RchiOBHm_Chr3g0491961

Aldehyde dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0018897
Physical Location & Seq
Reverse (-)
38732074 .. 38733002
929 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 561 bp
ATGTCTTGGTTAACCATATACCAAAGCTTTTCATTCAATTTATATACGAAAGTTTTTGCTTCATTAATAGGTACCGGCGGTGCCCTCTTCAATAATTCAGCGAGACGGAGGGTCAGCTCCTGGACCAGCGAGTGCAAGATTTGTTTTGTTAGGTCATATTTCTGCTCGTTTTGTTTCGTTTTGGTTCTGCTTCATGCTACACGAAACCAAGCAAGACCAAGTCTCTTGACAAAGAAACAGAGATCGATAATGGGTGGCCAAAGTAGTGGAAGCTCTGCATGTTCCGAGGAGTCTTTTGTGAAGATGCCAACGATAAAGTTCACCAAGCTCTTCATCAATGGAGAATTCATCGATTCCGTTTCTGGAAAAACATTCGAGACGATAGATCCAAGAACAGGGGAGGTGATAACCAGAGTGGCAGAAGGAGATAAGGAAGACGTGGATTTGGCCGTGAAAGCTGCACGCGCCGCCTTTGACCATGGCCCCTGGCCTCGCTTACCCGGCGCTGTAAATATATATCTTACTCCACTTTGTTCTTCGGTGTTACTGTTCCGTCCTTAA

Protein Analysis

186

Amino Acids

20.65

Weight (kDa)

9.38

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 117 - 167 7.9e-08 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018897)

