RLG00000000343

PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008317
Physical Location & Seq
Reverse (-)
663364 .. 664701
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000343

Sequence Viewer

Length: 1338 bp
ATGTATAGAACGAATTTCGGGATTGGGCACAGTATAAAAAATCTTTTAGAAGCGCATATTCCTCCGGGGGGACGATTAGGGCGTGGGCATAAGGGTCTTTATGACACAATCAACAATTCGATTCATTTTCAATTAGGCCTTGCTCTAGCCTCTTTGGGGGTTATTACGTCCTTGGTCGCTCAACACATGTACTCTTTACCTGCTTATGCGTTCATAGCGCAAGACTTTACTACTCAAGCTGCGTTATATACTCATCACCAATACATCGCAGGATTCATTATGACAGGGGCTTTTGCTCACGGAGCTATATTTTTTATTAGAGATTACAACCCGGAACAAAATGAGGATAATGTATTGGCAAGAATGTTAGACCACAAAGAAGCTATCATATCCCATTTAAGTTGGGCCAGTCTCTTTTTAGGGTTCCATACTTTGGGCCTTTATGTTCATAATGATGTCATGCTTGCTTTTGGTACTCCGGAGAAACAAATCTTGATCGAACCTATATTTGCTCAATGGATACAATCTGCTCATGGTAAAACTGCATATGGGTTCGATGTACTTTTATCTTCAACAAATGGTCCAGCGTTCAATGCGGGTCGAAGCATATGGTTACCTGGTTGGTTAAATGCTGTTAATGAGAATAGTAATTCACTATTCTTAACAATAGGACCGGGAGACTTCTTGGTTCATCATGCTATTGCTCTAGGTTTACATACAACTACATTGATCTTAGTAAAGGGTGCTTTAGATGCACGTGGTTCCAAGTTAATGCCAGATAAAAAAGATTTTGGTTATAGTTTTCCCTGCGATGGTCCGGGACGGGGCGGTACTTGTGATATTTCGGCTTGGGACGCATTTTATTTGGCAGTTTTCTGGATGTTAAATACCATTGGATGGGTTACTTTTTATTGGCATTGGAAGCACATCACATTATGGCAGGGTAACGTTTCACAGTTTAATGAGTCTTCCACTTATTTGATGGGATGGTTAAGAGATTATCTATGGTTAAACTCTTCCCAACTTATTAATGGATATAACCCTTTTGGAATGAATAGTTTATCGGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTATGTTCTTAATTTCCTGGCGGGGGTATTGGCAAGAATTGATTGAAACTTTAGCCTGGGCTCATGAACGCACACCTTTAGCTAATTTGATTCGATGGAGAGATAAACCGGTCGCTCTTTCTATTGTACAAGCGAGATTAGTTGGATTAGCCCACTTTTCTGTCGGTTATATATTTACTTATGCAGCTTTCTTGATTGCCTCTACATCGGGCAAGTTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
PsaA_PsaB

Protein Analysis

446

Amino Acids

49.98

Weight (kDa)

7.08

Isoelectric Point (pI)

