RchiOBHm_Chr3g0491791

PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0008317
Physical Location & Seq
Forward (+)
38556093 .. 38557244
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 855 bp
ATGTACTCTTTACCTGCTTATGCGTTCATAGCGCAAGACTTTACTACTCAAGTTACGTTATATACTCATCACCAATACATCACAGGATTCATTATGACAGGGGCTTTTGCTCACGGAGCTATATTTTTTATTAGAGATTACAACCCGGAACAAAATGAAGATAATGTAATGGCAAGAATGTTAGACCACAAAGAAGCTATCATATCCCATTTAAGTTGGGCCAGTCTCTTTTTAGGGTTCCATACTTTGGGCCTTTATGTTCATAATGATGTCATGCTTGCTTTTGGTACTCCGGAGAAACAAATCTTGATCGAACCTATATTTGCTCAATGGATACAATCTGCTCATGGTAAAACTGCATATGGGTTCGATGTACTTTTATCTTCAACAAATGGTCCAGCGTTCAATGCTGGTCAAAGCATATGGTTACCTGGTTGGTTAAATGCTGTTAATGAGAATAGTAATTCACTATTCTTAACAATAGGACCGGGAGACTTCTTGGTTCATCATGCTATTGCTCTAGGTTTACATATCAATGTAGTTGATCTTAGTAAAGGGTGCTTTAGATGCACGTGTTTATCGGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGGGCTATTGGATTTATGTTCTTAATTTCCTGGCGGGGGTATTGGCAAGAATTGATTGAAACTTTAGCCTGGGCTCATGAACGCACACCTTTAGCTAATTTGATTCAATGGAGAGATAAACCGGTCACTCTTTCTATTGTACAAGCGAGATTAGTTGGATTAGCCCACCTTTCTGTCGGTTATATATTTACTTATGCAGCTTTCTTGATTGCCTCTACATCGGGCAAGTTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
PsaA_PsaB

Protein Analysis

284

Amino Acids

31.95

Weight (kDa)

6.24

Isoelectric Point (pI)

