RchiOBHm_Chr2g0101391

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0010518
Physical Location & Seq
Reverse (-)
12999558 .. 13002515
2958 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1056 bp
ATGGAGGTGAGAGGCCAAGATAAGGTTTTAGGGATGCCAACCACTTTGGGGTTCAATCCCCAACATAGAGACTCTTCTTCTTCCAAGCTCTCTTCTCCATCTCTTCATCATCATGTTAACAACACATTAATCTTTAACCACCCCCAAACCCTAGACCCTTTTTATCAGGCTCCACCTCATCATCATCATCATCATCAGCCTCAGCAATCGAATCCATACAAACCCAGTAGAGATCCTGACCCAATCCCTATCCCAAACCCAGATCCAAACCTATCACCAGCTGCTGTCTGCACCAGCCCAAGAGCAACAAGCGGCACACCAATTGCAAGCCGAGCAAACCACAGCTTCAAAGCAGCACCATCGGCACTGGCACCTGAGCCAATTACAGCTTCGAAAGCAGTTAGATATCGAGAATGCTTGAAGAATCACGCAGCGAGCACTGGAGGGCATGTACTGGATGGCTGCGGAGAGTTCATGCCGAGCGGAGAGGAAGACAGCCCGGGAGGACTAAAATGTGCAGCATGTGAGTGCCACAGGAATTTCCACAGGAAAGAGATCGAGGGTGAAACCCAACTAGTACATGTACCCAATAATTACCATGTCCTTAACCACCACAACAAAAACAGCCACAGTAGCCGGAATGCATCATCAGCACCTGTTCTATCCTCACTCCCTCCACCACCTCCTGTTCATCATCATCATCAGTACCATCATTTCCCAGCCACTAGTCCTTCCGTGGCCGGATCATTTCCTCCTGGGATGATGACTTTTGGAGGTGGCGGAGGGGCGGCTGAGTCATCTAGTGAGGATCTCAACCACATCCACATGTACGAGCAGTCAAATCAGGCCGGGGGTTCGAAGAAGCGGTTTCGGACAAAGTTCAGCCAAGAGCAGAAGGACAAGATGATGGAGGTGGCAGAAAAGTTGGGATGGAGGATCCAGAAGCACGATGAGCAAGAGGTGCAGCAGTTGTGTTCTGAATTGGGTATAAGGAGACAGGTTTTCAAGGTATGGATGCACAATAATAAACAAGCCATGAAGAAGAAGCAACTGTAA

Protein Analysis

351

Amino Acids

38.82

Weight (kDa)

8.89

Isoelectric Point (pI)