26.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsaA_PsaB PF00223 1 - 438 1.4e-245 Photosystem I psaA/psaB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 208
AccB7I CCANNNNNTGG 2 cut(s) 433, 897
AccIII TCCGGA 1 cut(s) 478
AciI CCGC 3 cut(s) 596, 828, 1135
AclI AACGTT 1 cut(s) 948
AcsI RAATTY 1 cut(s) 13
AcvI CACGTG 1 cut(s) 758
AfaI GTAC 5 cut(s) 191, 475, 561, 832, 1242
AfiI CCNNNNNNNGG 7 cut(s) 68, 156, 433, 812, 824, 897, 1137
AflIII ACRYGT 1 cut(s) 186
AgeI ACCGGT 1 cut(s) 1222
AgsI TTSAA 4 cut(s) 131, 573, 592, 1160
AjnI CCWGG 3 cut(s) 616, 1130, 1169
AluBI AGCT 5 cut(s) 239, 305, 383, 1196, 1301
AluI AGCT 5 cut(s) 239, 305, 383, 1196, 1301
Alw26I GTCTC 2 cut(s) 416, 672
Aor13HI TCCGGA 1 cut(s) 478
AoxI GGCC 3 cut(s) 136, 405, 436
ApeKI GCWGC 2 cut(s) 239, 1298
ApoI RAATTY 1 cut(s) 13
ArsI GACNNNNNNTTYG 2 cut(s) 1083, 1115
AseI ATTAAT 1 cut(s) 1029
AsiGI ACCGGT 1 cut(s) 1222
AspLEI GCGC 2 cut(s) 55, 220
AspS9I GGNCC 5 cut(s) 405, 436, 581, 671, 815
AsuC2I CCSGG 4 cut(s) 66, 332, 675, 819
AsuHPI GGTGA 1 cut(s) 248
AvaII GGWCC 3 cut(s) 581, 671, 815
BaeGI GKGCMC 1 cut(s) 30
BanII GRGCYC 1 cut(s) 1177
BbrPI CACGTG 1 cut(s) 758
BbsI GAAGAC 1 cut(s) 960
BbvI GCAGC 2 cut(s) 226, 1310
BccI CCATC 5 cut(s) 806, 891, 976, 981, 1203
BciT130I CCWGG 3 cut(s) 618, 1132, 1171
BciVI GTATCC 1 cut(s) 513
BcnI CCSGG 4 cut(s) 66, 332, 675, 819
BcoDI GTCTC 2 cut(s) 416, 672
BfaI CTAG 2 cut(s) 146, 707
BfuAI ACCTGC 1 cut(s) 208
BfuI GTATCC 1 cut(s) 513
BisI GCNGC 2 cut(s) 240, 1299
BlsI GCNGC 2 cut(s) 241, 1300
Bme1390I CCNGG 7 cut(s) 66, 332, 618, 675, 819, 1132, 1171
Bme18I GGWCC 3 cut(s) 581, 671, 815
BmgT120I GGNCC 5 cut(s) 405, 436, 581, 671, 815
BmiI GGNNCC 2 cut(s) 425, 763
BmrFI CCNGG 7 cut(s) 66, 332, 618, 675, 819, 1132, 1171
BmsI GCATC 1 cut(s) 742
BpiI GAAGAC 1 cut(s) 960
BpuEI CTTGAG 1 cut(s) 219
BpuMI CCSGG 4 cut(s) 66, 332, 675, 819
BsaAI YACGTR 1 cut(s) 758
BsaJI CCNNGG 3 cut(s) 65, 171, 1170
BsaWI WCCGGW 2 cut(s) 478, 1222
Bsc4I CCNNNNNNNGG 7 cut(s) 68, 156, 433, 812, 824, 897, 1137
Bse118I RCCGGY 1 cut(s) 1222
Bse1I ACTGG 2 cut(s) 408, 1114
BseAI TCCGGA 1 cut(s) 478
BseBI CCWGG 3 cut(s) 618, 1132, 1171
BseDI CCNNGG 3 cut(s) 65, 171, 1170
BseGI GGATG 4 cut(s) 885, 902, 992, 1083
BseLI CCNNNNNNNGG 7 cut(s) 68, 156, 433, 812, 824, 897, 1137
BseNI ACTGG 2 cut(s) 408, 1114
