RchiOBHm_Chr2g0102141

Cupin

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
13582162 .. 13585328
3167 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1845 bp
ATGGTTCAATATAAAATGTCTAACAACGATTCAAATCCACCGTTTTCACTTACTCTGTTCATCTTATTCTTCTTTCTTTCACTACCTGCCTTCTCTTCCTCTTTGAAGTCTTTGAAAAATGAGGAGGATTTTTTCAGTAGTGATGCCGGGTATCTGGTGAGGAGAGCTCAGAGGAGGGCGTTGGTTCAGACAGAGTACGGAGAAATCTCGTCCATTGATGTCACCGATGGACGGAGAGGGCCTTACCATGTCCAGTTCATCATCATGGAACCCAACTCGCTGTTCCTTCCGGTGCTGCTACACTCTGACATGGTGTTCTATGTCCACACAGGGAGTGGGAGGTTGAATTGGGCTCATGGAAAGGATGATCAAATCAACGAGGTTCCTTTAAAGCAAGGTGATATCCATAGACTCCGCCCAGGATCTGTCTTCTTTGTTCAGAGTGATTTACAGACCGAGCGTCAGAAACTTAGAATTAATGCAATCTTTGCAAATAGCGATGATGACGTATTTGACCCAACAATAGGAGCATACTCCAGTGTTAGGGACCTGGTCCGAGGCTTCGACACCAAAATCCTTCGGTCAGCTTTTCAGGTTTCTGAGGATGTGATCAAGTCGATAACAAATTCAACAGACCAATCAGCCATTATCCATGCAGTGCCAACGAAGAAAGAAACCTTTTGGGATTTGGAAGCTCGGTTCTTGAAAACCTTTATAGGAGCCAGTTATGATGGCATGGCATTAAACAAGAAGAAGCATAAGAAGAAAGAAAAATCAAAAACATATAATATTTTTGATGAGGACCCAGATTTCAAGAATTGTAACGGTTGGAGCCTCACCGTGAATGAGAGAAACTCGCCTTCATTGACTGGATCAAACATTGGTCTTTTCATGGTGAACTTGACGAAGGGTTCAATGATGGGGCCTCATTGGAATCCAAGGGCAACTGAGATCGCAGTTGTGTTACAGGGGCAAGGAATGGTCAGGGTGGTATGTGCTAGCACAGCAAAGAGATCAGAATGCAGAAATTTGAGGTTTAGGGTTCATGAAGGAGATGTATTTGCTGTACCTATGTTCCATCCAATGGCTCAGATGTCATATAATAATGACTCATTTGTGTTTATGGGGTTCAGCACGACAACAAGGAGAAATTATCCTCAATTTTTGGCTGGGAAATACTCGGTTCTCCAAACTTTGAACAGACAGGTCTTGGCAGTGTCTTTGAATGTTACCAACACCACAATCGATCAGCTTTTGGCTGCACAAACAGAATCAATCATACTCGACTGTACTTCTTGTGCTGAAAAAGAGGAGAAAGTAATGTTGGAAGAAATTGAAAAGGAAAGGGAGGAAGAGGAGGCTAAGAAGAGAGAGGAACAGAGGAAGAGAGAAGAGGAGCAACGGAAGAGAGAGGAGGAGCAGAGACAGAGAGAGGAGGAGGAAGCGAGAAAGAAAGAAGAGGAAGAAGAGAGGAGAAAGAGAGAAGAGGAAGAAGAGAGGAGGAAGAGAGAAGAGGAGGAAGAAGAAGAGAGGAGAAGGAGAGAAGAAGAAAGAAGAGAGGAGGAAGAACAAGAGAGGGAGAGGCAACAGGAAGAAGGAGGAGAAGCAGCAGAAAGGGAGCAAGAAGAGGCTAGGAGGCAAGAGGAAGAAGCAGAGAGTGAGAAAGAAGACACCAGGAGGCAACAACAAGAGGAGTACAGTAAAAGAAAAGAGAAAGAGGCCCAAACAGAGCAAGAGGAGGCTAGGAAACAACAAGAGGAAATAGAAGGAAGAACCAGACCGGAGGAGCAAGAGACGGAAGGTGACCAACGTTTTGACGGTGAAGCGGGAAGAAGAGAAATTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

614

Amino Acids

71.9