71.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 134 - 186 1.1e-29 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 370
AccBSI CCGCTC 1 cut(s) 483
AciI CCGC 6 cut(s) 312, 465, 483, 780, 788, 865
AclWI GGATC 6 cut(s) 227, 257, 751, 816, 931, 944
AcoI YGGCCR 1 cut(s) 738
AcsI RAATTY 1 cut(s) 538
AfaI GTAC 5 cut(s) 453, 579, 585, 707, 830
AfiI CCNNNNNNNGG 2 cut(s) 22, 48
AflIII ACRYGT 2 cut(s) 580, 825
AgsI TTSAA 4 cut(s) 55, 349, 421, 1006
AhlI ACTAGT 2 cut(s) 574, 725
AjnI CCWGG 1 cut(s) 754
AjuI GAANNNNNNNTTGG 2 cut(s) 373, 405
AluBI AGCT 4 cut(s) 88, 281, 345, 389
AluI AGCT 4 cut(s) 88, 281, 345, 389
Alw21I GWGCWC 1 cut(s) 440
Alw26I GTCTC 2 cut(s) 63, 988
AlwI GGATC 6 cut(s) 227, 257, 751, 816, 931, 944
AlwNI CAGNNNCTG 2 cut(s) 284, 656
Ama87I CYCGRG 1 cut(s) 499
AoxI GGCC 3 cut(s) 13, 738, 846
ApeKI GCWGC 6 cut(s) 281, 353, 431, 462, 518, 964
ApoI RAATTY 1 cut(s) 538
AseI ATTAAT 1 cut(s) 128
AsuC2I CCSGG 3 cut(s) 500, 501, 850
AsuHPI GGTGA 3 cut(s) 19, 267, 575
AsuII TTCGAA 2 cut(s) 392, 857
AvaI CYCGRG 1 cut(s) 499
BamHI GGATCC 1 cut(s) 936
BanI GGYRCC 1 cut(s) 370
BbsI GAAGAC 1 cut(s) 498
Bbv12I GWGCWC 1 cut(s) 440
BbvCI CCTCAGC 1 cut(s) 201
BbvI GCAGC 6 cut(s) 268, 365, 443, 449, 530, 976
BccI CCATC 6 cut(s) 106, 367, 452, 717, 901, 924
BcgI CGANNNNNNTGC 2 cut(s) 342, 376
BciT130I CCWGG 1 cut(s) 756
BcnI CCSGG 3 cut(s) 500, 501, 850
BcoDI GTCTC 2 cut(s) 63, 988
BcuI ACTAGT 2 cut(s) 574, 725
BfaI CTAG 4 cut(s) 152, 575, 726, 801
BisI GCNGC 8 cut(s) 282, 313, 354, 432, 463, 519, 789, 965
BlsI GCNGC 8 cut(s) 283, 314, 355, 433, 464, 520, 790, 966
Bme1390I CCNGG 4 cut(s) 500, 501, 756, 850
BmeT110I CYCGRG 1 cut(s) 499
BmiI GGNNCC 3 cut(s) 171, 372, 938
BmrFI CCNGG 4 cut(s) 500, 501, 756, 850
BmrI ACTGGG 1 cut(s) 219
BmsI GCATC 3 cut(s) 24, 653, 1005
BmuI ACTGGG 1 cut(s) 219
BpiI GAAGAC 1 cut(s) 498
BpmI CTGGAG 1 cut(s) 462
Bpu10I CCTNAGC 2 cut(s) 201, 375
Bpu14I TTCGAA 2 cut(s) 392, 857
BpuMI CCSGG 3 cut(s) 500, 501, 850
BsaJI CCNNGG 4 cut(s) 499, 735, 755, 849
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 48
Bse1I ACTGG 4 cut(s) 225, 372, 445, 459
BseBI CCWGG 1 cut(s) 756
BseDI CCNNGG 4 cut(s) 499, 735, 755, 849
BseGI GGATG 6 cut(s) 39, 463, 765, 819, 935, 1020
BseLI CCNNNNNNNGG 2 cut(s) 22, 48
BseMII CTCAG 3 cut(s) 215, 366, 783
BseNI ACTGG 4 cut(s) 225, 372, 445, 459
BseXI GCAGC 6 cut(s) 268, 365, 443, 449, 530, 976
BseYI CCCAGC 1 cut(s) 718
BsgI GTGCAG 3 cut(s) 274, 537, 983
BshFI GGCC 3 cut(s) 15, 740, 848
BshNI GGYRCC 1 cut(s) 370
BsiHKAI GWGCWC 1 cut(s) 440
BsiHKCI CYCGRG 1 cut(s) 499
BsiSI CCGG 4 cut(s) 500, 637, 741, 849
BslI CCNNNNNNNGG 2 cut(s) 22, 48
BsmAI GTCTC 2 cut(s) 63, 988
BsmI GAATGC 2 cut(s) 419, 646
BsnI GGCC 3 cut(s) 15, 740, 848
BsoBI CYCGRG 1 cut(s) 499
Bsp119I TTCGAA 2 cut(s) 392, 857
Bsp1286I GDGCHC 1 cut(s) 440
Bsp143I GATC 6 cut(s) 232, 262, 555, 743, 808, 936
BspACI CCGC 6 cut(s) 312, 465, 483, 780, 788, 865
BspANI GGCC 3 cut(s) 15, 740, 848
BspCNI CTCAG 3 cut(s) 214, 367, 784
BspLI GGNNCC 3 cut(s) 171, 372, 938
