RchiOBHm_Chr2g0094411
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017476
Physical Location & Seq
Forward (+)
7343228 .. 7344348
1121 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 687 bp
ATGGGAAGAAAACCCTGCTGTAACAAACAAGGGGTAAAAAAGGGAGCATGGTCTGTTGAGGAAGATGAAGTCCTCGTTCACTACATAGAAACACATGGAACAGGCAAATGGAGAGACATTCCTCAGAGAGCTGGGTTAAACCGGTGCGGAAAGAGCTGCAGACTGCGATGGCTGAATTATCTTAGGCCGGATATCAAGAGAGGAAACATTTCTGCCGATGACGATGAACTCATTTTTAGACTACACAATCTTCTTGGAAACAGGTGGACCCTTATAGCCGGAAGATTGCCTGGACGAACAGACAATGAAATAAAGAATCACTGGAATACTAATTTGAGCAAGAGGTCATTAGAGCAAGCTCCACACAATGACATTGAGGCTCATGATCATGATCATCATCATCAGCATGATGAATATCCTAGCAAGAAATTAAAAGAAGCTGAGGATATAATTTACACGGAAGATCAAAACAAGGCCATTCGAACAAAAGCATTTGAGCTCATGAAGGACCTAATTATCCCATCTACTATTGCTCTTGATGATAACAGTACCATAGACAACTCCCATCATCATGAAATTGAAAAGGCAATATCCTCTTCTTCTTCAGTAGTGGCTGATCTTCACCATCAAGAGCTGTCGAACTCATGTGGCGGCGGCGGATGGAGAAGGAGGATTCAGCCCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

228

Amino Acids

26.16

Weight (kDa)

6.97

Isoelectric Point (pI)