Weight (kDa)

5.17

Isoelectric Point (pI)

81.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 262 - 415 5.8e-38 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012303)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 94
AccB7I CCANNNNNTGG 1 cut(s) 1084
AciI CCGC 2 cut(s) 415, 1826
AclI AACGTT 1 cut(s) 1810
AclWI GGATC 2 cut(s) 430, 880
AcsI RAATTY 3 cut(s) 625, 1027, 1839
AfaI GTAC 4 cut(s) 197, 1068, 1291, 1697
AfiI CCNNNNNNNGG 4 cut(s) 231, 524, 543, 1084
AhdI GACNNNNNGTC 1 cut(s) 459
AjnI CCWGG 3 cut(s) 418, 549, 1673
AjuI GAANNNNNNNTTGG 4 cut(s) 266, 298, 1307, 1339
AloI GAACNNNNNNTCC 2 cut(s) 683, 715
AluBI AGCT 4 cut(s) 167, 587, 695, 1252
AluI AGCT 4 cut(s) 167, 587, 695, 1252
Alw21I GWGCWC 1 cut(s) 169
Alw26I GTCTC 2 cut(s) 1417, 1787
AlwI GGATC 2 cut(s) 430, 880
AlwNI CAGNNNCTG 1 cut(s) 425
AoxI GGCC 3 cut(s) 239, 923, 1719
ApeKI GCWGC 3 cut(s) 295, 1259, 1607
ApoI RAATTY 3 cut(s) 625, 1027, 1839
ArsI GACNNNNNNTTYG 2 cut(s) 1796, 1828
AseI ATTAAT 1 cut(s) 477
AspS9I GGNCC 6 cut(s) 239, 547, 553, 802, 923, 1720
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 7 cut(s) 169, 214, 410, 829, 907, 1814, 1832
AsuNHI GCTAGC 1 cut(s) 998
AvaII GGWCC 3 cut(s) 547, 553, 802
BanII GRGCYC 2 cut(s) 169, 355
BbsI GAAGAC 2 cut(s) 421, 1674
Bbv12I GWGCWC 1 cut(s) 169
BbvI GCAGC 3 cut(s) 282, 1246, 1619
BccI CCATC 4 cut(s) 221, 725, 913, 1086
BciT130I CCWGG 3 cut(s) 420, 551, 1675
BclI TGATCA 2 cut(s) 367, 609
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 1417, 1787
BfaI CTAG 3 cut(s) 999, 1632, 1743
BfuAI ACCTGC 1 cut(s) 94
BisI GCNGC 3 cut(s) 296, 1260, 1608
BlsI GCNGC 3 cut(s) 297, 1261, 1609
Bme1390I CCNGG 4 cut(s) 148, 420, 551, 1675
Bme18I GGWCC 3 cut(s) 547, 553, 802
BmeRI GACNNNNNGTC 1 cut(s) 459
BmgT120I GGNCC 6 cut(s) 239, 547, 553, 802, 923, 1720
BmiI GGNNCC 7 cut(s) 270, 384, 548, 721, 804, 833, 924
BmrFI CCNGG 4 cut(s) 148, 420, 551, 1675
BmsI GCATC 1 cut(s) 133
BmtI GCTAGC 1 cut(s) 1002
BpiI GAAGAC 2 cut(s) 421, 1674
BplI GAGNNNNNCTC 4 cut(s) 151, 183, 839, 871
BpmI CTGGAG 1 cut(s) 520
BpuMI CCSGG 1 cut(s) 148
Bsa29I ATCGAT 1 cut(s) 1245