BseSI GKGCMC 1 cut(s) 30
BseXI GCAGC 2 cut(s) 226, 1310
Bsh1285I CGRYCG 1 cut(s) 1227
BshFI GGCC 3 cut(s) 138, 407, 438
BshTI ACCGGT 1 cut(s) 1222
BsiEI CGRYCG 1 cut(s) 1227
BsiSI CCGG 6 cut(s) 65, 332, 479, 674, 818, 1223
BslFI GGGAC 3 cut(s) 84, 834, 866
BslI CCNNNNNNNGG 7 cut(s) 68, 156, 433, 812, 824, 897, 1137
BsmAI GTCTC 2 cut(s) 416, 672
BsmFI GGGAC 3 cut(s) 84, 834, 866
BsnI GGCC 3 cut(s) 138, 407, 438
Bsp1286I GDGCHC 2 cut(s) 30, 1177
Bsp13I TCCGGA 1 cut(s) 478
Bsp1407I TGTACA 1 cut(s) 1240
Bsp143I GATC 2 cut(s) 495, 729
BspACI CCGC 3 cut(s) 596, 828, 1135
BspANI GGCC 3 cut(s) 138, 407, 438
BspEI TCCGGA 1 cut(s) 478
BspHI TCATGA 1 cut(s) 1177
BspLI GGNNCC 2 cut(s) 425, 763
BspMI ACCTGC 1 cut(s) 208
BsrFI RCCGGY 1 cut(s) 1222
BsrGI TGTACA 1 cut(s) 1240
BsrI ACTGG 2 cut(s) 408, 1114
BssAI RCCGGY 1 cut(s) 1222
BssECI CCNNGG 3 cut(s) 65, 171, 1170
BssMI GATC 2 cut(s) 495, 729
BssT1I CCWWGG 1 cut(s) 171
Bst2UI CCWGG 3 cut(s) 618, 1132, 1171
Bst4CI ACNGT 2 cut(s) 32, 957
Bst6I CTCTTC 1 cut(s) 1021
BstAUI TGTACA 1 cut(s) 1240
BstBAI YACGTR 1 cut(s) 758
BstC8I GCNNGC 1 cut(s) 465
BstDEI CTNAG 1 cut(s) 733
BstEII GGTNACC 1 cut(s) 612
BstF5I GGATG 4 cut(s) 885, 902, 992, 1083
BstHHI GCGC 2 cut(s) 55, 220
BstKTI GATC 2 cut(s) 498, 732
BstMAI GTCTC 2 cut(s) 416, 672
BstMBI GATC 2 cut(s) 495, 729
BstMCI CGRYCG 1 cut(s) 1227
BstMWI GCNNNNNNNGC 6 cut(s) 215, 302, 593, 752, 854, 922
BstNI CCWGG 3 cut(s) 618, 1132, 1171
BstNSI RCATGY 1 cut(s) 190
BstPI GGTNACC 1 cut(s) 612
BstSCI CCNGG 7 cut(s) 64, 330, 616, 673, 817, 1130, 1169
BstSLI GKGCMC 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 226, 1310
BstV2I GAAGAC 1 cut(s) 960
BsuI GTATCC 1 cut(s) 513
BsuRI GGCC 3 cut(s) 138, 407, 438
BtgZI GCGATG 2 cut(s) 250, 825
BtsCI GGATG 4 cut(s) 885, 902, 992, 1083
BveI ACCTGC 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 465
CciI TCATGA 1 cut(s) 1177
CfoI GCGC 2 cut(s) 55, 220
Cfr10I RCCGGY 1 cut(s) 1222
Cfr13I GGNCC 5 cut(s) 405, 436, 581, 671, 815
CseI GACGC 1 cut(s) 863
CsiI ACCWGGT 1 cut(s) 616
Csp6I GTAC 5 cut(s) 190, 474, 560, 831, 1241
CspAI ACCGGT 1 cut(s) 1222
CviAII CATG 5 cut(s) 187, 460, 533, 695, 1178
CviQI GTAC 5 cut(s) 190, 474, 560, 831, 1241
DdeI CTNAG 1 cut(s) 733
DpnI GATC 2 cut(s) 497, 731
DpnII GATC 2 cut(s) 495, 729
Eam1104I CTCTTC 1 cut(s) 1021
