Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013739

Physical Location & Seq

Genomic Coordinates Forward (+)

13090453 .. 13092705

Gene Structure 2253 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTCTGGTAAACCGACCAAAATTGATCTGGACAAGGACACCCGAATTGATGTGCGATGCCAGATTCATCAATTGACTTTCAGTCCTCATACAGATGCCAAAGGGATTATGGATCTGGTGAAGTTTCTTTCTCCCAAGCACGTGATACTTGTTCATGGTGAGAAGCCTAGGATGGCTACTCTGAAAGGAAGAATTCAATCCGAACTGGGAATTCAAAGTTGCTCAAATCCAAACTTCAAGTTTTCCACAGGCGGCTCAGAACACGAACAAATCCAAACTCCGATGCATTTTTTTTTTCGGGATGTCCCGGTCCCGACCCGGTACTGTTCGGGTTCGGGCCCGTCGGGATCACTTCTCAAAATAGCATTAACCGTCCCGTCCCGTCCCGAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beta-Casp Lactamase_B_6 RMMBL zf-RING_2

Protein Analysis

131

Amino Acids

14.56

Weight (kDa)

9.47

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RMMBL	PF07521	15 - 72	4.3e-16	Zn-dependent metallo-hydrolase RNA specificity domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013739)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G065700_v2.0.a1 Prupe.3G065900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0319151 RchiOBHm_Chr1g0374451 RchiOBHm_Chr2g0101461 RchiOBHm_Chr6g0263901 RchiOBHm_Chr6g0304581
rosa_multiflora	Rmu_sc0004670.1_g000026 Rmu_sc0012551.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319370 Rroxscaffold_6G00425380
rosa_rugosa	Rorug02G0653500 Rorug02G0653500 Rorug02G0653500
rosa_samantha	Rh2CG153100 Rh3CG346600 Rh4BG328800 Rh5DG226000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	252
AclWI	GGATC	2 cut(s)	120, 355
AcsI	RAATTY	2 cut(s)	192, 210
AcvI	CACGTG	1 cut(s)	142
AfaI	GTAC	1 cut(s)	323
AgsI	TTSAA	3 cut(s)	197, 215, 238
AhdI	GACNNNNNGTC	1 cut(s)	81
AlwI	GGATC	2 cut(s)	120, 355
AoxI	GGCC	1 cut(s)	337
ApaI	GGGCCC	1 cut(s)	341
ApoI	RAATTY	2 cut(s)	192, 210
AspA2I	CCTAGG	1 cut(s)	167
AspS9I	GGNCC	3 cut(s)	310, 337, 338
AsuC2I	CCSGG	2 cut(s)	308, 319
AsuHPI	GGTGA	2 cut(s)	130, 170
AvaII	GGWCC	1 cut(s)	310
AvrII	CCTAGG	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	341
BbrPI	CACGTG	1 cut(s)	142
BccI	CCATC	1 cut(s)	166
BcnI	CCSGG	2 cut(s)	308, 319
BfaI	CTAG	1 cut(s)	168
BisI	GCNGC	1 cut(s)	253
BlnI	CCTAGG	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	254
Bme1390I	CCNGG	2 cut(s)	308, 319
Bme18I	GGWCC	1 cut(s)	310
BmeRI	GACNNNNNGTC	1 cut(s)	81
BmgT120I	GGNCC	3 cut(s)	310, 337, 338
BmiI	GGNNCC	2 cut(s)	312, 339
BmrFI	CCNGG	2 cut(s)	308, 319
BmrI	ACTGGG	1 cut(s)	215
BmsI	GCATC	3 cut(s)	47, 85, 273
BmuI	ACTGGG	1 cut(s)	215
BpuMI	CCSGG	2 cut(s)	308, 319
BsaAI	YACGTR	1 cut(s)	142
BsaJI	CCNNGG	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	2 cut(s)	177, 307
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	341
BshFI	GGCC	1 cut(s)	339
BsiSI	CCGG	2 cut(s)	308, 319
BslFI	GGGAC	5 cut(s)	290, 296, 359, 364, 369
BsmFI	GGGAC	5 cut(s)	290, 296, 359, 364, 369
BsnI	GGCC	1 cut(s)	339
Bsp120I	GGGCCC	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp143I	GATC	3 cut(s)	25, 112, 347
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	1 cut(s)	269
BspLI	GGNNCC	2 cut(s)	312, 339
BspPI	GGATC	2 cut(s)	120, 355
BsrI	ACTGG	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	3 cut(s)	25, 112, 347
BssT1I	CCWWGG	1 cut(s)	167
Bst4CI	ACNGT	2 cut(s)	326, 373
BstBAI	YACGTR	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	256
BstF5I	GGATG	2 cut(s)	177, 307
BstKTI	GATC	3 cut(s)	28, 115, 350
BstMBI	GATC	3 cut(s)	25, 112, 347
BstSCI	CCNGG	2 cut(s)	306, 317
