut(s) 1075
BisI GCNGC 7 cut(s) 200, 422, 434, 539, 558, 1095, 1311
BlsI GCNGC 7 cut(s) 201, 423, 435, 540, 559, 1096, 1312
BmcAI AGTACT 1 cut(s) 1284
Bme18I GGWCC 2 cut(s) 403, 1357
BmgT120I GGNCC 2 cut(s) 403, 1357
BmiI GGNNCC 2 cut(s) 86, 104
BmrI ACTGGG 2 cut(s) 247, 1295
BmsI GCATC 1 cut(s) 1198
BmtI GCTAGC 1 cut(s) 927
BmuI ACTGGG 2 cut(s) 247, 1295
BpmI CTGGAG 1 cut(s) 873
Bpu10I CCTNAGC 1 cut(s) 738
BpuEI CTTGAG 2 cut(s) 717, 1064
Bsc4I CCNNNNNNNGG 4 cut(s) 259, 604, 663, 1414
Bse118I RCCGGY 1 cut(s) 270
Bse1I ACTGG 2 cut(s) 253, 1290
Bse3DI GCAATG 1 cut(s) 1343
BseGI GGATG 1 cut(s) 626
BseLI CCNNNNNNNGG 4 cut(s) 259, 604, 663, 1414
BseMI GCAATG 1 cut(s) 1343
BseMII CTCAG 6 cut(s) 89, 783, 872, 1145, 1415, 1422
BseNI ACTGG 2 cut(s) 253, 1290
BseRI GAGGAG 2 cut(s) 115, 530
BseXI GCAGC 6 cut(s) 408, 445, 550, 569, 1081, 1297
BshFI GGCC 1 cut(s) 743
BsiHKAI GWGCWC 3 cut(s) 597, 695, 859
BsiSI CCGG 1 cut(s) 271
BslI CCNNNNNNNGG 4 cut(s) 259, 604, 663, 1414
BsmAI GTCTC 1 cut(s) 34
BsnI GGCC 1 cut(s) 743
Bsp1286I GDGCHC 3 cut(s) 597, 695, 859
Bsp143I GATC 3 cut(s) 607, 1075, 1363
BspACI CCGC 5 cut(s) 142, 159, 200, 551, 1003
BspANI GGCC 1 cut(s) 743
BspCNI CTCAG 6 cut(s) 90, 784, 871, 1146, 1414, 1423
BspHI TCATGA 1 cut(s) 1444
BspLI GGNNCC 2 cut(s) 86, 104
BspMAI CTGCAG 2 cut(s) 559, 1099
BspMI ACCTGC 1 cut(s) 451
BspOI GCTAGC 1 cut(s) 927
BspPI GGATC 2 cut(s) 615, 1358
BspQI GCTCTTC 1 cut(s) 528
BsrBI CCGCTC 2 cut(s) 142, 1005
BsrDI GCAATG 1 cut(s) 1343
BsrFI RCCGGY 1 cut(s) 270
BsrI ACTGG 2 cut(s) 253, 1290
BssAI RCCGGY 1 cut(s) 270
BssMI GATC 3 cut(s) 607, 1075, 1363
Bst4CI ACNGT 2 cut(s) 412, 1361
Bst6I CTCTTC 2 cut(s) 507, 528
BstAPI GCANNNNNTGC 1 cut(s) 1424
BstC8I GCNNGC 8 cut(s) 426, 525, 555, 569, 691, 890, 894, 925
BstDEI CTNAG 8 cut(s) 24, 98, 738, 792, 858, 1154, 1401, 1431
BstF5I GGATG 1 cut(s) 626
BstH2I RGCGCY 1 cut(s) 651
BstHHI GCGC 2 cut(s) 244, 650
BstKTI GATC 3 cut(s) 610, 1078, 1366
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 3 cut(s) 607, 1075, 1363
BstMWI GCNNNNNNNGC 7 cut(s) 208, 430, 863, 1277, 1310, 1316, 1424
BstNSI RCATGY 4 cut(s) 347, 571, 881, 1110
BstSFI CTRYAG 2 cut(s) 555, 1095
BstV1I GCAGC 6 cut(s) 408, 445, 550, 569, 1081, 1297
BstX2I RGATCY 1 cut(s) 1075
BstYI RGATCY 1 cut(s) 1075
BsuRI GGCC 1 cut(s) 743
BtsCI GGATG 1 cut(s) 626
BtsIMutI CAGTG 1 cut(s) 130
BveI ACCTGC 1 cut(s) 451
Cac8I GCNNGC 8 cut(s) 426, 525, 555, 569, 691, 890, 894, 925
CaiI CAGNNNCTG 1 cut(s) 1192
CciI TCATGA 1 cut(s) 1444
CfoI GCGC 2 cut(s) 244, 650
Cfr10I RCCGGY 1 cut(s) 270