EarI CTCTTC 1 cut(s) 1021
Eco130I CCWWGG 1 cut(s) 171
Eco147I AGGCCT 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 1177
Eco47I GGWCC 3 cut(s) 581, 671, 815
Eco72I CACGTG 1 cut(s) 758
Eco91I GGTNACC 1 cut(s) 612
EcoO65I GGTNACC 1 cut(s) 612
EcoRII CCWGG 3 cut(s) 616, 1130, 1169
EcoT14I CCWWGG 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 1177
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 5 cut(s) 190, 463, 536, 698, 1181
FaqI GGGAC 3 cut(s) 84, 834, 866
FatI CATG 5 cut(s) 186, 459, 532, 694, 1177
FauI CCCGC 2 cut(s) 589, 1128
FauNDI CATATG 2 cut(s) 547, 608
Fnu4HI GCNGC 2 cut(s) 240, 1299
FokI GGATG 4 cut(s) 892, 909, 999, 1090
FriOI GRGCYC 1 cut(s) 1177
Fsp4HI GCNGC 2 cut(s) 240, 1299
FspBI CTAG 2 cut(s) 146, 707
GlaI GCGC 2 cut(s) 54, 219
GluI GCNGC 2 cut(s) 240, 1299
HaeIII GGCC 3 cut(s) 138, 407, 438
HapII CCGG 6 cut(s) 65, 332, 479, 674, 818, 1223
HgaI GACGC 1 cut(s) 863
HhaI GCGC 2 cut(s) 55, 220
Hin1II CATG 5 cut(s) 190, 463, 536, 698, 1181
Hin6I GCGC 2 cut(s) 53, 218
HinP1I GCGC 2 cut(s) 53, 218
HinfI GANTC 4 cut(s) 121, 273, 965, 1204
HpaII CCGG 6 cut(s) 65, 332, 479, 674, 818, 1223
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 1 cut(s) 713
Hpy188III TCNNGA 6 cut(s) 19, 479, 493, 877, 1178, 1306
Hpy8I GTNNAC 1 cut(s) 713
HpyCH4III ACNGT 2 cut(s) 32, 957
HpyCH4IV ACGT 3 cut(s) 167, 757, 948
HpyCH4V TGCA 3 cut(s) 545, 755, 1298
HpyF10VI GCNNNNNNNGC 6 cut(s) 215, 302, 593, 752, 854, 922
HpyF3I CTNAG 1 cut(s) 733
HpySE526I ACGT 3 cut(s) 167, 757, 948
Hsp92II CATG 5 cut(s) 190, 463, 536, 698, 1181
HspAI GCGC 2 cut(s) 53, 218
Kpn2I TCCGGA 1 cut(s) 478
Kzo9I GATC 2 cut(s) 495, 729
LmnI GCTCC 1 cut(s) 302
Lsp1109I GCAGC 2 cut(s) 226, 1310
LweI GCATC 1 cut(s) 742
MabI ACCWGGT 1 cut(s) 616
MaeI CTAG 2 cut(s) 146, 707
MaeII ACGT 3 cut(s) 167, 757, 948
MaeIII GTNAC 3 cut(s) 612, 901, 944
MalI GATC 2 cut(s) 497, 731
MboI GATC 2 cut(s) 495, 729
MboII GAAGA 3 cut(s) 561, 960, 1008
MhlI GDGCHC 2 cut(s) 30, 1177
MluCI AATT 7 cut(s) 13, 115, 131, 649, 1125, 1151, 1198
MlyI GAGTC 1 cut(s) 974
MmeI TCCRAC 1 cut(s) 1237
MnlI CCTC 4 cut(s) 72, 160, 337, 1324
MroI TCCGGA 1 cut(s) 478
MslI CAYNNNNRTG 1 cut(s) 453
MspI CCGG 6 cut(s) 65, 332, 479, 674, 818, 1223
MspR9I CCNGG 7 cut(s) 66, 332, 618, 675, 819, 1132, 1171
MvaI CCWGG 3 cut(s) 618, 1132, 1171
