RchiOBHm_Chr2g0093401

Transmembrane protein 258-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0015445
Physical Location & Seq
Reverse (-)
6669649 .. 6671010
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 231 bp
ATGGCGCCGAAGCCCATCGCCAGTCCCGTGCCGGACGCGTGGTACCCAACCCTAGCGGTCGTCATGCTCTCCCTCGGCCTCCTCTTCACCGCTTCCTTCTTCATCTATGAAGCGACCTCTTCCAGGAAAAGCCGCAGTCTTGCTAAGGAGCTTATTACAGGAACTGTGGCCTCTGTCTTCTTGGGTTTTGGATCCTTGTTCTTGCTGCTTGCTTCGGGAGTTTATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ost5

Protein Analysis

76

Amino Acids

8.09

Weight (kDa)

9.3

Isoelectric Point (pI)

33.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ost5 PF05251 4 - 76 2.3e-27 Oligosaccharyltransferase subunit 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29735 AT4G29735
fragaria_vesca FvH4_1g07510
malus_domestica MD02G1079700.v1.1 MD15G1207400.v1.1
prunus_persica Prupe.7G209400_v2.0.a1
pyrus_communis pycom02g06350
rosa_chinensis RchiOBHm_Chr2g0093401
rosa_multiflora Rmu_sc0005227.1_g000016 Rmu_sc0032382.1_g000002
rosa_rugosa Rorug02G0035100
rosa_samantha Rh2AG081500 Rh2BG082800 Rh2CG084800 Rh2DG080500
rosa_wichuraiana Rw2G006510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 42
AccB1I GGYRCC 2 cut(s) 4, 42
AccII CGCG 1 cut(s) 38
AciI CCGC 3 cut(s) 56, 90, 133
AclWI GGATC 2 cut(s) 186, 199
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 123
AflIII ACRYGT 1 cut(s) 36
AjnI CCWGG 1 cut(s) 122
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
AlwI GGATC 2 cut(s) 186, 199
AlwNI CAGNNNCTG 1 cut(s) 164
AoxI GGCC 2 cut(s) 76, 168
ApeKI GCWGC 1 cut(s) 205
Asp718I GGTACC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 79
BamHI GGATCC 1 cut(s) 191
BanI GGYRCC 2 cut(s) 4, 42
BbsI GAAGAC 1 cut(s) 169
BbvI GCAGC 1 cut(s) 192
BccI CCATC 1 cut(s) 23
BciT130I CCWGG 1 cut(s) 124
BfaI CTAG 1 cut(s) 53
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 2 cut(s) 133, 206
BlsI GCNGC 2 cut(s) 134, 207
Bme1390I CCNGG 1 cut(s) 124
BmiI GGNNCC 3 cut(s) 6, 44, 193
BmrFI CCNGG 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 169
Bpu10I CCTNAGC 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 73
BsaXI ACNNNNNCTCC 1 cut(s) 210
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 21
BseBI CCWGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 38
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 2 cut(s) 78, 170
BshNI GGYRCC 2 cut(s) 4, 42
BsiEI CGRYCG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 9
BsnI GGCC 2 cut(s) 78, 170
Bsp143I GATC 1 cut(s) 191
BspACI CCGC 3 cut(s) 56, 90, 133
BspANI GGCC 2 cut(s) 78, 170
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 3 cut(s) 6, 44, 193
BspPI GGATC 2 cut(s) 186, 199
BspT107I GGYRCC 2 cut(s) 4, 42
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 1 cut(s) 191
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 2 cut(s) 89, 124
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 1 cut(s) 144
BstENI CCTNNNNNAGG 1 cut(s) 121
BstFNI CGCG 1 cut(s) 38
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 194
BstMBI GATC 1 cut(s) 191
BstMCI CGRYCG 1 cut(s) 60
BstNI CCWGG 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 122
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 192
BstV2I GAAGAC 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BsuRI GGCC 2 cut(s) 78, 170
Cac8I GCNNGC 1 cut(s) 210
CaiI CAGNNNCTG 1 cut(s) 164
CfoI GCGC 1 cut(s) 7
CseI GACGC 1 cut(s) 44
Csp6I GTAC 1 cut(s) 43
CviAII CATG 1 cut(s) 64
CviJI RGCY 5 cut(s) 13, 78, 132, 151, 170
CviKI_1 RGCY 5 cut(s) 13, 78, 132, 151, 170
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 144
DinI GGCGCC 1 cut(s) 6
DpnI GATC 1 cut(s) 193
DpnII GATC 1 cut(s) 191
Eam1104I CTCTTC 2 cut(s) 89, 124
EarI CTCTTC 2 cut(s) 89, 124
EcoNI CCTNNNNNAGG 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 122
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 1 cut(s) 67
FaiI YATR 3 cut(s) 65, 108, 225
FaqI GGGAC 1 cut(s) 9
FatI CATG 1 cut(s) 63
Fnu4HI GCNGC 2 cut(s) 133, 206
Fsp4HI GCNGC 2 cut(s) 133, 206
FspBI CTAG 1 cut(s) 53
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 133, 206
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 78, 170
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 44
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 67
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HpaII CCGG 1 cut(s) 32
HphI GGTGA 1 cut(s) 79
Hpy188III TCNNGA 1 cut(s) 216
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 166
HpyF3I CTNAG 1 cut(s) 144
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 67
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
KpnI GGTACC 1 cut(s) 46
Kzo9I GATC 1 cut(s) 191
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 5 cut(s) 34, 45, 109, 136, 144
Lsp1109I GCAGC 1 cut(s) 192
MaeI CTAG 1 cut(s) 53
MalI GATC 1 cut(s) 193
MboI GATC 1 cut(s) 191
MboII GAAGA 4 cut(s) 76, 91, 111, 169
MflI RGATCY 1 cut(s) 191
MluI ACGCGT 1 cut(s) 36
Mly113I GGCGCC 1 cut(s) 5
MnlI CCTC 5 cut(s) 83, 89, 92, 127, 181
MseI TTAA 1 cut(s) 229
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 124
MvnI CGCG 1 cut(s) 38
NarI GGCGCC 1 cut(s) 5
NdeII GATC 1 cut(s) 191
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 3 cut(s) 6, 44, 193
NmeAIII GCCGAG 1 cut(s) 54
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PfoI TCCNGGA 1 cut(s) 122
PkrI GCNGC 2 cut(s) 134, 207
PluTI GGCGCC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 3 cut(s) 6, 44, 193
PstNI CAGNNNCTG 1 cut(s) 164
PsuI RGATCY 1 cut(s) 191
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 229
SatI GCNGC 2 cut(s) 133, 206
Sau3AI GATC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 124
SetI ASST 2 cut(s) 119, 153
SfoI GGCGCC 1 cut(s) 6
SsiI CCGC 3 cut(s) 56, 90, 133
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 122
TaaI ACNGT 1 cut(s) 166
TauI GCSGC 1 cut(s) 135
Tru1I TTAA 1 cut(s) 229
Tru9I TTAA 1 cut(s) 229
TseI GCWGC 1 cut(s) 205
TspDTI ATGAA 2 cut(s) 91, 123
XagI CCTNNNNNAGG 1 cut(s) 121
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.