BsaBI GATNNNNATC 1 cut(s) 33
BsaJI CCNNGG 3 cut(s) 418, 556, 938
BsaWI WCCGGW 2 cut(s) 289, 1780
Bsc4I CCNNNNNNNGG 4 cut(s) 231, 524, 543, 1084
Bse1I ACTGG 4 cut(s) 253, 537, 723, 874
Bse8I GATNNNNATC 1 cut(s) 33
BseBI CCWGG 3 cut(s) 420, 551, 1675
BseCI ATCGAT 1 cut(s) 1245
BseDI CCNNGG 3 cut(s) 418, 556, 938
BseGI GGATG 3 cut(s) 370, 610, 1078
BseJI GATNNNNATC 1 cut(s) 33
BseLI CCNNNNNNNGG 4 cut(s) 231, 524, 543, 1084
BseMII CTCAG 4 cut(s) 182, 591, 939, 1103
BseNI ACTGG 4 cut(s) 253, 537, 723, 874
BseXI GCAGC 3 cut(s) 282, 1246, 1619
BseYI CCCAGC 1 cut(s) 1169
BsgI GTGCAG 1 cut(s) 1245
BshFI GGCC 3 cut(s) 241, 925, 1721
BshVI ATCGAT 1 cut(s) 1245
BsiHKAI GWGCWC 1 cut(s) 169
BsiSI CCGG 3 cut(s) 147, 290, 1781
BslFI GGGAC 1 cut(s) 560
BslI CCNNNNNNNGG 4 cut(s) 231, 524, 543, 1084
BsmAI GTCTC 2 cut(s) 1417, 1787
BsmBI CGTCTC 1 cut(s) 1787
BsmFI GGGAC 1 cut(s) 560
BsmI GAATGC 1 cut(s) 1025
BsnI GGCC 3 cut(s) 241, 925, 1721
Bsp1286I GDGCHC 2 cut(s) 169, 355
Bsp143I GATC 7 cut(s) 367, 422, 609, 872, 951, 1013, 1246
BspACI CCGC 2 cut(s) 415, 1826
BspANI GGCC 3 cut(s) 241, 925, 1721
BspCNI CTCAG 4 cut(s) 181, 592, 940, 1102
BspDI ATCGAT 1 cut(s) 1245
BspHI TCATGA 1 cut(s) 1045
BspLI GGNNCC 7 cut(s) 270, 384, 548, 721, 804, 833, 924
BspMI ACCTGC 1 cut(s) 94
BspOI GCTAGC 1 cut(s) 1002
BspPI GGATC 2 cut(s) 430, 880
BsrI ACTGG 4 cut(s) 253, 537, 723, 874
BssECI CCNNGG 3 cut(s) 418, 556, 938
BssMI GATC 7 cut(s) 367, 422, 609, 872, 951, 1013, 1246
BssT1I CCWWGG 1 cut(s) 938
Bst2UI CCWGG 3 cut(s) 420, 551, 1675
Bst4CI ACNGT 6 cut(s) 42, 827, 841, 1289, 1700, 1820
BstAPI GCANNNNNTGC 1 cut(s) 488
BstC8I GCNNGC 1 cut(s) 1000
BstDEI CTNAG 6 cut(s) 168, 470, 600, 948, 1089, 1362
BstEII GGTNACC 1 cut(s) 1802
BstF5I GGATG 3 cut(s) 370, 610, 1078
BstKTI GATC 7 cut(s) 370, 425, 612, 875, 954, 1016, 1249
BstMAI GTCTC 2 cut(s) 1417, 1787
BstMBI GATC 7 cut(s) 367, 422, 609, 872, 951, 1013, 1246
BstMWI GCNNNNNNNGC 2 cut(s) 488, 1004
BstNI CCWGG 3 cut(s) 420, 551, 1675
BstPI GGTNACC 1 cut(s) 1802
BstSCI CCNGG 4 cut(s) 146, 418, 549, 1673
BstV1I GCAGC 3 cut(s) 282, 1246, 1619
