RchiOBHm_Chr2g0103091

STS14 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011513
Physical Location & Seq
Reverse (-)
14733941 .. 14734669
729 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 603 bp
ATGATGAAGAAAATGGCTCGGGCCTTGGTTGTAGTACTAGCCGTGACTGTAGCCATATGTCTCACTCAGTGTCACGGCTACGGCCTACCCGTTAGACCTCATTATATAAACTTTTACGGATCAGGACCAAGGCTCATCCCCAGAACAAATTTATCCCTGGATTTCCTGGAAAGTCAGAACAAAGCAAGAGCCGCAGTTGGGGTTGCCCCTCTTAAATGGAGCCCTTCCCTGGAAAAGGCCGCACACGACGTAGCATGGTCCATGATCTATAATGAAAAGGGTTGCCATTCTTATTTGGACCCGATGAGCCTCAATCGAACGTTTGACATTGGCGGCTACAACCAGCACTGGGATCGTTATGGAACACTGCCACCGGGCGAGGTTGTGGACAAGTGGTTGCTGATGAAGAAGTACTACAACTACGCCAATAACTCGTGTAGTGTGCGCAACAATAGGTGCGGTTGGTATACGCAGGTGGTGTGGAGGAACTCCTTGGAGTTGGGGTGTGCTCAGGAAAGATGTTTCGAGAACCGGCAAAGTAACGGTATGACTATCTGTCTTTATAGTCCTCGTGGAAATGTTCCAGGGCAGAGACCGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAP

Protein Analysis

200

Amino Acids

22.8

Weight (kDa)

