RchiOBHm_Chr2g0103071

STS14 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012124
Physical Location & Seq
Reverse (-)
14718965 .. 14720125
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 522 bp
ATGGGCCAGCATGCGTTGTCTGTACCACTACTAGCAGTGGCTCTAGCCATATGCTACACCCTCATCTCAGCCTCCGCCGCAGAAGCCCCTCTTTCCGCCGCAGCCACCGAGTACCTTCAAGCCCACAACCAAGCCAGAGCCGCCGTCGGCGTCCCACCTCTGAAATGGAGCGAGTCACTTGCCAACGCCACGAGTCGACTCGTCAGGTACCAAAGAGACAAGATGGGGTGCAACTTCGCCAACCTCATCAGCGGCAAGTACGGCTGGAACCAGCTCTGGGCGAGCGGCCAGGTGGTGACGCCGACCATGGTGGTGGACGCGTGGGTGAAGGAGAAGGAGTTCTACAACCACACCGACAACACGTGCGTGCCGAACCACCAGTGCGGCGTCTACACGCAGGTGGTGTGGCGGAAGTCGCTGGAGTTGGGTTGCGCGCAGGCCACGTGTACCAAGGACCAGAGCAGATTGAGCATTTGCTTTTACAATCCTCCTGGGAATTATGTAGGGGAGAGTCCATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAP DUF4228

Protein Analysis

173

Amino Acids

18.93

Weight (kDa)

8.15

Isoelectric Point (pI)

