Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013739

Physical Location & Seq

Genomic Coordinates Forward (+)

18893646 .. 18894316

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23669

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTCTGGTACACCGACCAAAATTGATCTGGACAAGGACACCCAAATTGATGTGCGATGCCAGATTCATCAATTGACTTTCAGTCCTCATACAGATGCCAAAGGGATTATGGATCTGGTGAAGTTTCTTTCTCCCAAGCACGTGATACTTGTTCATGGTGAGAAGCCTAGGATGGCTACTCTGAAAGGAAGAATTCAATCCGAACTGGGAATTCAAAGTTGCTCAAATCCAAACTTCAAGTTTTCTACAGGCGGCTCACAACACGAACAAATCCAAACTCCGATGCATTTTTTTTTTCGGGATGTCCCGGTCCCGACCCGGTCCCGACCCGGTCCCAACCCGGTCCTGTTCGGGTTCGGGCCCGTCGGGATCACTTCTCAAAATAGCATTAACCGTCCCGTCCCGTCCCGAAAAATAATTCCGGGCCCGGGATCGGGATTACCAAGATCCCGGCCCGTCCCGGCCCGTGCCCAGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beta-Casp Lactamase_B_6 RMMBL zf-RING_2

Protein Analysis

159

Amino Acids

17.44

Weight (kDa)