MwoI GCNNNNNNNGC 6 cut(s) 215, 302, 593, 752, 854, 922
NciI CCSGG 4 cut(s) 66, 332, 675, 819
NdeI CATATG 2 cut(s) 547, 608
NdeII GATC 2 cut(s) 495, 729
NlaIII CATG 5 cut(s) 190, 463, 536, 698, 1181
NlaIV GGNNCC 2 cut(s) 425, 763
NspI RCATGY 1 cut(s) 190
PagI TCATGA 1 cut(s) 1177
PceI AGGCCT 1 cut(s) 138
PciI ACATGT 1 cut(s) 186
PcsI WCGNNNNNNNCGW 2 cut(s) 79, 1070
PfeI GAWTC 3 cut(s) 121, 273, 1204
PflMI CCANNNNNTGG 2 cut(s) 433, 897
PfoI TCCNGGA 1 cut(s) 817
PinAI ACCGGT 1 cut(s) 1222
PkrI GCNGC 2 cut(s) 241, 1300
PleI GAGTC 1 cut(s) 973
PmaCI CACGTG 1 cut(s) 758
PmlI CACGTG 1 cut(s) 758
PpsI GAGTC 1 cut(s) 973
Ppu21I YACGTR 1 cut(s) 758
PscI ACATGT 1 cut(s) 186
PshBI ATTAAT 1 cut(s) 1029
Psp1406I AACGTT 1 cut(s) 948
Psp6I CCWGG 3 cut(s) 616, 1130, 1169
PspCI CACGTG 1 cut(s) 758
PspEI GGTNACC 1 cut(s) 612
PspGI CCWGG 3 cut(s) 616, 1130, 1169
PspN4I GGNNCC 2 cut(s) 425, 763
PspPI GGNCC 5 cut(s) 405, 436, 581, 671, 815
RsaI GTAC 5 cut(s) 191, 475, 561, 832, 1242
RsaNI GTAC 5 cut(s) 190, 474, 560, 831, 1241
RseI CAYNNNNRTG 1 cut(s) 453
SatI GCNGC 2 cut(s) 240, 1299
Sau3AI GATC 2 cut(s) 495, 729
Sau96I GGNCC 5 cut(s) 405, 436, 581, 671, 815
SchI GAGTC 1 cut(s) 974
ScrFI CCNGG 7 cut(s) 66, 332, 618, 675, 819, 1132, 1171
SduI GDGCHC 2 cut(s) 30, 1177
SexAI ACCWGGT 1 cut(s) 616
SfaNI GCATC 1 cut(s) 742
SinI GGWCC 3 cut(s) 581, 671, 815
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 7 cut(s) 13, 115, 131, 649, 1125, 1151, 1198
SseBI AGGCCT 1 cut(s) 138
SsiI CCGC 3 cut(s) 596, 828, 1135
SspMI CTAG 2 cut(s) 146, 707
StuI AGGCCT 1 cut(s) 138
StyD4I CCNGG 7 cut(s) 64, 330, 616, 673, 817, 1130, 1169
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 2 cut(s) 32, 957
TaiI ACGT 3 cut(s) 170, 760, 951
TaqI TCGA 5 cut(s) 119, 498, 555, 601, 1207
TaqII GACCGA 1 cut(s) 1054
TasI AATT 7 cut(s) 13, 115, 131, 649, 1125, 1151, 1198
TatI WGTACW 3 cut(s) 189, 559, 1240
TfiI GAWTC 3 cut(s) 121, 273, 1204
TseI GCWGC 2 cut(s) 239, 1298
TspDTI ATGAA 7 cut(s) 113, 202, 265, 437, 680, 1067, 1194
TspGWI ACGGA 1 cut(s) 315
Van91I CCANNNNNTGG 2 cut(s) 433, 897
VpaK11BI GGWCC 3 cut(s) 581, 671, 815
VspI ATTAAT 1 cut(s) 1029
XapI RAATTY 1 cut(s) 13
XceI RCATGY 1 cut(s) 190
XcmI CCANNNNNNNNNTGG 2 cut(s) 979, 1028
XspI CTAG 2 cut(s) 146, 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.