BstV2I GAAGAC 2 cut(s) 421, 1674
BstX2I RGATCY 1 cut(s) 422
BstYI RGATCY 1 cut(s) 422
Bsu15I ATCGAT 1 cut(s) 1245
BsuRI GGCC 3 cut(s) 241, 925, 1721
BsuTUI ATCGAT 1 cut(s) 1245
BtgZI GCGATG 1 cut(s) 513
BtsCI GGATG 3 cut(s) 370, 610, 1078
BtsI GCAGTG 2 cut(s) 663, 1221
BtsIMutI CAGTG 3 cut(s) 544, 663, 1221
BveI ACCTGC 1 cut(s) 94
Cac8I GCNNGC 1 cut(s) 1000
CaiI CAGNNNCTG 1 cut(s) 425
CciI TCATGA 1 cut(s) 1045
Cfr13I GGNCC 6 cut(s) 239, 547, 553, 802, 923, 1720
ClaI ATCGAT 1 cut(s) 1245
CseI GACGC 1 cut(s) 449
CsiI ACCWGGT 1 cut(s) 549
Csp6I GTAC 4 cut(s) 196, 1067, 1290, 1696
CviAII CATG 8 cut(s) 248, 265, 310, 356, 653, 736, 892, 1046
CviQI GTAC 4 cut(s) 196, 1067, 1290, 1696
DdeI CTNAG 6 cut(s) 168, 470, 600, 948, 1089, 1362
DpnI GATC 7 cut(s) 369, 424, 611, 874, 953, 1015, 1248
DpnII GATC 7 cut(s) 367, 422, 609, 872, 951, 1013, 1246
DraI TTTAAA 1 cut(s) 390
DriI GACNNNNNGTC 1 cut(s) 459
Eam1105I GACNNNNNGTC 1 cut(s) 459
EciI GGCGGA 1 cut(s) 404
Ecl136II GAGCTC 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 938
Eco24I GRGCYC 2 cut(s) 169, 355
Eco32I GATATC 1 cut(s) 403
Eco47I GGWCC 3 cut(s) 547, 553, 802
Eco53kI GAGCTC 1 cut(s) 167
Eco91I GGTNACC 1 cut(s) 1802
EcoICRI GAGCTC 1 cut(s) 167
EcoO109I RGGNCCY 4 cut(s) 239, 547, 802, 923
EcoO65I GGTNACC 1 cut(s) 1802
EcoRII CCWGG 3 cut(s) 418, 549, 1673
EcoRV GATATC 1 cut(s) 403
EcoT14I CCWWGG 1 cut(s) 938
EcoT38I GRGCYC 2 cut(s) 169, 355
ErhI CCWWGG 1 cut(s) 938
Esp3I CGTCTC 1 cut(s) 1787
FaeI CATG 8 cut(s) 251, 268, 313, 359, 656, 739, 895, 1049
FaqI GGGAC 1 cut(s) 560
FatI CATG 8 cut(s) 247, 264, 309, 355, 652, 735, 891, 1045
FauI CCCGC 1 cut(s) 1819
FbaI TGATCA 2 cut(s) 367, 609
Fnu4HI GCNGC 3 cut(s) 296, 1260, 1608
FokI GGATG 3 cut(s) 377, 617, 1065
FriOI GRGCYC 2 cut(s) 169, 355
Fsp4HI GCNGC 3 cut(s) 296, 1260, 1608
FspBI CTAG 3 cut(s) 999, 1632, 1743
GluI GCNGC 3 cut(s) 296, 1260, 1608
GsaI CCCAGC 1 cut(s) 1173
GsuI CTGGAG 1 cut(s) 520
HaeIII GGCC 3 cut(s) 241, 925, 1721
HapII CCGG 3 cut(s) 147, 290, 1781
HgaI GACGC 1 cut(s) 449
Hin1II CATG 8 cut(s) 251, 268, 313, 359, 656, 739, 895, 1049