23.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsaA_PsaB PF00223 1 - 188 9.2e-88 Photosystem I psaA/psaB protein
PsaA_PsaB PF00223 188 - 277 3.9e-44 Photosystem I psaA/psaB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 22
AccB7I CCANNNNNTGG 1 cut(s) 247
AccIII TCCGGA 1 cut(s) 292
AciI CCGC 1 cut(s) 652
AcvI CACGTG 1 cut(s) 573
AfaI GTAC 4 cut(s) 5, 289, 375, 759
AfiI CCNNNNNNNGG 2 cut(s) 247, 654
AflIII ACRYGT 1 cut(s) 572
AgeI ACCGGT 1 cut(s) 739
AgsI TTSAA 4 cut(s) 387, 406, 677, 725
AjnI CCWGG 3 cut(s) 430, 647, 686
AluBI AGCT 4 cut(s) 119, 197, 713, 818
AluI AGCT 4 cut(s) 119, 197, 713, 818
Alw26I GTCTC 2 cut(s) 230, 486
Aor13HI TCCGGA 1 cut(s) 292
AoxI GGCC 2 cut(s) 219, 250
ApeKI GCWGC 1 cut(s) 815
ArsI GACNNNNNNTTYG 2 cut(s) 600, 632
AsiGI ACCGGT 1 cut(s) 739
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 4 cut(s) 219, 250, 395, 485
AsuC2I CCSGG 2 cut(s) 146, 489
AsuHPI GGTGA 1 cut(s) 62
AvaII GGWCC 2 cut(s) 395, 485
BanII GRGCYC 1 cut(s) 694
BbrPI CACGTG 1 cut(s) 573
BbvI GCAGC 1 cut(s) 827
BciT130I CCWGG 3 cut(s) 432, 649, 688
BciVI GTATCC 1 cut(s) 327
BcnI CCSGG 2 cut(s) 146, 489
BcoDI GTCTC 2 cut(s) 230, 486
BfaI CTAG 1 cut(s) 521
BfuAI ACCTGC 1 cut(s) 22
BfuI GTATCC 1 cut(s) 327
BisI GCNGC 1 cut(s) 816
BlsI GCNGC 1 cut(s) 817
Bme1390I CCNGG 5 cut(s) 146, 432, 489, 649, 688
Bme18I GGWCC 2 cut(s) 395, 485
BmgT120I GGNCC 4 cut(s) 219, 250, 395, 485
BmiI GGNNCC 1 cut(s) 239
BmrFI CCNGG 5 cut(s) 146, 432, 489, 649, 688
BmsI GCATC 1 cut(s) 557
BpuEI CTTGAG 1 cut(s) 33
BpuMI CCSGG 2 cut(s) 146, 489
BsaAI YACGTR 1 cut(s) 573
BsaJI CCNNGG 1 cut(s) 687
BsaWI WCCGGW 2 cut(s) 292, 739
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 654
Bse118I RCCGGY 1 cut(s) 739
Bse1I ACTGG 1 cut(s) 222
BseAI TCCGGA 1 cut(s) 292
BseBI CCWGG 3 cut(s) 432, 649, 688
BseDI CCNNGG 1 cut(s) 687
BseGI GGATG 1 cut(s) 600
BseLI CCNNNNNNNGG 2 cut(s) 247, 654
BseNI ACTGG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 827
BshFI GGCC 2 cut(s) 221, 252
BshTI ACCGGT 1 cut(s) 739
BsiSI CCGG 4 cut(s) 146, 293, 488, 740
BslI CCNNNNNNNGG 2 cut(s) 247, 654
BsmAI GTCTC 2 cut(s) 230, 486
BsnI GGCC 2 cut(s) 221, 252
Bsp1286I GDGCHC 1 cut(s) 694
Bsp13I TCCGGA 1 cut(s) 292
Bsp1407I TGTACA 1 cut(s) 757
Bsp143I GATC 2 cut(s) 309, 544
BspACI CCGC 1 cut(s) 652
BspANI GGCC 2 cut(s) 221, 252
BspEI TCCGGA 1 cut(s) 292
BspHI TCATGA 1 cut(s) 694
BspLI GGNNCC 1 cut(s) 239
BspMI ACCTGC 1 cut(s) 22
BsrFI RCCGGY 1 cut(s) 739
BsrGI TGTACA 1 cut(s) 757
BsrI ACTGG 1 cut(s) 222
BssAI RCCGGY 1 cut(s) 739
BssECI CCNNGG 1 cut(s) 687
BssMI GATC 2 cut(s) 309, 544
Bst2UI CCWGG 3 cut(s) 432, 649, 688
BstAUI TGTACA 1 cut(s) 757
BstBAI YACGTR 1 cut(s) 573
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 1 cut(s) 548
BstEII GGTNACC 1 cut(s) 426
BstF5I GGATG 1 cut(s) 600
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 2 cut(s) 312, 547
BstMAI GTCTC 2 cut(s) 230, 486
BstMBI GATC 2 cut(s) 309, 544
BstMWI GCNNNNNNNGC 4 cut(s) 29, 116, 407, 567
BstNI CCWGG 3 cut(s) 432, 649, 688
BstPI GGTNACC 1 cut(s) 426
BstSCI CCNGG 5 cut(s) 144, 430, 487, 647, 686
BstV1I GCAGC 1 cut(s) 827
BsuI GTATCC 1 cut(s) 327
BsuRI GGCC 2 cut(s) 221, 252
BtsCI GGATG 1 cut(s) 600
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 279
CciI TCATGA 1 cut(s) 694
CfoI GCGC 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 739
Cfr13I GGNCC 4 cut(s) 219, 250, 395, 485
CsiI ACCWGGT 1 cut(s) 430
Csp6I GTAC 4 cut(s) 4, 288, 374, 758
CspAI ACCGGT 1 cut(s) 739
CviAII CATG 4 cut(s) 274, 347, 509, 695
CviQI GTAC 4 cut(s) 4, 288, 374, 758
DdeI CTNAG 1 cut(s) 548
DpnI GATC 2 cut(s) 311, 546
DpnII GATC 2 cut(s) 309, 544
Eco24I GRGCYC 1 cut(s) 694