Species Orthologous Gene IDs
malus_domestica MD02G1049000.v1.1
pyrus_communis pycom02g04110 pycom02g04140
rosa_chinensis RchiOBHm_Chr3g0491961
rosa_multiflora Rmu_co8011570.1_g000001 Rmu_sc0004195.1_g000001
rosa_samantha Rh2AG056100 Rh2BG054700 Rh2CG057000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 71
AccB1I GGYRCC 2 cut(s) 71, 80
AccII CGCG 1 cut(s) 465
AciI CCGC 2 cut(s) 78, 468
AclWI GGATC 1 cut(s) 380
AcoI YGGCCR 2 cut(s) 256, 447
AcsI RAATTY 1 cut(s) 344
AfaI GTAC 1 cut(s) 73
AfiI CCNNNNNNNGG 1 cut(s) 395
AgsI TTSAA 2 cut(s) 37, 91
AhdI GACNNNNNGTC 1 cut(s) 110
AjiI CACGTC 1 cut(s) 439
AjnI CCWGG 2 cut(s) 119, 485
AluBI AGCT 5 cut(s) 27, 117, 273, 328, 458
AluI AGCT 5 cut(s) 27, 117, 273, 328, 458
Alw26I GTCTC 3 cut(s) 97, 227, 371
AlwI GGATC 1 cut(s) 380
AlwNI CAGNNNCTG 1 cut(s) 120
AoxI GGCC 4 cut(s) 256, 447, 481, 488
ApeKI GCWGC 1 cut(s) 458
ApoI RAATTY 1 cut(s) 344
AseI ATTAAT 1 cut(s) 65
Asp718I GGTACC 1 cut(s) 71
AspLEI GCGC 2 cut(s) 467, 506
AspS9I GGNCC 2 cut(s) 123, 482
AsuC2I CCSGG 1 cut(s) 501
AsuHPI GGTGA 2 cut(s) 313, 415
AvaII GGWCC 1 cut(s) 123
BaeGI GKGCMC 1 cut(s) 85
BalI TGGCCA 1 cut(s) 258
BanI GGYRCC 2 cut(s) 71, 80
BbsI GAAGAC 1 cut(s) 441
BbvI GCAGC 1 cut(s) 445
BceAI ACGGC 1 cut(s) 434
BciT130I CCWGG 2 cut(s) 121, 487
BcnI CCSGG 1 cut(s) 501
BcoDI GTCTC 3 cut(s) 97, 227, 371
BfoI RGCGCY 1 cut(s) 507
BisI GCNGC 2 cut(s) 459, 468
BlsI GCNGC 2 cut(s) 460, 469
Bme1390I CCNGG 3 cut(s) 121, 487, 501
Bme18I GGWCC 1 cut(s) 123
BmeRI GACNNNNNGTC 1 cut(s) 110
BmgBI CACGTC 1 cut(s) 439
BmgT120I GGNCC 2 cut(s) 123, 482
BmiI GGNNCC 3 cut(s) 73, 82, 484
BmrFI CCNGG 3 cut(s) 121, 487, 501
BmsI GCATC 1 cut(s) 294
BpiI GAAGAC 1 cut(s) 441
BpuMI CCSGG 1 cut(s) 501
Bsa29I ATCGAT 2 cut(s) 245, 351
BsaJI CCNNGG 3 cut(s) 285, 478, 485
Bsc4I CCNNNNNNNGG 1 cut(s) 395
Bse118I RCCGGY 1 cut(s) 74
BseBI CCWGG 2 cut(s) 121, 487
BseCI ATCGAT 2 cut(s) 245, 351
BseDI CCNNGG 3 cut(s) 285, 478, 485
BseLI CCNNNNNNNGG 1 cut(s) 395
BseRI GAGGAG 1 cut(s) 302
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 1 cut(s) 445
BsgI GTGCAG 1 cut(s) 444
Bsh1236I CGCG 1 cut(s) 465
BshFI GGCC 4 cut(s) 258, 449, 483, 490
BshNI GGYRCC 2 cut(s) 71, 80
BshVI ATCGAT 2 cut(s) 245, 351
BsiSI CCGG 2 cut(s) 75, 501
BslI CCNNNNNNNGG 1 cut(s) 395
BsmAI GTCTC 3 cut(s) 97, 227, 371
BsmBI CGTCTC 2 cut(s) 97, 371
BsnI GGCC 4 cut(s) 258, 449, 483, 490
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 2 cut(s) 242, 385
Bsp19I CCATGG 1 cut(s) 478
BspACI CCGC 2 cut(s) 78, 468
BspANI GGCC 4 cut(s) 258, 449, 483, 490
BspDI ATCGAT 2 cut(s) 245, 351
BspFNI CGCG 1 cut(s) 465
BspLI GGNNCC 3 cut(s) 73, 82, 484
BspPI GGATC 1 cut(s) 380
