RchiOBHm_Chr2g0088681

NHP2-like protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013069
Physical Location & Seq
Reverse (-)
3144529 .. 3146237
1709 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 387 bp
ATGACCGGAGAAGCAGTCAACCCTAAAGCTTACCCCTTGGCCGATGGTCAGCTCACCATCACCATTCTCGACCTGGTTCAGCAAGCCTTCAACTTCAAGCAGCTCAAAAAGGGCGCCAACGAAGCTACTAAGACCCTGAACAGAGGTATTGCTGAGTTCATTGTGATGGCTGCTGATACCGAGCCGCTTGAGATTCTTCTTCATCTTCCCCTCTTGGCTGAAGATAAGAATGTGCCCTATGTGTTCGTGCCTTCGAAGCAAGCTCTTGGACGAGCCTGTGGTGTCTCAAGACCTGTCATTGCTTGTTCTGTGACAACAAATGAGGGTAGCCAAATGAAAGTCCAAATACAACAGCTCAAGGATGCCATTGAGAAGCTCCTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03040 map03008 map03040
Pfam Domains
Protein Families
Ribosomal_L7Ae

Protein Analysis

128

Amino Acids

13.92

Weight (kDa)

6.57

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L7Ae PF01248 23 - 111 7.7e-27 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12600 AT4G22380 AT5G20160
fragaria_vesca FvH4_1g03460
malus_domestica MD02G1033700.v1.1 MD15G1174500.v1.1
prunus_persica Prupe.5G003200_v2.0.a1 Prupe.7G241400_v2.0.a1
pyrus_communis pycom02g02760 pycom15g15610
rosa_chinensis RchiOBHm_Chr2g0088681
rosa_laevigata RLG00000015975
rosa_multiflora Rmu_sc0006835.1_g000011 Rmu_sc0015442.1_g000014
rosa_roxburghii Rroxscaffold_2G00152410
rosa_rugosa Rorug01G0485800
rosa_samantha Rh2AG041300
rosa_wichuraiana Rw2G003310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 113
AciI CCGC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 39
AcuI CTGAAG 1 cut(s) 240
AcyI GRCGYC 1 cut(s) 114
AgsI TTSAA 2 cut(s) 91, 97
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 7 cut(s) 29, 52, 103, 125, 263, 355, 376
AluI AGCT 7 cut(s) 29, 52, 103, 125, 263, 355, 376
Alw26I GTCTC 1 cut(s) 289
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 2 cut(s) 100, 170
AspLEI GCGC 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 46, 52
AsuII TTCGAA 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 237
BanI GGYRCC 1 cut(s) 113
BbvI GCAGC 2 cut(s) 112, 157
BccI CCATC 3 cut(s) 38, 65, 160
BciT130I CCWGG 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 289
BfoI RGCGCY 1 cut(s) 117
BisI GCNGC 3 cut(s) 101, 171, 185
BlsI GCNGC 3 cut(s) 102, 172, 186
Bme1390I CCNGG 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 1 cut(s) 352
Bpu14I TTCGAA 1 cut(s) 254
BpuEI CTTGAG 3 cut(s) 209, 271, 341
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 5
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bse3DI GCAATG 1 cut(s) 297
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 367
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 144
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 2 cut(s) 112, 157
BshFI GGCC 1 cut(s) 41
BshNI GGYRCC 1 cut(s) 113
BsiSI CCGG 1 cut(s) 6
BsmAI GTCTC 1 cut(s) 289
BsnI GGCC 1 cut(s) 41
Bsp119I TTCGAA 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 237
BspACI CCGC 1 cut(s) 185
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 115
BspT104I TTCGAA 1 cut(s) 254
BspT107I GGYRCC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 297
BssECI CCNNGG 1 cut(s) 36
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 74
BstACI GRCGYC 1 cut(s) 114
BstBI TTCGAA 1 cut(s) 254
BstC8I GCNNGC 2 cut(s) 84, 261
BstDEI CTNAG 2 cut(s) 129, 153
BstF5I GGATG 1 cut(s) 367
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstMAI GTCTC 1 cut(s) 289
BstMWI GCNNNNNNNGC 2 cut(s) 122, 256
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstSLI GKGCMC 1 cut(s) 237
BstV1I GCAGC 2 cut(s) 112, 157
BsuRI GGCC 1 cut(s) 41
BtsCI GGATG 1 cut(s) 367
Cac8I GCNNGC 2 cut(s) 84, 261
CfoI GCGC 1 cut(s) 116
CsiI ACCWGGT 1 cut(s) 72
DdeI CTNAG 2 cut(s) 129, 153
DinI GGCGCC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 72
EcoT14I CCWWGG 1 cut(s) 36
EgeI GGCGCC 1 cut(s) 115
EheI GGCGCC 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 36
FaiI YATR 1 cut(s) 240
Fnu4HI GCNGC 3 cut(s) 101, 171, 185
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 3 cut(s) 101, 171, 185
GlaI GCGC 1 cut(s) 115
GluI GCNGC 3 cut(s) 101, 171, 185
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 1 cut(s) 41
HapII CCGG 1 cut(s) 6
HhaI GCGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 114
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 1 cut(s) 193
HpaII CCGG 1 cut(s) 6
HphI GGTGA 2 cut(s) 46, 52
Hpy166II GTNNAC 1 cut(s) 19
Hpy188III TCNNGA 2 cut(s) 68, 288
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 2 cut(s) 97, 261
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 256
HpyF3I CTNAG 2 cut(s) 129, 153
Hsp92I GRCGYC 1 cut(s) 114
HspAI GCGC 1 cut(s) 114
KasI GGCGCC 1 cut(s) 113
LmnI GCTCC 1 cut(s) 381
LpnPI CCDG 6 cut(s) 19, 59, 86, 149, 289, 306
Lsp1109I GCAGC 2 cut(s) 112, 157
LweI GCATC 1 cut(s) 352
MabI ACCWGGT 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 310
MboII GAAGA 4 cut(s) 188, 191, 197, 233
MhlI GDGCHC 1 cut(s) 237
Mly113I GGCGCC 1 cut(s) 114
MnlI CCTC 3 cut(s) 137, 221, 316
MslI CAYNNNNRTG 1 cut(s) 164
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
MwoI GCNNNNNNNGC 2 cut(s) 122, 256
NarI GGCGCC 1 cut(s) 114
NlaIV GGNNCC 1 cut(s) 115
NmuCI GTSAC 1 cut(s) 310
NspV TTCGAA 1 cut(s) 254
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 3 cut(s) 102, 172, 186
PluTI GGCGCC 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 164
SatI GCNGC 3 cut(s) 101, 171, 185
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 237
SexAI ACCWGGT 1 cut(s) 72
SfaNI GCATC 1 cut(s) 352
SfoI GGCGCC 1 cut(s) 115
SfuI TTCGAA 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 3 cut(s) 188, 286, 356
SmoI CTYRAG 3 cut(s) 188, 286, 356
SsiI CCGC 1 cut(s) 185
SspDI GGCGCC 1 cut(s) 113
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 1 cut(s) 36
TaqI TCGA 2 cut(s) 69, 254
TauI GCSGC 1 cut(s) 187
TfiI GAWTC 1 cut(s) 193
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 2 cut(s) 100, 170
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 3 cut(s) 148, 191, 350
XcmI CCANNNNNNNNNTGG 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.