9.3

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 57 - 188 7.5e-16 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 463
Acc16I TGCGCA 1 cut(s) 446
Acc36I ACCTGC 1 cut(s) 463
AccI GTMKAC 1 cut(s) 467
AciI CCGC 4 cut(s) 192, 240, 333, 459
AclI AACGTT 1 cut(s) 320
AclWI GGATC 2 cut(s) 127, 360
AcsI RAATTY 1 cut(s) 148
AdeI CACNNNGTG 1 cut(s) 69
AfaI GTAC 3 cut(s) 36, 413, 599
AfiI CCNNNNNNNGG 4 cut(s) 198, 229, 235, 349
AhdI GACNNNNNGTC 1 cut(s) 555
AjnI CCWGG 4 cut(s) 156, 165, 228, 583
Alw21I GWGCWC 1 cut(s) 511
Alw26I GTCTC 2 cut(s) 65, 586
AlwI GGATC 2 cut(s) 127, 360
Ama87I CYCGRG 1 cut(s) 18
AoxI GGCC 3 cut(s) 21, 82, 237
ApoI RAATTY 1 cut(s) 148
AspLEI GCGC 1 cut(s) 447
AspS9I GGNCC 4 cut(s) 21, 125, 258, 298
AsuC2I CCSGG 1 cut(s) 375
AvaI CYCGRG 1 cut(s) 18
AvaII GGWCC 3 cut(s) 125, 258, 298
BanII GRGCYC 1 cut(s) 224
BarI GAAGNNNNNNTAC 2 cut(s) 398, 430
BauI CACGAG 2 cut(s) 433, 570
Bbv12I GWGCWC 1 cut(s) 511
BceAI ACGGC 3 cut(s) 26, 91, 97
BcgI CGANNNNNNTGC 2 cut(s) 335, 369
BciT130I CCWGG 4 cut(s) 158, 167, 230, 585
BcnI CCSGG 1 cut(s) 375
BcoDI GTCTC 2 cut(s) 65, 586
BfaI CTAG 2 cut(s) 38, 601
BfmI CTRYAG 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 463
BisI GCNGC 3 cut(s) 192, 240, 334
BlsI GCNGC 3 cut(s) 193, 241, 335
BmcAI AGTACT 2 cut(s) 36, 413
Bme1390I CCNGG 5 cut(s) 158, 167, 230, 375, 585
Bme18I GGWCC 3 cut(s) 125, 258, 298
BmeRI GACNNNNNGTC 1 cut(s) 555
BmeT110I CYCGRG 1 cut(s) 18
BmgT120I GGNCC 4 cut(s) 21, 125, 258, 298
BmiI GGNNCC 2 cut(s) 221, 300
BmrFI CCNGG 5 cut(s) 158, 167, 230, 375, 585
BmrI ACTGGG 1 cut(s) 358
BmuI ACTGGG 1 cut(s) 358
Bpu10I CCTNAGC 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 375
BsaI GGTCTC 1 cut(s) 586
BsaJI CCNNGG 6 cut(s) 24, 128, 156, 228, 492, 584
BsaXI ACNNNNNCTCC 2 cut(s) 488, 518
Bsc4I CCNNNNNNNGG 4 cut(s) 198, 229, 235, 349
Bse118I RCCGGY 1 cut(s) 531
Bse1I ACTGG 1 cut(s) 353
BseBI CCWGG 4 cut(s) 158, 167, 230, 585
BseDI CCNNGG 6 cut(s) 24, 128, 156, 228, 492, 584
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 4 cut(s) 198, 229, 235, 349
BseMII CTCAG 2 cut(s) 80, 524
BseNI ACTGG 1 cut(s) 353
BshFI GGCC 3 cut(s) 23, 84, 239
BsiHKAI GWGCWC 1 cut(s) 511
BsiHKCI CYCGRG 1 cut(s) 18
BsiSI CCGG 2 cut(s) 374, 532
BslI CCNNNNNNNGG 4 cut(s) 198, 229, 235, 349
BsmAI GTCTC 2 cut(s) 65, 586
BsnI GGCC 3 cut(s) 23, 84, 239
Bso31I GGTCTC 1 cut(s) 586
BsoBI CYCGRG 1 cut(s) 18
Bsp1286I GDGCHC 2 cut(s) 224, 511
Bsp143I GATC 3 cut(s) 119, 264, 352
BspACI CCGC 4 cut(s) 192, 240, 333, 459
BspANI GGCC 3 cut(s) 23, 84, 239
BspCNI CTCAG 2 cut(s) 79, 523
BspLI GGNNCC 2 cut(s) 221, 300
BspMI ACCTGC 1 cut(s) 463
BspPI GGATC 2 cut(s) 127, 360
BspTNI GGTCTC 1 cut(s) 586
BsrFI RCCGGY 1 cut(s) 531
BsrI ACTGG 1 cut(s) 353
BssAI RCCGGY 1 cut(s) 531
BssECI CCNNGG 6 cut(s) 24, 128, 156, 228, 492, 584
BssMI GATC 3 cut(s) 119, 264, 352
BssNAI GTATAC 1 cut(s) 468
BssSI CACGAG 2 cut(s) 433, 570
BssT1I CCWWGG 3 cut(s) 24, 128, 492
Bst1107I GTATAC 1 cut(s) 468
Bst2BI CACGAG 2 cut(s) 433, 570
Bst2UI CCWGG 4 cut(s) 158, 167, 230, 585
Bst4CI ACNGT 3 cut(s) 49, 545, 597
BstDEI CTNAG 2 cut(s) 66, 510
BstENI CCTNNNNNAGG 1 cut(s) 233
BstF5I GGATG 1 cut(s) 135
BstHHI GCGC 1 cut(s) 447
BstKTI GATC 3 cut(s) 122, 267, 355
BstMAI GTCTC 2 cut(s) 65, 586
BstMBI GATC 3 cut(s) 119, 264, 352
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 4 cut(s) 158, 167, 230, 585
BstSCI CCNGG 5 cut(s) 156, 165, 228, 373, 583
BstSFI CTRYAG 1 cut(s) 48
BstZ17I GTATAC 1 cut(s) 468
BsuRI GGCC 3 cut(s) 23, 84, 239
BtsCI GGATG 1 cut(s) 135
BtsI GCAGTG 1 cut(s) 365
BtsIMutI CAGTG 3 cut(s) 74, 346, 365
BveI ACCTGC 1 cut(s) 463
CfoI GCGC 1 cut(s) 447
Cfr10I RCCGGY 1 cut(s) 531
Cfr13I GGNCC 4 cut(s) 21, 125, 258, 298
Csp6I GTAC 3 cut(s) 35, 412, 598
CviAII CATG 2 cut(s) 255, 262