56.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 9.6e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 3.3e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.5e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 120 6.4e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017476)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08370 FvH4_1g08370
rosa_chinensis RchiOBHm_Chr2g0094411 RchiOBHm_Chr2g0094451
rosa_laevigata RLG00000016493
rosa_multiflora Rmu_sc0003819.1_g000002 Rmu_sc0009959.1_g000001
rosa_rugosa Rorug02G0044100
rosa_samantha Rh2BG092300 Rh2CG094800 Rh2DG090900 Rh2DG091200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 147, 651, 654, 657
AcuI CTGAAG 1 cut(s) 588
AfaI GTAC 1 cut(s) 550
AgeI ACCGGT 1 cut(s) 141
AgsI TTSAA 1 cut(s) 581
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 6 cut(s) 131, 156, 359, 440, 499, 634
AluI AGCT 6 cut(s) 131, 156, 359, 440, 499, 634
Alw21I GWGCWC 1 cut(s) 501
Alw26I GTCTC 1 cut(s) 108
AoxI GGCC 2 cut(s) 185, 474
ApeKI GCWGC 1 cut(s) 156
AsiGI ACCGGT 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 208
AspS9I GGNCC 2 cut(s) 267, 508
AsuHPI GGTGA 1 cut(s) 614
AsuII TTCGAA 1 cut(s) 481
AvaII GGWCC 2 cut(s) 267, 508
BanII GRGCYC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 501
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 1 cut(s) 143
BccI CCATC 5 cut(s) 162, 529, 573, 633, 654
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 2 cut(s) 385, 391
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 1 cut(s) 420
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 3 cut(s) 157, 652, 655
BlsI GCNGC 3 cut(s) 158, 653, 656
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 2 cut(s) 267, 508
BmgT120I GGNCC 2 cut(s) 267, 508
BmiI GGNNCC 1 cut(s) 269
BmrFI CCNGG 1 cut(s) 291
Bpu10I CCTNAGC 1 cut(s) 441
Bpu14I TTCGAA 1 cut(s) 481
BsaBI GATNNNNATC 3 cut(s) 390, 396, 414
BsaWI WCCGGW 1 cut(s) 141
Bse118I RCCGGY 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 326
Bse8I GATNNNNATC 3 cut(s) 390, 396, 414
BseBI CCWGG 1 cut(s) 291
BseGI GGATG 1 cut(s) 665
BseJI GATNNNNATC 3 cut(s) 390, 396, 414
BseMII CTCAG 2 cut(s) 137, 432
BseNI ACTGG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 143
BseYI CCCAGC 1 cut(s) 131
BshFI GGCC 2 cut(s) 187, 476
BshTI ACCGGT 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 501
BsiSI CCGG 3 cut(s) 142, 188, 279
BsmAI GTCTC 1 cut(s) 108
BsnI GGCC 2 cut(s) 187, 476
Bsp119I TTCGAA 1 cut(s) 481
Bsp1286I GDGCHC 1 cut(s) 501
Bsp143I GATC 4 cut(s) 385, 391, 463, 616
BspACI CCGC 4 cut(s) 147, 651, 654, 657
BspANI GGCC 2 cut(s) 187, 476
BspCNI CTCAG 2 cut(s) 136, 433
BspHI TCATGA 4 cut(s) 382, 388, 501, 571
BspLI GGNNCC 1 cut(s) 269
BspMAI CTGCAG 1 cut(s) 161
BspT104I TTCGAA 1 cut(s) 481
BsrFI RCCGGY 1 cut(s) 141
BsrI ACTGG 1 cut(s) 326
BssAI RCCGGY 1 cut(s) 141
BssMI GATC 4 cut(s) 385, 391, 463, 616
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 548
Bst6I CTCTTC 1 cut(s) 601
BstBI TTCGAA 1 cut(s) 481
BstC8I GCNNGC 1 cut(s) 357
BstDEI CTNAG 3 cut(s) 123, 182, 441
BstF5I GGATG 1 cut(s) 665
BstKTI GATC 4 cut(s) 388, 394, 466, 619
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 4 cut(s) 385, 391, 463, 616
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 143
BsuRI GGCC 2 cut(s) 187, 476
BtgZI GCGATG 1 cut(s) 181
BtsCI GGATG 1 cut(s) 665
BtsIMutI CAGTG 1 cut(s) 319
Cac8I GCNNGC 1 cut(s) 357
CciI TCATGA 4 cut(s) 382, 388, 501, 571
Cfr10I RCCGGY 1 cut(s) 141
Cfr13I GGNCC 2 cut(s) 267, 508
Csp6I GTAC 1 cut(s) 549
CspAI ACCGGT 1 cut(s) 141
CviAII CATG 8 cut(s) 48, 95, 383, 389, 407, 502, 572, 645
CviQI GTAC 1 cut(s) 549
DdeI CTNAG 3 cut(s) 123, 182, 441
DpnI GATC 4 cut(s) 387, 393, 465, 618
DpnII GATC 4 cut(s) 385, 391, 463, 616