BstSLI	GKGCMC	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	339
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	2 cut(s)	177, 307
Cfr13I	GGNCC	3 cut(s)	310, 337, 338
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	4 cut(s)	166, 176, 255, 339
CviKI_1	RGCY	4 cut(s)	166, 176, 255, 339
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	256
DpnI	GATC	3 cut(s)	27, 114, 349
DpnII	GATC	3 cut(s)	25, 112, 347
DriI	GACNNNNNGTC	1 cut(s)	81
Eam1105I	GACNNNNNGTC	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	167
Eco24I	GRGCYC	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	310
Eco72I	CACGTG	1 cut(s)	142
EcoRI	GAATTC	2 cut(s)	192, 210
EcoT14I	CCWWGG	1 cut(s)	167
EcoT22I	ATGCAT	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	1 cut(s)	158
FaiI	YATR	3 cut(s)	90, 110, 156
FaqI	GGGAC	5 cut(s)	290, 296, 359, 364, 369
FatI	CATG	1 cut(s)	154
Fnu4HI	GCNGC	1 cut(s)	253
FokI	GGATG	2 cut(s)	184, 314
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	1 cut(s)	253
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	1 cut(s)	253
HaeIII	GGCC	1 cut(s)	339
HapII	CCGG	2 cut(s)	308, 319
Hin1II	CATG	1 cut(s)	158
HinfI	GANTC	1 cut(s)	64
HpaII	CCGG	2 cut(s)	308, 319
HphI	GGTGA	2 cut(s)	130, 170
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	4 cut(s)	183, 202, 259, 282
Hpy188III	TCNNGA	5 cut(s)	29, 299, 313, 345, 386
Hpy8I	GTNNAC	1 cut(s)	11
Hpy99I	CGWCG	1 cut(s)	346
HpyCH4III	ACNGT	2 cut(s)	326, 373
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	1 cut(s)	286
HpyF3I	CTNAG	1 cut(s)	256
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	158
Kzo9I	GATC	3 cut(s)	25, 112, 347
LpnPI	CCDG	7 cut(s)	14, 74, 101, 191, 234, 321, 332
LweI	GCATC	3 cut(s)	47, 85, 273
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	141
MalI	GATC	3 cut(s)	27, 114, 349
MboI	GATC	3 cut(s)	25, 112, 347
MboII	GAAGA	1 cut(s)	201
MfeI	CAATTG	1 cut(s)	71
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	341
MluCI	AATT	5 cut(s)	21, 45, 71, 192, 210
MnlI	CCTC	1 cut(s)	96
Mph1103I	ATGCAT	1 cut(s)	288
MseI	TTAA	1 cut(s)	368
MslI	CAYNNNNRTG	1 cut(s)	93
MspI	CCGG	2 cut(s)	308, 319
MspR9I	CCNGG	2 cut(s)	308, 319
MunI	CAATTG	1 cut(s)	71
NciI	CCSGG	2 cut(s)	308, 319
NdeII	GATC	3 cut(s)	25, 112, 347
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	2 cut(s)	312, 339
NsiI	ATGCAT	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	254
PmaCI	CACGTG	1 cut(s)	142
PmlI	CACGTG	1 cut(s)	142
Ppu21I	YACGTR	1 cut(s)	142
PspCI	CACGTG	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	312, 339
PspOMI	GGGCCC	1 cut(s)	337
PspPI	GGNCC	3 cut(s)	310, 337, 338
PsuI	RGATCY	1 cut(s)	112
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	1 cut(s)	253
Sau3AI	GATC	3 cut(s)	25, 112, 347
Sau96I	GGNCC	3 cut(s)	310, 337, 338
ScrFI	CCNGG	2 cut(s)	308, 319
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	1 cut(s)	144
SfaNI	GCATC	3 cut(s)	47, 85, 273
SinI	GGWCC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	93
Sse9I	AATT	5 cut(s)	21, 45, 71, 192, 210
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	306, 317
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	2 cut(s)	326, 373
TaiI	ACGT	1 cut(s)	144
TasI	AATT	5 cut(s)	21, 45, 71, 192, 210
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TspDTI	ATGAA	2 cut(s)	56, 143
VpaK11BI	GGWCC	1 cut(s)	310
XapI	RAATTY	2 cut(s)	192, 210
XcmI	CCANNNNNNNNNTGG	2 cut(s)	25, 106
XmaJI	CCTAGG	1 cut(s)	167
XspI	CTAG	1 cut(s)	168
Zsp2I	ATGCAT	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.