Cfr13I GGNCC 2 cut(s) 403, 1357
Csp6I GTAC 2 cut(s) 276, 1283
CviAII CATG 9 cut(s) 344, 568, 572, 784, 878, 1107, 1133, 1214, 1445
CviQI GTAC 2 cut(s) 276, 1283
DdeI CTNAG 8 cut(s) 24, 98, 738, 792, 858, 1154, 1401, 1431
DpnI GATC 3 cut(s) 609, 1077, 1365
DpnII GATC 3 cut(s) 607, 1075, 1363
DraI TTTAAA 1 cut(s) 910
Eam1104I CTCTTC 2 cut(s) 507, 528
EarI CTCTTC 2 cut(s) 507, 528
Ecl136II GAGCTC 1 cut(s) 857
Eco24I GRGCYC 1 cut(s) 859
Eco47I GGWCC 2 cut(s) 403, 1357
Eco53kI GAGCTC 1 cut(s) 857
Eco57I CTGAAG 3 cut(s) 106, 320, 1032
EcoICRI GAGCTC 1 cut(s) 857
EcoRI GAATTC 1 cut(s) 1160
EcoT22I ATGCAT 1 cut(s) 573
EcoT38I GRGCYC 1 cut(s) 859
FaeI CATG 9 cut(s) 347, 571, 575, 787, 881, 1110, 1136, 1217, 1448
FatI CATG 9 cut(s) 343, 567, 571, 783, 877, 1106, 1132, 1213, 1444
FauI CCCGC 1 cut(s) 135
Fnu4HI GCNGC 7 cut(s) 200, 422, 434, 539, 558, 1095, 1311
FokI GGATG 1 cut(s) 613
FriOI GRGCYC 1 cut(s) 859
Fsp4HI GCNGC 7 cut(s) 200, 422, 434, 539, 558, 1095, 1311
FspBI CTAG 2 cut(s) 644, 924
GlaI GCGC 2 cut(s) 243, 649
GluI GCNGC 7 cut(s) 200, 422, 434, 539, 558, 1095, 1311
GsuI CTGGAG 1 cut(s) 873
HaeII RGCGCY 1 cut(s) 651
HaeIII GGCC 1 cut(s) 743
HapII CCGG 1 cut(s) 271
HhaI GCGC 2 cut(s) 244, 650
Hin1II CATG 9 cut(s) 347, 571, 575, 787, 881, 1110, 1136, 1217, 1448
Hin6I GCGC 2 cut(s) 242, 648
HinP1I GCGC 2 cut(s) 242, 648
HincII GTYRAC 3 cut(s) 115, 415, 624
HindII GTYRAC 3 cut(s) 115, 415, 624
HindIII AAGCTT 4 cut(s) 659, 702, 805, 1236
HinfI GANTC 3 cut(s) 640, 788, 1042
HpaII CCGG 1 cut(s) 271
HphI GGTGA 5 cut(s) 74, 260, 280, 537, 925
Hpy166II GTNNAC 3 cut(s) 115, 415, 624
Hpy188I TCNGA 7 cut(s) 99, 232, 300, 793, 841, 1012, 1432
Hpy188III TCNNGA 5 cut(s) 349, 468, 673, 1355, 1445
Hpy8I GTNNAC 3 cut(s) 115, 415, 624
Hpy99I CGWCG 1 cut(s) 232
HpyAV CCTTC 5 cut(s) 30, 142, 374, 552, 1108
HpyCH4III ACNGT 2 cut(s) 412, 1361
HpyCH4V TGCA 8 cut(s) 13, 281, 523, 557, 571, 1097, 1280, 1313
HpyF10VI GCNNNNNNNGC 7 cut(s) 208, 430, 863, 1277, 1310, 1316, 1424
HpyF3I CTNAG 8 cut(s) 24, 98, 738, 792, 858, 1154, 1401, 1431
Hsp92II CATG 9 cut(s) 347, 571, 575, 787, 881, 1110, 1136, 1217, 1448
HspAI GCGC 2 cut(s) 242, 648
Kzo9I GATC 3 cut(s) 607, 1075, 1363
LguI GCTCTTC 1 cut(s) 528
LmnI GCTCC 6 cut(s) 84, 102, 139, 592, 854, 1123
Lsp1109I GCAGC 6 cut(s) 408, 445, 550, 569, 1081, 1297
LweI GCATC 1 cut(s) 1198
MaeI CTAG 2 cut(s) 644, 924
MaeIII GTNAC 2 cut(s) 286, 931
MalI GATC 3 cut(s) 609, 1077, 1365
MbiI CCGCTC 2 cut(s) 142, 1005
MboI GATC 3 cut(s) 607, 1075, 1363
MfeI CAATTG 1 cut(s) 1275
MflI RGATCY 1 cut(s) 1075