BspPI GGATC 6 cut(s) 227, 257, 751, 816, 931, 944
BspT104I TTCGAA 2 cut(s) 392, 857
BspT107I GGYRCC 1 cut(s) 370
BsrBI CCGCTC 1 cut(s) 483
BsrI ACTGG 4 cut(s) 225, 372, 445, 459
BssECI CCNNGG 4 cut(s) 499, 735, 755, 849
BssMI GATC 6 cut(s) 232, 262, 555, 743, 808, 936
Bst2UI CCWGG 1 cut(s) 756
Bst4CI ACNGT 2 cut(s) 632, 1053
Bst6I CTCTTC 3 cut(s) 79, 97, 108
BstAPI GCANNNNNTGC 1 cut(s) 961
BstBI TTCGAA 2 cut(s) 392, 857
BstC8I GCNNGC 2 cut(s) 328, 436
BstDEI CTNAG 3 cut(s) 201, 375, 792
BstDSI CCRYGG 1 cut(s) 735
BstF5I GGATG 6 cut(s) 39, 463, 765, 819, 935, 1020
BstKTI GATC 6 cut(s) 235, 265, 558, 746, 811, 939
BstMAI GTCTC 2 cut(s) 63, 988
BstMBI GATC 6 cut(s) 232, 262, 555, 743, 808, 936
BstMWI GCNNNNNNNGC 7 cut(s) 332, 362, 395, 633, 650, 952, 961
BstNI CCWGG 1 cut(s) 756
BstNSI RCATGY 4 cut(s) 452, 525, 584, 829
BstSCI CCNGG 4 cut(s) 498, 499, 754, 848
BstV1I GCAGC 6 cut(s) 268, 365, 443, 449, 530, 976
BstV2I GAAGAC 1 cut(s) 498
BstX2I RGATCY 4 cut(s) 232, 262, 808, 936
BstYI RGATCY 4 cut(s) 232, 262, 808, 936
BsuRI GGCC 3 cut(s) 15, 740, 848
BtgI CCRYGG 1 cut(s) 735
BtsCI GGATG 6 cut(s) 39, 463, 765, 819, 935, 1020
BtsIMutI CAGTG 2 cut(s) 365, 438
Cac8I GCNNGC 2 cut(s) 328, 436
CaiI CAGNNNCTG 2 cut(s) 284, 656
Cfr9I CCCGGG 1 cut(s) 499
Csp6I GTAC 5 cut(s) 452, 578, 584, 706, 829
CviAII CATG 8 cut(s) 113, 449, 475, 522, 581, 599, 826, 1036
CviQI GTAC 5 cut(s) 452, 578, 584, 706, 829
DdeI CTNAG 3 cut(s) 201, 375, 792
DpnI GATC 6 cut(s) 234, 264, 557, 745, 810, 938
DpnII GATC 6 cut(s) 232, 262, 555, 743, 808, 936
EaeI YGGCCR 1 cut(s) 738
Eam1104I CTCTTC 3 cut(s) 79, 97, 108
EarI CTCTTC 3 cut(s) 79, 97, 108
EciI GGCGGA 1 cut(s) 795
Eco32I GATATC 1 cut(s) 407
Eco88I CYCGRG 1 cut(s) 499
EcoRII CCWGG 1 cut(s) 754
EcoRV GATATC 1 cut(s) 407
EcoT22I ATGCAT 1 cut(s) 646
FaeI CATG 8 cut(s) 116, 452, 478, 525, 584, 602, 829, 1039
FatI CATG 8 cut(s) 112, 448, 474, 521, 580, 598, 825, 1035
Fnu4HI GCNGC 8 cut(s) 282, 313, 354, 432, 463, 519, 789, 965
FokI GGATG 6 cut(s) 46, 470, 772, 806, 942, 1027
Fsp4HI GCNGC 8 cut(s) 282, 313, 354, 432, 463, 519, 789, 965
FspBI CTAG 4 cut(s) 152, 575, 726, 801
GluI GCNGC 8 cut(s) 282, 313, 354, 432, 463, 519, 789, 965
GsaI CCCAGC 1 cut(s) 722
GsuI CTGGAG 1 cut(s) 462
HaeIII GGCC 3 cut(s) 15, 740, 848
HapII CCGG 4 cut(s) 500, 637, 741, 849
Hin1II CATG 8 cut(s) 116, 452, 478, 525, 584, 602, 829, 1039
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 4 cut(s) 71, 211, 424, 794
HpaI GTTAAC 1 cut(s) 118
HpaII CCGG 4 cut(s) 500, 637, 741, 849
HphI GGTGA 3 cut(s) 19, 267, 575
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 2 cut(s) 873, 979
Hpy188III TCNNGA 3 cut(s) 236, 410, 940
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 2 cut(s) 741, 889
HpyCH4III ACNGT 2 cut(s) 632, 1053
HpyCH4V TGCA 6 cut(s) 291, 326, 518, 644, 964, 1018
HpyF10VI GCNNNNNNNGC 7 cut(s) 332, 362, 395, 633, 650, 952, 961
HpyF3I CTNAG 3 cut(s) 201, 375, 792
Hsp92II CATG 8 cut(s) 116, 452, 478, 525, 584, 602, 829, 1039
KspAI GTTAAC 1 cut(s) 118
Kzo9I GATC 6 cut(s) 232, 262, 555, 743, 808, 936