10.48

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RMMBL	PF07521	16 - 72	9.4e-16	Zn-dependent metallo-hydrolase RNA specificity domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013739)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G065700_v2.0.a1 Prupe.3G065900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0319151 RchiOBHm_Chr1g0374451 RchiOBHm_Chr2g0101461 RchiOBHm_Chr6g0263901 RchiOBHm_Chr6g0304581
rosa_multiflora	Rmu_sc0004670.1_g000026 Rmu_sc0012551.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319370 Rroxscaffold_6G00425380
rosa_rugosa	Rorug02G0653500 Rorug02G0653500 Rorug02G0653500
rosa_samantha	Rh2CG153100 Rh3CG346600 Rh4BG328800 Rh5DG226000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	252
AclWI	GGATC	4 cut(s)	120, 377, 439, 441
AcsI	RAATTY	2 cut(s)	192, 210
AcvI	CACGTG	1 cut(s)	142
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	3 cut(s)	428, 433, 434
AgsI	TTSAA	3 cut(s)	197, 215, 238
AhdI	GACNNNNNGTC	1 cut(s)	81
AlwI	GGATC	4 cut(s)	120, 377, 439, 441
Ama87I	CYCGRG	1 cut(s)	427
AoxI	GGCC	4 cut(s)	359, 424, 452, 462
ApaI	GGGCCC	2 cut(s)	363, 428
ApoI	RAATTY	2 cut(s)	192, 210
AspA2I	CCTAGG	1 cut(s)	167
AsuC2I	CCSGG	9 cut(s)	308, 319, 330, 341, 423, 428, 429, 451, 461
AsuHPI	GGTGA	2 cut(s)	130, 170
AvaI	CYCGRG	1 cut(s)	427
AvaII	GGWCC	4 cut(s)	310, 321, 332, 343
AvrII	CCTAGG	1 cut(s)	167
BaeGI	GKGCMC	3 cut(s)	363, 428, 472
BanII	GRGCYC	2 cut(s)	363, 428
BbrPI	CACGTG	1 cut(s)	142
BccI	CCATC	1 cut(s)	166
BcnI	CCSGG	9 cut(s)	308, 319, 330, 341, 423, 428, 429, 451, 461
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	1 cut(s)	253
BlnI	CCTAGG	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	254
Bme1390I	CCNGG	9 cut(s)	308, 319, 330, 341, 423, 428, 429, 451, 461
Bme18I	GGWCC	4 cut(s)	310, 321, 332, 343
BmeRI	GACNNNNNGTC	1 cut(s)	81
BmeT110I	CYCGRG	1 cut(s)	427
BmiI	GGNNCC	5 cut(s)	312, 323, 334, 361, 426
BmrFI	CCNGG	9 cut(s)	308, 319, 330, 341, 423, 428, 429, 451, 461
BmrI	ACTGGG	1 cut(s)	215
BmsI	GCATC	3 cut(s)	47, 85, 273
BmuI	ACTGGG	1 cut(s)	215
BpuMI	CCSGG	9 cut(s)	308, 319, 330, 341, 423, 428, 429, 451, 461
BsaAI	YACGTR	1 cut(s)	142
BsaJI	CCNNGG	2 cut(s)	167, 427
Bsc4I	CCNNNNNNNGG	3 cut(s)	428, 433, 434
Bse1I	ACTGG	1 cut(s)	210
BseDI	CCNNGG	2 cut(s)	167, 427
BseGI	GGATG	2 cut(s)	177, 307
BseLI	CCNNNNNNNGG	3 cut(s)	428, 433, 434
BseNI	ACTGG	1 cut(s)	210
BseSI	GKGCMC	3 cut(s)	363, 428, 472
BseYI	CCCAGC	1 cut(s)	471
BshFI	GGCC	4 cut(s)	361, 426, 454, 464
BsiHKCI	CYCGRG	1 cut(s)	427
BsiSI	CCGG	8 cut(s)	308, 319, 330, 341, 422, 428, 451, 461
BslFI	GGGAC	8 cut(s)	290, 296, 307, 318, 381, 386, 391, 443
BslI	CCNNNNNNNGG	3 cut(s)	428, 433, 434
BsmFI	GGGAC	8 cut(s)	290, 296, 307, 318, 381, 386, 391, 443
BsnI	GGCC	4 cut(s)	361, 426, 454, 464
BsoBI	CYCGRG	1 cut(s)	427
Bsp120I	GGGCCC	2 cut(s)	359, 424
Bsp1286I	GDGCHC	3 cut(s)	363, 428, 472
Bsp143I	GATC	5 cut(s)	25, 112, 369, 431, 446
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	4 cut(s)	361, 426, 454, 464
BspLI	GGNNCC	5 cut(s)	312, 323, 334, 361, 426
BspPI	GGATC	4 cut(s)	120, 377, 439, 441
BsrI	ACTGG	1 cut(s)	210
BssECI	CCNNGG	2 cut(s)	167, 427
BssMI	GATC	5 cut(s)	25, 112, 369, 431, 446
BssT1I	CCWWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	395
BstBAI	YACGTR	1 cut(s)	142
BstF5I	GGATG	2 cut(s)	177, 307
BstKTI	GATC	5 cut(s)	28, 115, 372, 434, 449
BstMBI	GATC	5 cut(s)	25, 112, 369, 431, 446
BstSCI	CCNGG	9 cut(s)	306, 317, 328, 339, 421, 426, 427, 449, 459
BstSFI	CTRYAG	1 cut(s)	246
BstSLI	GKGCMC	3 cut(s)	363, 428, 472
BstX2I	RGATCY	2 cut(s)	112, 446
BstYI	RGATCY	2 cut(s)	112, 446
BsuRI	GGCC	4 cut(s)	361, 426, 454, 464
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	2 cut(s)	177, 307
Cfr9I	CCCGGG	1 cut(s)	427
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	8 cut(s)	166, 176, 255, 361, 426, 454, 464, 475