HinfI GANTC 5 cut(s) 29, 411, 934, 1109, 1271
HpaII CCGG 3 cut(s) 147, 290, 1781
HphI GGTGA 7 cut(s) 169, 214, 410, 829, 907, 1814, 1832
Hpy166II GTNNAC 2 cut(s) 325, 898
Hpy188I TCNGA 9 cut(s) 171, 189, 307, 441, 465, 557, 601, 1018, 1092
Hpy188III TCNNGA 3 cut(s) 703, 814, 1046
Hpy8I GTNNAC 2 cut(s) 325, 898
HpyCH4III ACNGT 6 cut(s) 42, 827, 841, 1289, 1700, 1820
HpyCH4IV ACGT 2 cut(s) 507, 1810
HpyCH4V TGCA 5 cut(s) 482, 491, 656, 1023, 1262
HpyF10VI GCNNNNNNNGC 2 cut(s) 488, 1004
HpyF3I CTNAG 6 cut(s) 168, 470, 600, 948, 1089, 1362
HpySE526I ACGT 2 cut(s) 507, 1810
Hsp92II CATG 8 cut(s) 251, 268, 313, 359, 656, 739, 895, 1049
Ksp22I TGATCA 2 cut(s) 367, 609
Kzo9I GATC 7 cut(s) 367, 422, 609, 872, 951, 1013, 1246
LmnI GCTCC 7 cut(s) 527, 719, 831, 1396, 1417, 1618, 1786
Lsp1109I GCAGC 3 cut(s) 282, 1246, 1619
LweI GCATC 1 cut(s) 133
MabI ACCWGGT 1 cut(s) 549
MaeI CTAG 3 cut(s) 999, 1632, 1743
MaeII ACGT 2 cut(s) 507, 1810
MaeIII GTNAC 5 cut(s) 220, 821, 963, 1228, 1802
MalI GATC 7 cut(s) 369, 424, 611, 874, 953, 1015, 1248
MboI GATC 7 cut(s) 367, 422, 609, 872, 951, 1013, 1246
MflI RGATCY 1 cut(s) 422
MhlI GDGCHC 2 cut(s) 169, 355
MluCI AATT 9 cut(s) 346, 474, 625, 817, 1027, 1150, 1160, 1332, 1839
MlyI GAGTC 2 cut(s) 405, 1103
MmeI TCCRAC 2 cut(s) 809, 1305
MseI TTAA 3 cut(s) 389, 477, 743
MslI CAYNNNNRTG 1 cut(s) 263
MspI CCGG 3 cut(s) 147, 290, 1781
MspR9I CCNGG 4 cut(s) 148, 420, 551, 1675
Mva1269I GAATGC 1 cut(s) 1025
MvaI CCWGG 3 cut(s) 420, 551, 1675
MwoI GCNNNNNNNGC 2 cut(s) 488, 1004
NciI CCSGG 1 cut(s) 148
NdeII GATC 7 cut(s) 367, 422, 609, 872, 951, 1013, 1246
NheI GCTAGC 1 cut(s) 998
NlaIII CATG 8 cut(s) 251, 268, 313, 359, 656, 739, 895, 1049
NlaIV GGNNCC 7 cut(s) 270, 384, 548, 721, 804, 833, 924
NmuCI GTSAC 2 cut(s) 220, 1802
PagI TCATGA 1 cut(s) 1045
PctI GAATGC 1 cut(s) 1025
PfeI GAWTC 3 cut(s) 29, 934, 1271
PflFI GACNNNGTC 1 cut(s) 551
PflMI CCANNNNNTGG 1 cut(s) 1084
PkrI GCNGC 3 cut(s) 297, 1261, 1609
PleI GAGTC 2 cut(s) 405, 1103
PpsI GAGTC 2 cut(s) 405, 1103
PpuMI RGGWCCY 2 cut(s) 547, 802
PshBI ATTAAT 1 cut(s) 477
Psp124BI GAGCTC 1 cut(s) 169