CviQI GTAC 3 cut(s) 35, 412, 598
DdeI CTNAG 2 cut(s) 66, 510
DpnI GATC 3 cut(s) 121, 266, 354
DpnII GATC 3 cut(s) 119, 264, 352
DraIII CACNNNGTG 1 cut(s) 69
DriI GACNNNNNGTC 1 cut(s) 555
Eam1105I GACNNNNNGTC 1 cut(s) 555
Eco130I CCWWGG 3 cut(s) 24, 128, 492
Eco24I GRGCYC 1 cut(s) 224
Eco31I GGTCTC 1 cut(s) 586
Eco47I GGWCC 3 cut(s) 125, 258, 298
Eco88I CYCGRG 1 cut(s) 18
EcoNI CCTNNNNNAGG 1 cut(s) 233
EcoRII CCWGG 4 cut(s) 156, 165, 228, 583
EcoT14I CCWWGG 3 cut(s) 24, 128, 492
EcoT38I GRGCYC 1 cut(s) 224
ErhI CCWWGG 3 cut(s) 24, 128, 492
FaeI CATG 2 cut(s) 258, 265
FatI CATG 2 cut(s) 254, 261
FauNDI CATATG 1 cut(s) 56
FblI GTMKAC 1 cut(s) 467
Fnu4HI GCNGC 3 cut(s) 192, 240, 334
FokI GGATG 1 cut(s) 122
FriOI GRGCYC 1 cut(s) 224
Fsp4HI GCNGC 3 cut(s) 192, 240, 334
FspBI CTAG 2 cut(s) 38, 601
FspI TGCGCA 1 cut(s) 446
GlaI GCGC 1 cut(s) 446
GluI GCNGC 3 cut(s) 192, 240, 334
HaeIII GGCC 3 cut(s) 23, 84, 239
HapII CCGG 2 cut(s) 374, 532
HhaI GCGC 1 cut(s) 447
Hin1II CATG 2 cut(s) 258, 265
Hin6I GCGC 1 cut(s) 445
HinP1I GCGC 1 cut(s) 445
HpaII CCGG 2 cut(s) 374, 532
Hpy166II GTNNAC 2 cut(s) 388, 468
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 3 cut(s) 123, 512, 526
Hpy8I GTNNAC 2 cut(s) 388, 468
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 1 cut(s) 234
HpyCH4III ACNGT 3 cut(s) 49, 545, 597
HpyCH4IV ACGT 2 cut(s) 249, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 2 cut(s) 66, 510
HpySE526I ACGT 2 cut(s) 249, 320
Hsp92II CATG 2 cut(s) 258, 265
HspAI GCGC 1 cut(s) 445
Kzo9I GATC 3 cut(s) 119, 264, 352
LmnI GCTCC 1 cut(s) 219
MaeI CTAG 2 cut(s) 38, 601
MaeII ACGT 2 cut(s) 249, 320
MaeIII GTNAC 3 cut(s) 43, 71, 539
MalI GATC 3 cut(s) 121, 266, 354
MboI GATC 3 cut(s) 119, 264, 352
MboII GAAGA 2 cut(s) 19, 418
MhlI GDGCHC 2 cut(s) 224, 511
MluCI AATT 1 cut(s) 148
MnlI CCTC 6 cut(s) 108, 219, 320, 373, 477, 579
MseI TTAA 1 cut(s) 213
MspI CCGG 2 cut(s) 374, 532
MspR9I CCNGG 5 cut(s) 158, 167, 230, 375, 585
MvaI CCWGG 4 cut(s) 158, 167, 230, 585
MwoI GCNNNNNNNGC 1 cut(s) 191
NciI CCSGG 1 cut(s) 375
NdeI CATATG 1 cut(s) 56
NdeII GATC 3 cut(s) 119, 264, 352
NlaIII CATG 2 cut(s) 258, 265
NlaIV GGNNCC 2 cut(s) 221, 300
NmuCI GTSAC 2 cut(s) 43, 71
NsbI TGCGCA 1 cut(s) 446
PaqCI CACCTGC 1 cut(s) 463
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfoI TCCNGGA 1 cut(s) 165
PkrI GCNGC 3 cut(s) 193, 241, 335
Psp1406I AACGTT 1 cut(s) 320
Psp6I CCWGG 4 cut(s) 156, 165, 228, 583
PspGI CCWGG 4 cut(s) 156, 165, 228, 583
PspN4I GGNNCC 2 cut(s) 221, 300
PspPI GGNCC 4 cut(s) 21, 125, 258, 298
RsaI GTAC 3 cut(s) 36, 413, 599
RsaNI GTAC 3 cut(s) 35, 412, 598
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 3 cut(s) 192, 240, 334
Sau3AI GATC 3 cut(s) 119, 264, 352
Sau96I GGNCC 4 cut(s) 21, 125, 258, 298
ScaI AGTACT 2 cut(s) 36, 413
ScrFI CCNGG 5 cut(s) 158, 167, 230, 375, 585
SduI GDGCHC 2 cut(s) 224, 511
SetI ASST 6 cut(s) 100, 252, 323, 384, 458, 477
SfcI CTRYAG 1 cut(s) 48
SinI GGWCC 3 cut(s) 125, 258, 298
Sse9I AATT 1 cut(s) 148
SsiI CCGC 4 cut(s) 192, 240, 333, 459
SspMI CTAG 2 cut(s) 38, 601
StyD4I CCNGG 5 cut(s) 156, 165, 228, 373, 583
StyI CCWWGG 3 cut(s) 24, 128, 492
TaaI ACNGT 3 cut(s) 49, 545, 597
TaiI ACGT 2 cut(s) 252, 323
TaqI TCGA 2 cut(s) 316, 525
TasI AATT 1 cut(s) 148
TatI WGTACW 2 cut(s) 34, 411
TauI GCSGC 3 cut(s) 194, 242, 336
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 3 cut(s) 74, 353, 372
TseFI GTSAC 2 cut(s) 43, 71
Tsp45I GTSAC 2 cut(s) 43, 71
TspDTI ATGAA 3 cut(s) 20, 288, 419
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 3 cut(s) 74, 353, 372
VpaK11BI GGWCC 3 cut(s) 125, 258, 298
XagI CCTNNNNNAGG 1 cut(s) 233
XapI RAATTY 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 467
XspI CTAG 2 cut(s) 38, 601
ZrmI AGTACT 2 cut(s) 36, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.