Eam1104I CTCTTC 1 cut(s) 601
EarI CTCTTC 1 cut(s) 601
EciI GGCGGA 1 cut(s) 672
Ecl136II GAGCTC 1 cut(s) 499
Eco24I GRGCYC 1 cut(s) 501
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 2 cut(s) 267, 508
Eco53kI GAGCTC 1 cut(s) 499
Eco57I CTGAAG 1 cut(s) 588
EcoICRI GAGCTC 1 cut(s) 499
EcoO109I RGGNCCY 1 cut(s) 508
EcoRII CCWGG 1 cut(s) 289
EcoRV GATATC 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 501
FaeI CATG 8 cut(s) 51, 98, 386, 392, 410, 505, 575, 648
FatI CATG 8 cut(s) 47, 94, 382, 388, 406, 501, 571, 644
FbaI TGATCA 2 cut(s) 385, 391
Fnu4HI GCNGC 3 cut(s) 157, 652, 655
FokI GGATG 1 cut(s) 672
FriOI GRGCYC 1 cut(s) 501
Fsp4HI GCNGC 3 cut(s) 157, 652, 655
FspBI CTAG 1 cut(s) 420
GluI GCNGC 3 cut(s) 157, 652, 655
GsaI CCCAGC 1 cut(s) 135
HaeIII GGCC 2 cut(s) 187, 476
HapII CCGG 3 cut(s) 142, 188, 279
Hin1II CATG 8 cut(s) 51, 98, 386, 392, 410, 505, 575, 648
HinfI GANTC 2 cut(s) 316, 673
HpaII CCGG 3 cut(s) 142, 188, 279
HphI GGTGA 1 cut(s) 614
Hpy166II GTNNAC 2 cut(s) 79, 267
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 8 cut(s) 196, 383, 389, 502, 536, 572, 629, 684
Hpy8I GTNNAC 2 cut(s) 79, 267
HpyAV CCTTC 2 cut(s) 499, 660
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4V TGCA 1 cut(s) 159
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpyF3I CTNAG 3 cut(s) 123, 182, 441
Hsp92II CATG 8 cut(s) 51, 98, 386, 392, 410, 505, 575, 648
Ksp22I TGATCA 2 cut(s) 385, 391
Kzo9I GATC 4 cut(s) 385, 391, 463, 616
LmnI GCTCC 2 cut(s) 44, 364
Lsp1109I GCAGC 1 cut(s) 143
MaeI CTAG 1 cut(s) 420
MaeIII GTNAC 1 cut(s) 20
MalI GATC 4 cut(s) 387, 393, 465, 618
MboI GATC 4 cut(s) 385, 391, 463, 616
MboII GAAGA 9 cut(s) 18, 74, 242, 294, 473, 588, 591, 594, 611
MhlI GDGCHC 1 cut(s) 501
MluCI AATT 6 cut(s) 175, 331, 428, 450, 513, 576
MnlI CCTC 9 cut(s) 52, 83, 132, 194, 336, 370, 436, 604, 663
MroXI GAANNNNTTC 1 cut(s) 208
MseI TTAA 2 cut(s) 137, 431
MslI CAYNNNNRTG 3 cut(s) 387, 405, 570
MspI CCGG 3 cut(s) 142, 188, 279
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 153
NdeII GATC 4 cut(s) 385, 391, 463, 616
NlaIII CATG 8 cut(s) 51, 98, 386, 392, 410, 505, 575, 648
NlaIV GGNNCC 1 cut(s) 269
NspV TTCGAA 1 cut(s) 481
PagI TCATGA 4 cut(s) 382, 388, 501, 571
PdmI GAANNNNTTC 1 cut(s) 208
PfeI GAWTC 2 cut(s) 316, 673
PinAI ACCGGT 1 cut(s) 141
PkrI GCNGC 3 cut(s) 158, 653, 656
PpuMI RGGWCCY 1 cut(s) 508
Psp124BI GAGCTC 1 cut(s) 501
Psp5II RGGWCCY 1 cut(s) 508
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 269
PspPI GGNCC 2 cut(s) 267, 508
PspPPI RGGWCCY 1 cut(s) 508
PstI CTGCAG 1 cut(s) 161
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
RseI CAYNNNNRTG 3 cut(s) 387, 405, 570
SacI GAGCTC 1 cut(s) 501
SaqAI TTAA 2 cut(s) 137, 431
SatI GCNGC 3 cut(s) 157, 652, 655
Sau3AI GATC 4 cut(s) 385, 391, 463, 616
Sau96I GGNCC 2 cut(s) 267, 508
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 501
SetI ASST 9 cut(s) 133, 158, 266, 347, 361, 442, 501, 513, 636
SfcI CTRYAG 1 cut(s) 157
SfuI TTCGAA 1 cut(s) 481
SinI GGWCC 2 cut(s) 267, 508
SmiMI CAYNNNNRTG 3 cut(s) 387, 405, 570
Sse9I AATT 6 cut(s) 175, 331, 428, 450, 513, 576
SsiI CCGC 4 cut(s) 147, 651, 654, 657
SspMI CTAG 1 cut(s) 420
SstI GAGCTC 1 cut(s) 501
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 548
TaqI TCGA 2 cut(s) 481, 638
TasI AATT 6 cut(s) 175, 331, 428, 450, 513, 576
TauI GCSGC 2 cut(s) 654, 657
TfiI GAWTC 2 cut(s) 316, 673
Tru1I TTAA 2 cut(s) 137, 431
Tru9I TTAA 2 cut(s) 137, 431
TscAI CASTG 1 cut(s) 326
TseI GCWGC 1 cut(s) 156
TspDTI ATGAA 6 cut(s) 81, 240, 321, 426, 518, 588
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 1 cut(s) 326
VpaK11BI GGWCC 2 cut(s) 267, 508
XmnI GAANNNNTTC 1 cut(s) 208
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.