27.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 39 - 158 1.4e-16 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66590
fragaria_vesca FvH4_1g14370
malus_domestica MD02G1157200.v1.1 MD02G1157300.v1.1 MD15G1271900.v1.1
prunus_persica Prupe.7G146300_v2.0.a1
pyrus_communis pycom02g12430 pycom02g12440 pycom15g23580
rosa_chinensis RchiOBHm_Chr2g0103071
rosa_laevigata RLG00000017203
rosa_multiflora Rmu_co8460475.1_g000001 Rmu_sc0000388.1_g000013
rosa_rugosa Rorug02G0111900
rosa_samantha Rh2AG160000 Rh2BG166600 Rh2CG166800 Rh2DG165600
rosa_wichuraiana Rw2G012520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 388
Acc36I ACCTGC 1 cut(s) 388
Acc65I GGTACC 1 cut(s) 207
AccB1I GGYRCC 1 cut(s) 207
AccBSI CCGCTC 1 cut(s) 285
AccI GTMKAC 2 cut(s) 196, 390
AccII CGCG 2 cut(s) 320, 434
AciI CCGC 9 cut(s) 75, 78, 96, 99, 141, 252, 285, 384, 409
AcoI YGGCCR 1 cut(s) 286
AcvI CACGTG 2 cut(s) 363, 444
AcyI GRCGYC 3 cut(s) 150, 299, 387
AfaI GTAC 5 cut(s) 24, 113, 209, 260, 448
AfiI CCNNNNNNNGG 1 cut(s) 277
AflIII ACRYGT 3 cut(s) 318, 360, 443
AgsI TTSAA 1 cut(s) 119
AjnI CCWGG 2 cut(s) 288, 490
AleI CACNNNNGTG 2 cut(s) 365, 398
AloI GAACNNNNNNTCC 2 cut(s) 323, 355
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
Alw26I GTCTC 1 cut(s) 210
AoxI GGCC 3 cut(s) 4, 286, 438
ApeKI GCWGC 1 cut(s) 101
Asp700I GAANNNNTTC 1 cut(s) 338
Asp718I GGTACC 1 cut(s) 207
AspLEI GCGC 2 cut(s) 434, 436
AspS9I GGNCC 2 cut(s) 4, 454
AsuHPI GGTGA 2 cut(s) 307, 337
AvaII GGWCC 1 cut(s) 454
BanI GGYRCC 1 cut(s) 207
BarI GAAGNNNNNNTAC 2 cut(s) 326, 358
BauI CACGAG 1 cut(s) 190
BbrPI CACGTG 2 cut(s) 363, 444
BbvI GCAGC 1 cut(s) 113
BccI CCATC 1 cut(s) 217
BceAI ACGGC 2 cut(s) 128, 277
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciT130I CCWGG 2 cut(s) 290, 492
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 3 cut(s) 32, 44, 520
BfuAI ACCTGC 1 cut(s) 388
BisI GCNGC 7 cut(s) 78, 99, 102, 141, 253, 286, 385
BlsI GCNGC 7 cut(s) 79, 100, 103, 142, 254, 287, 386
Bme1390I CCNGG 2 cut(s) 290, 492
Bme18I GGWCC 1 cut(s) 454
BmgT120I GGNCC 2 cut(s) 4, 454
BmiI GGNNCC 2 cut(s) 209, 269
BmrFI CCNGG 2 cut(s) 290, 492
BpmI CTGGAG 1 cut(s) 440
BsaAI YACGTR 2 cut(s) 363, 444
BsaHI GRCGYC 3 cut(s) 150, 299, 387
BsaJI CCNNGG 3 cut(s) 306, 450, 491
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 379
BseBI CCWGG 2 cut(s) 290, 492
BseDI CCNNGG 3 cut(s) 306, 450, 491
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 379
BsePI GCGCGC 1 cut(s) 432
BseXI GCAGC 1 cut(s) 113
Bsh1236I CGCG 2 cut(s) 320, 434
BshFI GGCC 3 cut(s) 6, 288, 440
BshNI GGYRCC 1 cut(s) 207
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 3 cut(s) 6, 288, 440
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 9 cut(s) 75, 78, 96, 99, 141, 252, 285, 384, 409
BspANI GGCC 3 cut(s) 6, 288, 440
BspCNI CTCAG 1 cut(s) 80
BspFNI CGCG 2 cut(s) 320, 434
BspLI GGNNCC 2 cut(s) 209, 269
BspMI ACCTGC 1 cut(s) 388
BspT107I GGYRCC 1 cut(s) 207
BsrBI CCGCTC 1 cut(s) 285
BsrI ACTGG 1 cut(s) 379
BssECI CCNNGG 3 cut(s) 306, 450, 491
BssHII GCGCGC 1 cut(s) 432
BssNI GRCGYC 3 cut(s) 150, 299, 387
BssSI CACGAG 1 cut(s) 190
BssT1I CCWWGG 2 cut(s) 306, 450
Bst2BI CACGAG 1 cut(s) 190
Bst2UI CCWGG 2 cut(s) 290, 492
BstACI GRCGYC 3 cut(s) 150, 299, 387
BstBAI YACGTR 2 cut(s) 363, 444
BstC8I GCNNGC 6 cut(s) 8, 12, 283, 368, 434, 438
BstDEI CTNAG 1 cut(s) 67
BstDSI CCRYGG 1 cut(s) 306
BstFNI CGCG 2 cut(s) 320, 434
BstHHI GCGC 2 cut(s) 434, 436
BstMAI GTCTC 1 cut(s) 210
BstMWI GCNNNNNNNGC 6 cut(s) 77, 83, 140, 261, 415, 468
BstNI CCWGG 2 cut(s) 290, 492
BstNSI RCATGY 1 cut(s) 14
BstSCI CCNGG 2 cut(s) 288, 490
BstUI CGCG 2 cut(s) 320, 434
BstV1I GCAGC 1 cut(s) 113
BstXI CCANNNNNNTGG 1 cut(s) 313
BsuRI GGCC 3 cut(s) 6, 288, 440
BtgI CCRYGG 1 cut(s) 306
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 42, 386
BveI ACCTGC 1 cut(s) 388
Cac8I GCNNGC 6 cut(s) 8, 12, 283, 368, 434, 438
CfoI GCGC 2 cut(s) 434, 436
Cfr13I GGNCC 2 cut(s) 4, 454
CseI GACGC 4 cut(s) 139, 307, 326, 376
Csp6I GTAC 5 cut(s) 23, 112, 208, 259, 447
CviAII CATG 2 cut(s) 11, 307