MhlI GDGCHC 3 cut(s) 597, 695, 859
MlyI GAGTC 1 cut(s) 649
MmeI TCCRAC 4 cut(s) 210, 570, 801, 882
Mph1103I ATGCAT 1 cut(s) 573
MseI TTAA 3 cut(s) 909, 1208, 1380
MspA1I CMGCKG 2 cut(s) 421, 851
MspI CCGG 1 cut(s) 271
MunI CAATTG 1 cut(s) 1275
MwoI GCNNNNNNNGC 7 cut(s) 208, 430, 863, 1277, 1310, 1316, 1424
NdeII GATC 3 cut(s) 607, 1075, 1363
NheI GCTAGC 1 cut(s) 923
NlaIII CATG 9 cut(s) 347, 571, 575, 787, 881, 1110, 1136, 1217, 1448
NlaIV GGNNCC 2 cut(s) 86, 104
NmeAIII GCCGAG 1 cut(s) 665
NmuCI GTSAC 2 cut(s) 286, 931
NsiI ATGCAT 1 cut(s) 573
NspI RCATGY 4 cut(s) 347, 571, 881, 1110
PaeI GCATGC 1 cut(s) 571
PagI TCATGA 1 cut(s) 1444
PciI ACATGT 1 cut(s) 877
PciSI GCTCTTC 1 cut(s) 528
PfeI GAWTC 2 cut(s) 788, 1042
PflMI CCANNNNNTGG 2 cut(s) 259, 663
PkrI GCNGC 7 cut(s) 201, 423, 435, 540, 559, 1096, 1312
PleI GAGTC 1 cut(s) 648
PpsI GAGTC 1 cut(s) 648
PscI ACATGT 1 cut(s) 877
Psp124BI GAGCTC 1 cut(s) 859
PspN4I GGNNCC 2 cut(s) 86, 104
PspPI GGNCC 2 cut(s) 403, 1357
PstI CTGCAG 2 cut(s) 559, 1099
PstNI CAGNNNCTG 1 cut(s) 1192
PsuI RGATCY 1 cut(s) 1075
PvuII CAGCTG 2 cut(s) 421, 851
RsaI GTAC 2 cut(s) 277, 1284
RsaNI GTAC 2 cut(s) 276, 1283
SacI GAGCTC 1 cut(s) 859
SapI GCTCTTC 1 cut(s) 528
SaqAI TTAA 3 cut(s) 909, 1208, 1380
SatI GCNGC 7 cut(s) 200, 422, 434, 539, 558, 1095, 1311
Sau3AI GATC 3 cut(s) 607, 1075, 1363
Sau96I GGNCC 2 cut(s) 403, 1357
ScaI AGTACT 1 cut(s) 1284
SchI GAGTC 1 cut(s) 649
SduI GDGCHC 3 cut(s) 597, 695, 859
SfaNI GCATC 1 cut(s) 1198
SfcI CTRYAG 2 cut(s) 555, 1095
SgrAI CRCCGGYG 1 cut(s) 270
SinI GGWCC 2 cut(s) 403, 1357
SmlI CTYRAG 2 cut(s) 732, 1079
SmoI CTYRAG 2 cut(s) 732, 1079
SphI GCATGC 1 cut(s) 571
SsiI CCGC 5 cut(s) 142, 159, 200, 551, 1003
SspI AATATT 2 cut(s) 871, 914
SspMI CTAG 2 cut(s) 644, 924
SstI GAGCTC 1 cut(s) 859
TaaI ACNGT 2 cut(s) 412, 1361
TaqI TCGA 2 cut(s) 348, 467
TatI WGTACW 1 cut(s) 1282
TauI GCSGC 1 cut(s) 202
TfiI GAWTC 2 cut(s) 788, 1042
Tru1I TTAA 3 cut(s) 909, 1208, 1380
Tru9I TTAA 3 cut(s) 909, 1208, 1380
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 2 cut(s) 286, 931
TseI GCWGC 6 cut(s) 421, 433, 538, 557, 1094, 1310
Tsp45I GTSAC 2 cut(s) 286, 931
TspDTI ATGAA 8 cut(s) 17, 345, 714, 792, 954, 963, 1047, 1433
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 1 cut(s) 130
Van91I CCANNNNNTGG 2 cut(s) 259, 663
VpaK11BI GGWCC 2 cut(s) 403, 1357
XapI RAATTY 2 cut(s) 747, 1160
XceI RCATGY 4 cut(s) 347, 571, 881, 1110
XspI CTAG 2 cut(s) 644, 924
ZrmI AGTACT 1 cut(s) 1284
Zsp2I ATGCAT 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.