LmnI GCTCC 1 cut(s) 175
Lsp1109I GCAGC 6 cut(s) 268, 365, 443, 449, 530, 976
LweI GCATC 3 cut(s) 24, 653, 1005
MaeI CTAG 4 cut(s) 152, 575, 726, 801
MalI GATC 6 cut(s) 234, 264, 557, 745, 810, 938
MbiI CCGCTC 1 cut(s) 483
MboI GATC 6 cut(s) 232, 262, 555, 743, 808, 936
MfeI CAATTG 1 cut(s) 321
MflI RGATCY 4 cut(s) 232, 262, 808, 936
MhlI GDGCHC 1 cut(s) 440
MluCI AATT 5 cut(s) 321, 381, 538, 592, 980
MlyI GAGTC 2 cut(s) 65, 803
Mph1103I ATGCAT 1 cut(s) 646
MseI TTAA 4 cut(s) 117, 128, 135, 606
MslI CAYNNNNRTG 3 cut(s) 111, 526, 824
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 4 cut(s) 500, 637, 741, 849
MspR9I CCNGG 4 cut(s) 500, 501, 756, 850
MunI CAATTG 1 cut(s) 321
Mva1269I GAATGC 2 cut(s) 419, 646
MvaI CCWGG 1 cut(s) 756
MwoI GCNNNNNNNGC 7 cut(s) 332, 362, 395, 633, 650, 952, 961
NciI CCSGG 3 cut(s) 500, 501, 850
NdeII GATC 6 cut(s) 232, 262, 555, 743, 808, 936
NlaIII CATG 8 cut(s) 116, 452, 478, 525, 584, 602, 829, 1039
NlaIV GGNNCC 3 cut(s) 171, 372, 938
NmeAIII GCCGAG 2 cut(s) 356, 504
NsiI ATGCAT 1 cut(s) 646
NspI RCATGY 4 cut(s) 452, 525, 584, 829
NspV TTCGAA 2 cut(s) 392, 857
PciI ACATGT 2 cut(s) 580, 825
PctI GAATGC 2 cut(s) 419, 646
PfeI GAWTC 2 cut(s) 211, 424
PkrI GCNGC 8 cut(s) 283, 314, 355, 433, 464, 520, 790, 966
PleI GAGTC 2 cut(s) 65, 802
PpsI GAGTC 2 cut(s) 65, 802
PscI ACATGT 2 cut(s) 580, 825
PshBI ATTAAT 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 754
PspFI CCCAGC 1 cut(s) 718
PspGI CCWGG 1 cut(s) 754
PspN4I GGNNCC 3 cut(s) 171, 372, 938
PstNI CAGNNNCTG 2 cut(s) 284, 656
PsuI RGATCY 4 cut(s) 232, 262, 808, 936
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 5 cut(s) 453, 579, 585, 707, 830
RsaNI GTAC 5 cut(s) 452, 578, 584, 706, 829
RseI CAYNNNNRTG 3 cut(s) 111, 526, 824
SaqAI TTAA 4 cut(s) 117, 128, 135, 606
SatI GCNGC 8 cut(s) 282, 313, 354, 432, 463, 519, 789, 965
Sau3AI GATC 6 cut(s) 232, 262, 555, 743, 808, 936
SchI GAGTC 2 cut(s) 65, 803
ScrFI CCNGG 4 cut(s) 500, 501, 756, 850
SduI GDGCHC 1 cut(s) 440
SfaNI GCATC 3 cut(s) 24, 653, 1005
SfuI TTCGAA 2 cut(s) 392, 857
SmaI CCCGGG 1 cut(s) 501
SmiMI CAYNNNNRTG 3 cut(s) 111, 526, 824
SpeI ACTAGT 2 cut(s) 574, 725
Sse9I AATT 5 cut(s) 321, 381, 538, 592, 980
SsiI CCGC 6 cut(s) 312, 465, 483, 780, 788, 865
SspMI CTAG 4 cut(s) 152, 575, 726, 801
StyD4I CCNGG 4 cut(s) 498, 499, 754, 848
TaaI ACNGT 2 cut(s) 632, 1053
TaqI TCGA 5 cut(s) 209, 392, 409, 558, 857
TasI AATT 5 cut(s) 321, 381, 538, 592, 980
TatI WGTACW 2 cut(s) 451, 577
TauI GCSGC 2 cut(s) 315, 791
TfiI GAWTC 2 cut(s) 211, 424
Tru1I TTAA 4 cut(s) 117, 128, 135, 606
Tru9I TTAA 4 cut(s) 117, 128, 135, 606
TscAI CASTG 2 cut(s) 372, 445
TseI GCWGC 6 cut(s) 281, 353, 431, 462, 518, 964
TspDTI ATGAA 4 cut(s) 95, 463, 680, 1052
TspGWI ACGGA 1 cut(s) 724
TspMI CCCGGG 1 cut(s) 499
TspRI CASTG 2 cut(s) 372, 445
VspI ATTAAT 1 cut(s) 128
XapI RAATTY 1 cut(s) 538
XceI RCATGY 4 cut(s) 452, 525, 584, 829
XmaI CCCGGG 1 cut(s) 499
XspI CTAG 4 cut(s) 152, 575, 726, 801
Zsp2I ATGCAT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.