CviKI_1	RGCY	8 cut(s)	166, 176, 255, 361, 426, 454, 464, 475
CviQI	GTAC	1 cut(s)	9
DpnI	GATC	5 cut(s)	27, 114, 371, 433, 448
DpnII	GATC	5 cut(s)	25, 112, 369, 431, 446
DriI	GACNNNNNGTC	1 cut(s)	81
Eam1105I	GACNNNNNGTC	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	167
Eco24I	GRGCYC	2 cut(s)	363, 428
Eco47I	GGWCC	4 cut(s)	310, 321, 332, 343
Eco72I	CACGTG	1 cut(s)	142
Eco88I	CYCGRG	1 cut(s)	427
EcoRI	GAATTC	2 cut(s)	192, 210
EcoT14I	CCWWGG	1 cut(s)	167
EcoT22I	ATGCAT	1 cut(s)	288
EcoT38I	GRGCYC	2 cut(s)	363, 428
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	1 cut(s)	158
FaiI	YATR	3 cut(s)	90, 110, 156
FaqI	GGGAC	8 cut(s)	290, 296, 307, 318, 381, 386, 391, 443
FatI	CATG	1 cut(s)	154
Fnu4HI	GCNGC	1 cut(s)	253
FokI	GGATG	2 cut(s)	184, 314
FriOI	GRGCYC	2 cut(s)	363, 428
Fsp4HI	GCNGC	1 cut(s)	253
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	1 cut(s)	253
GsaI	CCCAGC	1 cut(s)	475
HaeIII	GGCC	4 cut(s)	361, 426, 454, 464
HapII	CCGG	8 cut(s)	308, 319, 330, 341, 422, 428, 451, 461
Hin1II	CATG	1 cut(s)	158
HinfI	GANTC	1 cut(s)	64
HpaII	CCGG	8 cut(s)	308, 319, 330, 341, 422, 428, 451, 461
HphI	GGTGA	2 cut(s)	130, 170
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	3 cut(s)	183, 202, 282
Hpy188III	TCNNGA	7 cut(s)	29, 299, 313, 324, 367, 408, 435
Hpy8I	GTNNAC	1 cut(s)	11
Hpy99I	CGWCG	1 cut(s)	368
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	1 cut(s)	286
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	158
Kzo9I	GATC	5 cut(s)	25, 112, 369, 431, 446
LweI	GCATC	3 cut(s)	47, 85, 273
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	141
MalI	GATC	5 cut(s)	27, 114, 371, 433, 448
MboI	GATC	5 cut(s)	25, 112, 369, 431, 446
MboII	GAAGA	1 cut(s)	201
MfeI	CAATTG	1 cut(s)	71
MflI	RGATCY	2 cut(s)	112, 446
MhlI	GDGCHC	3 cut(s)	363, 428, 472
MluCI	AATT	6 cut(s)	21, 45, 71, 192, 210, 417
MnlI	CCTC	1 cut(s)	96
Mph1103I	ATGCAT	1 cut(s)	288
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	93
MspI	CCGG	8 cut(s)	308, 319, 330, 341, 422, 428, 451, 461
MspR9I	CCNGG	9 cut(s)	308, 319, 330, 341, 423, 428, 429, 451, 461
MunI	CAATTG	1 cut(s)	71
NciI	CCSGG	9 cut(s)	308, 319, 330, 341, 423, 428, 429, 451, 461
NdeII	GATC	5 cut(s)	25, 112, 369, 431, 446
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	5 cut(s)	312, 323, 334, 361, 426
NsiI	ATGCAT	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	64
PflFI	GACNNNGTC	2 cut(s)	319, 330
PkrI	GCNGC	1 cut(s)	254
PmaCI	CACGTG	1 cut(s)	142
PmlI	CACGTG	1 cut(s)	142
Ppu21I	YACGTR	1 cut(s)	142
PspCI	CACGTG	1 cut(s)	142
PspFI	CCCAGC	1 cut(s)	471
PspN4I	GGNNCC	5 cut(s)	312, 323, 334, 361, 426
PspOMI	GGGCCC	2 cut(s)	359, 424
PsuI	RGATCY	2 cut(s)	112, 446
PsyI	GACNNNGTC	2 cut(s)	319, 330
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	1 cut(s)	253
Sau3AI	GATC	5 cut(s)	25, 112, 369, 431, 446
ScrFI	CCNGG	9 cut(s)	308, 319, 330, 341, 423, 428, 429, 451, 461
SduI	GDGCHC	3 cut(s)	363, 428, 472
SetI	ASST	1 cut(s)	144
SfaNI	GCATC	3 cut(s)	47, 85, 273
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	4 cut(s)	310, 321, 332, 343
SmaI	CCCGGG	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	93
Sse9I	AATT	6 cut(s)	21, 45, 71, 192, 210, 417
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	9 cut(s)	306, 317, 328, 339, 421, 426, 427, 449, 459
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	395
TaiI	ACGT	1 cut(s)	144
TasI	AATT	6 cut(s)	21, 45, 71, 192, 210, 417
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TspDTI	ATGAA	2 cut(s)	56, 143
TspMI	CCCGGG	1 cut(s)	427
Tth111I	GACNNNGTC	2 cut(s)	319, 330
VpaK11BI	GGWCC	4 cut(s)	310, 321, 332, 343
XapI	RAATTY	2 cut(s)	192, 210
XcmI	CCANNNNNNNNNTGG	2 cut(s)	25, 106
XmaI	CCCGGG	1 cut(s)	427
XmaJI	CCTAGG	1 cut(s)	167
XspI	CTAG	1 cut(s)	168
Zsp2I	ATGCAT	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.