Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0013739

Physical Location & Seq

Genomic Coordinates Reverse (-)

39464430 .. 39464748

Gene Structure 319 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG346600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGTCTGGTAAACCGACCAAAATTGATCTGGACAAGGACACCCGAATTGATGTGCGATGCCAGATTCATCAATTGACTTTCAGTCCTCATACAGATGCCAAAGGGATTATGGATTTGGTGAAGTTTCTTTCTCCCAAGCACGTGATACTTGTTCATGGTGAGAAGCCTAGGATGGCTACTCTGAAAGGAAGAATTCAATCCGAACTGGGAATTCAAAGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beta-Casp Lactamase_B_6 RMMBL zf-RING_2

Protein Analysis

74

Amino Acids

8.31

Weight (kDa)

9.39

Isoelectric Point (pI)

35.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RMMBL	PF07521	15 - 72	9.6e-17	Zn-dependent metallo-hydrolase RNA specificity domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013739)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G065700_v2.0.a1 Prupe.3G065900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0319151 RchiOBHm_Chr1g0374451 RchiOBHm_Chr2g0101461 RchiOBHm_Chr6g0263901 RchiOBHm_Chr6g0304581
rosa_multiflora	Rmu_sc0004670.1_g000026 Rmu_sc0012551.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319370 Rroxscaffold_6G00425380
rosa_rugosa	Rorug02G0653500 Rorug02G0653500 Rorug02G0653500
rosa_samantha	Rh2CG153100 Rh3CG346600 Rh4BG328800 Rh5DG226000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	192, 210
AcvI	CACGTG	1 cut(s)	142
AgsI	TTSAA	2 cut(s)	197, 215
AhdI	GACNNNNNGTC	1 cut(s)	81
ApoI	RAATTY	2 cut(s)	192, 210
AspA2I	CCTAGG	1 cut(s)	167
AsuHPI	GGTGA	2 cut(s)	130, 170
AvrII	CCTAGG	1 cut(s)	167
BbrPI	CACGTG	1 cut(s)	142
BccI	CCATC	1 cut(s)	166
BfaI	CTAG	1 cut(s)	168
BlnI	CCTAGG	1 cut(s)	167
BmeRI	GACNNNNNGTC	1 cut(s)	81
BmrI	ACTGGG	1 cut(s)	215
BmsI	GCATC	2 cut(s)	47, 85
BmuI	ACTGGG	1 cut(s)	215
BsaAI	YACGTR	1 cut(s)	142
BsaJI	CCNNGG	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	1 cut(s)	25
BssT1I	CCWWGG	1 cut(s)	167
BstBAI	YACGTR	1 cut(s)	142
BstF5I	GGATG	1 cut(s)	177
BstKTI	GATC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	25
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	177
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	2 cut(s)	166, 176
CviKI_1	RGCY	2 cut(s)	166, 176
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
DriI	GACNNNNNGTC	1 cut(s)	81
Eam1105I	GACNNNNNGTC	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	167
Eco72I	CACGTG	1 cut(s)	142
EcoRI	GAATTC	2 cut(s)	192, 210
EcoT14I	CCWWGG	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	1 cut(s)	158
FaiI	YATR	3 cut(s)	90, 110, 156
FatI	CATG	1 cut(s)	154
FokI	GGATG	1 cut(s)	184
FspBI	CTAG	1 cut(s)	168
Hin1II	CATG	1 cut(s)	158
HinfI	GANTC	1 cut(s)	64
HphI	GGTGA	2 cut(s)	130, 170
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	2 cut(s)	183, 202
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	158
Kzo9I	GATC	1 cut(s)	25
LpnPI	CCDG	3 cut(s)	14, 74, 191
LweI	GCATC	2 cut(s)	47, 85
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	141
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	1 cut(s)	201
MfeI	CAATTG	1 cut(s)	71
MluCI	AATT	5 cut(s)	21, 45, 71, 192, 210
MnlI	CCTC	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	93
MunI	CAATTG	1 cut(s)	71
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	64
PmaCI	CACGTG	1 cut(s)	142
PmlI	CACGTG	1 cut(s)	142
Ppu21I	YACGTR	1 cut(s)	142
PspCI	CACGTG	1 cut(s)	142
RseI	CAYNNNNRTG	1 cut(s)	93
Sau3AI	GATC	1 cut(s)	25
SetI	ASST	1 cut(s)	144
SfaNI	GCATC	2 cut(s)	47, 85
SmiMI	CAYNNNNRTG	1 cut(s)	93
Sse9I	AATT	5 cut(s)	21, 45, 71, 192, 210
SspMI	CTAG	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	167
TaiI	ACGT	1 cut(s)	144
TasI	AATT	5 cut(s)	21, 45, 71, 192, 210
TfiI	GAWTC	1 cut(s)	64
TspDTI	ATGAA	2 cut(s)	56, 143
XapI	RAATTY	2 cut(s)	192, 210
XcmI	CCANNNNNNNNNTGG	2 cut(s)	25, 106
XmaJI	CCTAGG	1 cut(s)	167
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.