BspQI GCTCTTC 1 cut(s) 335
BspT107I GGYRCC 2 cut(s) 71, 80
BsrFI RCCGGY 1 cut(s) 74
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 3 cut(s) 285, 478, 485
BssMI GATC 2 cut(s) 242, 385
BssT1I CCWWGG 1 cut(s) 478
Bst2UI CCWGG 2 cut(s) 121, 487
Bst4CI ACNGT 1 cut(s) 549
Bst6I CTCTTC 2 cut(s) 92, 335
BstC8I GCNNGC 1 cut(s) 463
BstDSI CCRYGG 1 cut(s) 478
BstFNI CGCG 1 cut(s) 465
BstH2I RGCGCY 1 cut(s) 507
BstHHI GCGC 2 cut(s) 467, 506
BstKTI GATC 2 cut(s) 245, 388
BstMAI GTCTC 3 cut(s) 97, 227, 371
BstMBI GATC 2 cut(s) 242, 385
BstMWI GCNNNNNNNGC 4 cut(s) 455, 464, 467, 501
BstNI CCWGG 2 cut(s) 121, 487
BstNSI RCATGY 1 cut(s) 282
BstSCI CCNGG 3 cut(s) 119, 485, 499
BstSLI GKGCMC 1 cut(s) 85
BstUI CGCG 1 cut(s) 465
BstV1I GCAGC 1 cut(s) 445
BstV2I GAAGAC 1 cut(s) 441
BstX2I RGATCY 1 cut(s) 385
BstXI CCANNNNNNTGG 1 cut(s) 266
BstYI RGATCY 1 cut(s) 385
Bsu15I ATCGAT 2 cut(s) 245, 351
BsuRI GGCC 4 cut(s) 258, 449, 483, 490
BsuTUI ATCGAT 2 cut(s) 245, 351
BtgI CCRYGG 1 cut(s) 478
BtrI CACGTC 1 cut(s) 439
Cac8I GCNNGC 1 cut(s) 463
CaiI CAGNNNCTG 1 cut(s) 120
CfoI GCGC 2 cut(s) 467, 506
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 2 cut(s) 123, 482
ClaI ATCGAT 2 cut(s) 245, 351
Csp6I GTAC 1 cut(s) 72
CviAII CATG 3 cut(s) 194, 279, 479
CviJI RGCY 9 cut(s) 27, 117, 258, 273, 328, 449, 458, 483, 490
CviKI_1 RGCY 9 cut(s) 27, 117, 258, 273, 328, 449, 458, 483, 490
CviQI GTAC 1 cut(s) 72
DpnI GATC 2 cut(s) 244, 387
DpnII GATC 2 cut(s) 242, 385
DriI GACNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 2 cut(s) 256, 447
Eam1104I CTCTTC 2 cut(s) 92, 335
Eam1105I GACNNNNNGTC 1 cut(s) 110
EarI CTCTTC 2 cut(s) 92, 335
Eco130I CCWWGG 1 cut(s) 478
Eco47I GGWCC 1 cut(s) 123
EcoRI GAATTC 1 cut(s) 344
EcoRII CCWGG 2 cut(s) 119, 485
EcoT14I CCWWGG 1 cut(s) 478
ErhI CCWWGG 1 cut(s) 478
Esp3I CGTCTC 2 cut(s) 97, 371
FaeI CATG 3 cut(s) 197, 282, 482
FatI CATG 3 cut(s) 193, 278, 478
Fnu4HI GCNGC 2 cut(s) 459, 468
Fsp4HI GCNGC 2 cut(s) 459, 468
GlaI GCGC 2 cut(s) 466, 505
GluI GCNGC 2 cut(s) 459, 468
HaeII RGCGCY 1 cut(s) 507
HaeIII GGCC 4 cut(s) 258, 449, 483, 490
HapII CCGG 2 cut(s) 75, 501
HhaI GCGC 2 cut(s) 467, 506
Hin1II CATG 3 cut(s) 197, 282, 482
Hin6I GCGC 2 cut(s) 465, 504
HinP1I GCGC 2 cut(s) 465, 504
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 25
HinfI GANTC 2 cut(s) 290, 353
HpaI GTTAAC 1 cut(s) 12
HpaII CCGG 2 cut(s) 75, 501
HphI GGTGA 2 cut(s) 313, 415
Hpy166II GTNNAC 2 cut(s) 12, 321
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 3 cut(s) 226, 363, 376
Hpy8I GTNNAC 2 cut(s) 12, 321
HpyAV CCTTC 1 cut(s) 416
HpyCH4III ACNGT 1 cut(s) 549
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 3 cut(s) 135, 278, 461