CviQI GTAC 5 cut(s) 23, 112, 208, 259, 447
DdeI CTNAG 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 286
EciI GGCGGA 3 cut(s) 64, 85, 424
Eco130I CCWWGG 2 cut(s) 306, 450
Eco47I GGWCC 1 cut(s) 454
Eco72I CACGTG 2 cut(s) 363, 444
EcoRII CCWGG 2 cut(s) 288, 490
EcoT14I CCWWGG 2 cut(s) 306, 450
ErhI CCWWGG 2 cut(s) 306, 450
FaeI CATG 2 cut(s) 14, 310
FaiI YATR 6 cut(s) 12, 50, 52, 308, 501, 517
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FaqI GGGAC 1 cut(s) 137
FatI CATG 2 cut(s) 10, 306
FauNDI CATATG 1 cut(s) 50
FblI GTMKAC 2 cut(s) 196, 390
Fnu4HI GCNGC 7 cut(s) 78, 99, 102, 141, 253, 286, 385
Fsp4HI GCNGC 7 cut(s) 78, 99, 102, 141, 253, 286, 385
FspBI CTAG 3 cut(s) 32, 44, 520
GlaI GCGC 2 cut(s) 433, 435
GluI GCNGC 7 cut(s) 78, 99, 102, 141, 253, 286, 385
GsuI CTGGAG 1 cut(s) 440
HaeIII GGCC 3 cut(s) 6, 288, 440
HgaI GACGC 4 cut(s) 139, 307, 326, 376
HhaI GCGC 2 cut(s) 434, 436
Hin1I GRCGYC 3 cut(s) 150, 299, 387
Hin1II CATG 2 cut(s) 14, 310
Hin6I GCGC 2 cut(s) 432, 434
HinP1I GCGC 2 cut(s) 432, 434
HincII GTYRAC 1 cut(s) 197
HindII GTYRAC 1 cut(s) 197
HinfI GANTC 4 cut(s) 173, 193, 198, 511
HphI GGTGA 2 cut(s) 307, 337
Hpy166II GTNNAC 4 cut(s) 197, 316, 391, 447
Hpy188I TCNGA 1 cut(s) 162
Hpy8I GTNNAC 4 cut(s) 197, 316, 391, 447
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 3 cut(s) 125, 322, 328
HpyCH4IV ACGT 2 cut(s) 362, 443
HpyCH4V TGCA 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 83, 140, 261, 415, 468
HpyF3I CTNAG 1 cut(s) 67
HpySE526I ACGT 2 cut(s) 362, 443
Hsp92I GRCGYC 3 cut(s) 150, 299, 387
Hsp92II CATG 2 cut(s) 14, 310
HspAI GCGC 2 cut(s) 432, 434
KpnI GGTACC 1 cut(s) 211
LmnI GCTCC 1 cut(s) 168
Lsp1109I GCAGC 1 cut(s) 113
MaeI CTAG 3 cut(s) 32, 44, 520
MaeII ACGT 2 cut(s) 362, 443
MaeIII GTNAC 2 cut(s) 174, 295
MbiI CCGCTC 1 cut(s) 285
MluCI AATT 1 cut(s) 496
MluI ACGCGT 1 cut(s) 318
MlyI GAGTC 4 cut(s) 182, 192, 202, 520
MnlI CCTC 6 cut(s) 71, 82, 99, 168, 254, 498
MroXI GAANNNNTTC 1 cut(s) 338
MslI CAYNNNNRTG 3 cut(s) 311, 365, 398
MspA1I CMGCKG 1 cut(s) 252
MspR9I CCNGG 2 cut(s) 290, 492
MvaI CCWGG 2 cut(s) 290, 492
MvnI CGCG 2 cut(s) 320, 434
MwoI GCNNNNNNNGC 6 cut(s) 77, 83, 140, 261, 415, 468
NcoI CCATGG 1 cut(s) 306
NdeI CATATG 1 cut(s) 50
NlaIII CATG 2 cut(s) 14, 310
NlaIV GGNNCC 2 cut(s) 209, 269
NmuCI GTSAC 2 cut(s) 174, 295
NspI RCATGY 1 cut(s) 14
OliI CACNNNNGTG 2 cut(s) 365, 398
PaeI GCATGC 1 cut(s) 14
PaqCI CACCTGC 1 cut(s) 388
PauI GCGCGC 1 cut(s) 432
PcsI WCGNNNNNNNCGW 1 cut(s) 368
PdmI GAANNNNTTC 1 cut(s) 338
PkrI GCNGC 7 cut(s) 79, 100, 103, 142, 254, 287, 386
PleI GAGTC 4 cut(s) 181, 192, 201, 519
PmaCI CACGTG 2 cut(s) 363, 444
PmlI CACGTG 2 cut(s) 363, 444
PpsI GAGTC 4 cut(s) 181, 192, 201, 519
Ppu21I YACGTR 2 cut(s) 363, 444
Psp6I CCWGG 2 cut(s) 288, 490
PspCI CACGTG 2 cut(s) 363, 444
PspGI CCWGG 2 cut(s) 288, 490
PspN4I GGNNCC 2 cut(s) 209, 269
PspPI GGNCC 2 cut(s) 4, 454
PteI GCGCGC 1 cut(s) 432
RsaI GTAC 5 cut(s) 24, 113, 209, 260, 448
RsaNI GTAC 5 cut(s) 23, 112, 208, 259, 447
RseI CAYNNNNRTG 3 cut(s) 311, 365, 398
SalI GTCGAC 1 cut(s) 195
SatI GCNGC 7 cut(s) 78, 99, 102, 141, 253, 286, 385
Sau96I GGNCC 2 cut(s) 4, 454
SchI GAGTC 4 cut(s) 182, 192, 202, 520
ScrFI CCNGG 2 cut(s) 290, 492
SetI ASST 9 cut(s) 117, 160, 209, 246, 276, 294, 365, 402, 446
SinI GGWCC 1 cut(s) 454
SmiMI CAYNNNNRTG 3 cut(s) 311, 365, 398
SphI GCATGC 1 cut(s) 14
Sse9I AATT 1 cut(s) 496
SsiI CCGC 9 cut(s) 75, 78, 96, 99, 141, 252, 285, 384, 409
SspMI CTAG 3 cut(s) 32, 44, 520
StyD4I CCNGG 2 cut(s) 288, 490
StyI CCWWGG 2 cut(s) 306, 450
TaiI ACGT 2 cut(s) 365, 446
TaqI TCGA 1 cut(s) 196
TasI AATT 1 cut(s) 496
TauI GCSGC 6 cut(s) 80, 101, 143, 255, 288, 387
TscAI CASTG 2 cut(s) 42, 386
TseFI GTSAC 2 cut(s) 174, 295
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 2 cut(s) 174, 295
TspRI CASTG 2 cut(s) 42, 386
VpaK11BI GGWCC 1 cut(s) 454
XceI RCATGY 1 cut(s) 14
XcmI CCANNNNNNNNNTGG 1 cut(s) 162
XmiI GTMKAC 2 cut(s) 196, 390
XmnI GAANNNNTTC 1 cut(s) 338
XspI CTAG 3 cut(s) 32, 44, 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.