Psp1406I AACGTT 1 cut(s) 1810
Psp5II RGGWCCY 2 cut(s) 547, 802
Psp6I CCWGG 3 cut(s) 418, 549, 1673
PspEI GGTNACC 1 cut(s) 1802
PspFI CCCAGC 1 cut(s) 1169
PspGI CCWGG 3 cut(s) 418, 549, 1673
PspN4I GGNNCC 7 cut(s) 270, 384, 548, 721, 804, 833, 924
PspPI GGNCC 6 cut(s) 239, 547, 553, 802, 923, 1720
PspPPI RGGWCCY 2 cut(s) 547, 802
PstNI CAGNNNCTG 1 cut(s) 425
PsuI RGATCY 1 cut(s) 422
PsyI GACNNNGTC 1 cut(s) 551
RsaI GTAC 4 cut(s) 197, 1068, 1291, 1697
RsaNI GTAC 4 cut(s) 196, 1067, 1290, 1696
RseI CAYNNNNRTG 1 cut(s) 263
SacI GAGCTC 1 cut(s) 169
SaqAI TTAA 3 cut(s) 389, 477, 743
SatI GCNGC 3 cut(s) 296, 1260, 1608
Sau3AI GATC 7 cut(s) 367, 422, 609, 872, 951, 1013, 1246
Sau96I GGNCC 6 cut(s) 239, 547, 553, 802, 923, 1720
SchI GAGTC 2 cut(s) 405, 1103
ScrFI CCNGG 4 cut(s) 148, 420, 551, 1675
SduI GDGCHC 2 cut(s) 169, 355
SexAI ACCWGGT 1 cut(s) 549
SfaNI GCATC 1 cut(s) 133
SinI GGWCC 3 cut(s) 547, 553, 802
SmiMI CAYNNNNRTG 1 cut(s) 263
Sse9I AATT 9 cut(s) 346, 474, 625, 817, 1027, 1150, 1160, 1332, 1839
SsiI CCGC 2 cut(s) 415, 1826
SspI AATATT 1 cut(s) 790
SspMI CTAG 3 cut(s) 999, 1632, 1743
SstI GAGCTC 1 cut(s) 169
StyD4I CCNGG 4 cut(s) 146, 418, 549, 1673
StyI CCWWGG 1 cut(s) 938
TaaI ACNGT 6 cut(s) 42, 827, 841, 1289, 1700, 1820
TaiI ACGT 2 cut(s) 510, 1813
TaqI TCGA 4 cut(s) 564, 617, 1245, 1284
TaqII GACCGA 2 cut(s) 470, 570
TasI AATT 9 cut(s) 346, 474, 625, 817, 1027, 1150, 1160, 1332, 1839
TatI WGTACW 2 cut(s) 1289, 1695
TfiI GAWTC 3 cut(s) 29, 934, 1271
Tru1I TTAA 3 cut(s) 389, 477, 743
Tru9I TTAA 3 cut(s) 389, 477, 743
TscAI CASTG 3 cut(s) 544, 663, 1221
TseFI GTSAC 2 cut(s) 220, 1802
TseI GCWGC 3 cut(s) 295, 1259, 1607
Tsp45I GTSAC 2 cut(s) 220, 1802
TspDTI ATGAA 6 cut(s) 49, 247, 852, 880, 1034, 1062
TspGWI ACGGA 4 cut(s) 213, 247, 1417, 1811
TspRI CASTG 3 cut(s) 544, 663, 1221
Tth111I GACNNNGTC 1 cut(s) 551
Van91I CCANNNNNTGG 1 cut(s) 1084
VpaK11BI GGWCC 3 cut(s) 547, 553, 802
VspI ATTAAT 1 cut(s) 477
XapI RAATTY 3 cut(s) 625, 1027, 1839
XcmI CCANNNNNNNNNTGG 1 cut(s) 332
XspI CTAG 3 cut(s) 999, 1632, 1743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.