Eco47I GGWCC 2 cut(s) 395, 485
Eco72I CACGTG 1 cut(s) 573
Eco91I GGTNACC 1 cut(s) 426
EcoO65I GGTNACC 1 cut(s) 426
EcoRII CCWGG 3 cut(s) 430, 647, 686
EcoT38I GRGCYC 1 cut(s) 694
FaeI CATG 4 cut(s) 277, 350, 512, 698
FatI CATG 4 cut(s) 273, 346, 508, 694
FauI CCCGC 1 cut(s) 645
FauNDI CATATG 2 cut(s) 361, 422
Fnu4HI GCNGC 1 cut(s) 816
FokI GGATG 1 cut(s) 607
FriOI GRGCYC 1 cut(s) 694
Fsp4HI GCNGC 1 cut(s) 816
FspBI CTAG 1 cut(s) 521
GlaI GCGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 816
HaeIII GGCC 2 cut(s) 221, 252
HapII CCGG 4 cut(s) 146, 293, 488, 740
HhaI GCGC 1 cut(s) 34
Hin1II CATG 4 cut(s) 277, 350, 512, 698
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HinfI GANTC 2 cut(s) 87, 721
HpaII CCGG 4 cut(s) 146, 293, 488, 740
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 1 cut(s) 527
Hpy188III TCNNGA 4 cut(s) 293, 307, 695, 823
Hpy8I GTNNAC 1 cut(s) 527
HpyCH4IV ACGT 2 cut(s) 56, 572
HpyCH4V TGCA 3 cut(s) 359, 570, 815
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 116, 407, 567
HpyF3I CTNAG 1 cut(s) 548
HpySE526I ACGT 2 cut(s) 56, 572
Hsp92II CATG 4 cut(s) 277, 350, 512, 698
HspAI GCGC 1 cut(s) 32
Kpn2I TCCGGA 1 cut(s) 292
Kzo9I GATC 2 cut(s) 309, 544
LmnI GCTCC 1 cut(s) 116
Lsp1109I GCAGC 1 cut(s) 827
LweI GCATC 1 cut(s) 557
MabI ACCWGGT 1 cut(s) 430
MaeI CTAG 1 cut(s) 521
MaeII ACGT 2 cut(s) 56, 572
MaeIII GTNAC 3 cut(s) 52, 426, 742
MalI GATC 2 cut(s) 311, 546
MboI GATC 2 cut(s) 309, 544
MboII GAAGA 2 cut(s) 170, 375
MhlI GDGCHC 1 cut(s) 694
MluCI AATT 4 cut(s) 463, 642, 668, 715
MmeI TCCRAC 1 cut(s) 754
MnlI CCTC 1 cut(s) 841
MroI TCCGGA 1 cut(s) 292
MseI TTAA 6 cut(s) 212, 440, 450, 476, 641, 853
MslI CAYNNNNRTG 2 cut(s) 267, 534
MspI CCGG 4 cut(s) 146, 293, 488, 740
MspR9I CCNGG 5 cut(s) 146, 432, 489, 649, 688
MvaI CCWGG 3 cut(s) 432, 649, 688
MwoI GCNNNNNNNGC 4 cut(s) 29, 116, 407, 567
NciI CCSGG 2 cut(s) 146, 489
NdeI CATATG 2 cut(s) 361, 422
NdeII GATC 2 cut(s) 309, 544
NlaIII CATG 4 cut(s) 277, 350, 512, 698
NlaIV GGNNCC 1 cut(s) 239
NmuCI GTSAC 1 cut(s) 742
PagI TCATGA 1 cut(s) 694
PcsI WCGNNNNNNNCGW 1 cut(s) 587
PfeI GAWTC 2 cut(s) 87, 721
PflMI CCANNNNNTGG 1 cut(s) 247
PinAI ACCGGT 1 cut(s) 739
PkrI GCNGC 1 cut(s) 817
PmaCI CACGTG 1 cut(s) 573
PmlI CACGTG 1 cut(s) 573
Ppu21I YACGTR 1 cut(s) 573
Psp6I CCWGG 3 cut(s) 430, 647, 686
PspCI CACGTG 1 cut(s) 573
PspEI GGTNACC 1 cut(s) 426
PspGI CCWGG 3 cut(s) 430, 647, 686
PspN4I GGNNCC 1 cut(s) 239
PspPI GGNCC 4 cut(s) 219, 250, 395, 485
RsaI GTAC 4 cut(s) 5, 289, 375, 759
RsaNI GTAC 4 cut(s) 4, 288, 374, 758
RseI CAYNNNNRTG 2 cut(s) 267, 534
SaqAI TTAA 6 cut(s) 212, 440, 450, 476, 641, 853
SatI GCNGC 1 cut(s) 816
Sau3AI GATC 2 cut(s) 309, 544
Sau96I GGNCC 4 cut(s) 219, 250, 395, 485
ScrFI CCNGG 5 cut(s) 146, 432, 489, 649, 688
SduI GDGCHC 1 cut(s) 694
SexAI ACCWGGT 1 cut(s) 430
SfaNI GCATC 1 cut(s) 557
SinI GGWCC 2 cut(s) 395, 485
SmiMI CAYNNNNRTG 2 cut(s) 267, 534
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
Sse9I AATT 4 cut(s) 463, 642, 668, 715
SsiI CCGC 1 cut(s) 652
SspMI CTAG 1 cut(s) 521
StyD4I CCNGG 5 cut(s) 144, 430, 487, 647, 686
TaiI ACGT 2 cut(s) 59, 575
TaqI TCGA 2 cut(s) 312, 369
TaqII GACCGA 1 cut(s) 571
TasI AATT 4 cut(s) 463, 642, 668, 715
TatI WGTACW 3 cut(s) 3, 373, 757
TfiI GAWTC 2 cut(s) 87, 721
Tru1I TTAA 6 cut(s) 212, 440, 450, 476, 641, 853
Tru9I TTAA 6 cut(s) 212, 440, 450, 476, 641, 853
TseFI GTSAC 1 cut(s) 742
TseI GCWGC 1 cut(s) 815
Tsp45I GTSAC 1 cut(s) 742
TspDTI ATGAA 6 cut(s) 16, 79, 171, 251, 494, 711
TspGWI ACGGA 1 cut(s) 129
Van91I CCANNNNNTGG 1 cut(s) 247
VpaK11BI GGWCC 2 cut(s) 395, 485
XspI CTAG 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.