HpyF10VI GCNNNNNNNGC 4 cut(s) 455, 464, 467, 501
HpySE526I ACGT 1 cut(s) 438
Hsp92II CATG 3 cut(s) 197, 282, 482
HspAI GCGC 2 cut(s) 465, 504
KpnI GGTACC 1 cut(s) 75
KspAI GTTAAC 1 cut(s) 12
Kzo9I GATC 2 cut(s) 242, 385
LguI GCTCTTC 1 cut(s) 335
LmnI GCTCC 1 cut(s) 122
Lsp1109I GCAGC 1 cut(s) 445
LweI GCATC 1 cut(s) 294
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 1 cut(s) 543
MalI GATC 2 cut(s) 244, 387
MboI GATC 2 cut(s) 242, 385
MboII GAAGA 5 cut(s) 79, 313, 322, 446, 528
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 1 cut(s) 85
MlsI TGGCCA 1 cut(s) 258
MluCI AATT 3 cut(s) 37, 94, 344
MluNI TGGCCA 1 cut(s) 258
MlyI GAGTC 1 cut(s) 299
MnlI CCTC 5 cut(s) 95, 102, 280, 394, 501
Mox20I TGGCCA 1 cut(s) 258
MscI TGGCCA 1 cut(s) 258
MseI TTAA 3 cut(s) 11, 65, 559
Msp20I TGGCCA 1 cut(s) 258
MspI CCGG 2 cut(s) 75, 501
MspR9I CCNGG 3 cut(s) 121, 487, 501
MvaI CCWGG 2 cut(s) 121, 487
MvnI CGCG 1 cut(s) 465
MwoI GCNNNNNNNGC 4 cut(s) 455, 464, 467, 501
NciI CCSGG 1 cut(s) 501
NcoI CCATGG 1 cut(s) 478
NdeII GATC 2 cut(s) 242, 385
NlaIII CATG 3 cut(s) 197, 282, 482
NlaIV GGNNCC 3 cut(s) 73, 82, 484
NspI RCATGY 1 cut(s) 282
PciSI GCTCTTC 1 cut(s) 335
PfeI GAWTC 1 cut(s) 353
PflFI GACNNNGTC 1 cut(s) 219
PfoI TCCNGGA 1 cut(s) 119
PkrI GCNGC 2 cut(s) 460, 469
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PshBI ATTAAT 1 cut(s) 65
Psp6I CCWGG 2 cut(s) 119, 485
PspGI CCWGG 2 cut(s) 119, 485
PspN4I GGNNCC 3 cut(s) 73, 82, 484
PspPI GGNCC 2 cut(s) 123, 482
PstNI CAGNNNCTG 1 cut(s) 120
PsuI RGATCY 1 cut(s) 385
PsyI GACNNNGTC 1 cut(s) 219
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
SapI GCTCTTC 1 cut(s) 335
SaqAI TTAA 3 cut(s) 11, 65, 559
SatI GCNGC 2 cut(s) 459, 468
Sau3AI GATC 2 cut(s) 242, 385
Sau96I GGNCC 2 cut(s) 123, 482
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 3 cut(s) 121, 487, 501
SduI GDGCHC 1 cut(s) 85
SetI ASST 9 cut(s) 29, 73, 119, 155, 275, 330, 405, 441, 460
SfaNI GCATC 1 cut(s) 294
SinI GGWCC 1 cut(s) 123
Sse9I AATT 3 cut(s) 37, 94, 344
SsiI CCGC 2 cut(s) 78, 468
StyD4I CCNGG 3 cut(s) 119, 485, 499
StyI CCWWGG 1 cut(s) 478
TaaI ACNGT 1 cut(s) 549
TaiI ACGT 1 cut(s) 441
TaqI TCGA 3 cut(s) 245, 351, 375
TasI AATT 3 cut(s) 37, 94, 344
TauI GCSGC 1 cut(s) 470
TfiI GAWTC 1 cut(s) 353
Tru1I TTAA 3 cut(s) 11, 65, 559
Tru9I TTAA 3 cut(s) 11, 65, 559
TseI GCWGC 1 cut(s) 458
TspDTI ATGAA 5 cut(s) 21, 51, 182, 322, 337
TspGWI ACGGA 3 cut(s) 121, 346, 542
Tth111I GACNNNGTC 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 123
VspI ATTAAT 1 cut(s) 65
XapI RAATTY 1 cut(s) 344
XceI RCATGY 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.