Rh2BG166700

STS14 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0011513
Physical Location & Seq
Reverse (-)
14704554 .. 14709725
5172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG166700.1

Sequence Viewer

Length: 792 bp
ATGATGATGAAAATGGATCGGGCCTTGGTTGTAGTAGTAGCCGTGACTGTAGCCGTATGTCTCACGCAGTGTCACGGCTTAGCCATTAAACCTCGTTATATATTTGATGGAATGCCAAAATTAATCATCCAAAGAAAAAATTTTACCCCGGAATTCCTGGAAACTCACAACAAAGCAAGAGCCGCAGTTGGGGTTGCCCCTCTTAAATGGAGCCCTTCCCTGGAAAAGGCCGCAAGCGACGTAGCATGGTCCATGATCAATAACGAAAAGGGTTGCCATTCTTTGGACCCGAGGAGCCTCAATCGAACGTATGACATTGGCAGCTTCAACCTGCACTGGGATCGTTATAGTAGACCATCGCCGCGCGAGGTTGTAGACAAGTGGGTGGCGGAGAAGAAGTACTACAACCACGACAAAAACTCGTGTGTGCGCAACAGTAAGTGCGGTTCGTATACGCAGGTGGTGTGGAGGAATTCCTTGGAGTTGGGGTGTGCTCAGCAAAGATGTCACAAGTGGCTGCAAAGCAATGGTATAACTCTCTGTCTTTATAGTCCTCCTGGAAATGTTCCAGGGCAGAGACCGCTAGAAGCAGCATACTCGTTAACAGAGTATGGACGGAAAACCCGAGTACGAAGCGCCAGTCGGGTAGGGCTATGGCCAGAAGCCAAAGTTACTGAGAGGATGGGAGTGCTGGATAAGGCCACGAGCCACCGAGGAAGCTATAGGAGGCCCGGCTATGGGAAAGGGACCCGAGTTTATGGTGATGAACCGCCAAGGAGGAAAGTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAP

Protein Analysis

263

Amino Acids

29.92

Weight (kDa)

9.9

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 53 - 181 4.9e-19 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 448
Acc16I TGCGCA 1 cut(s) 431
Acc36I ACCTGC 2 cut(s) 339, 448
AccB7I CCANNNNNTGG 1 cut(s) 283
AccI GTMKAC 3 cut(s) 352, 375, 452
AccII CGCG 2 cut(s) 364, 366
AciI CCGC 7 cut(s) 183, 231, 362, 389, 444, 581, 770
AclWI GGATC 2 cut(s) 24, 348
AcoI YGGCCR 1 cut(s) 656
AcsI RAATTY 3 cut(s) 139, 152, 472
AdeI CACNNNGTG 1 cut(s) 69
AfaI GTAC 2 cut(s) 401, 630
AfiI CCNNNNNNNGG 7 cut(s) 189, 220, 226, 283, 337, 737, 738
AgsI TTSAA 1 cut(s) 328
AjnI CCWGG 4 cut(s) 156, 219, 556, 568
AluBI AGCT 2 cut(s) 324, 720
AluI AGCT 2 cut(s) 324, 720
Alw21I GWGCWC 1 cut(s) 496
Alw26I GTCTC 2 cut(s) 65, 571
AlwI GGATC 2 cut(s) 24, 348
Ama87I CYCGRG 3 cut(s) 289, 624, 750
AoxI GGCC 5 cut(s) 21, 228, 656, 699, 728
ApeKI GCWGC 3 cut(s) 321, 517, 590
ApoI RAATTY 3 cut(s) 139, 152, 472
ArsI GACNNNNNNTTYG 2 cut(s) 625, 657
AseI ATTAAT 1 cut(s) 122
AspLEI GCGC 3 cut(s) 366, 432, 638
AspS9I GGNCC 5 cut(s) 21, 249, 286, 729, 747
AsuC2I CCSGG 2 cut(s) 149, 732
AsuHPI GGTGA 1 cut(s) 773
AvaI CYCGRG 3 cut(s) 289, 624, 750
AvaII GGWCC 3 cut(s) 249, 286, 747
BalI TGGCCA 1 cut(s) 658
BanII GRGCYC 1 cut(s) 215
BarI GAAGNNNNNNTAC 2 cut(s) 386, 418
BauI CACGAG 2 cut(s) 421, 703
Bbv12I GWGCWC 1 cut(s) 496
BbvI GCAGC 3 cut(s) 333, 504, 602
BccI CCATC 3 cut(s) 101, 364, 676
BceAI ACGGC 3 cut(s) 26, 38, 91
BcgI CGANNNNNNTGC 4 cut(s) 323, 357, 579, 613
BciT130I CCWGG 4 cut(s) 158, 221, 558, 570
BclI TGATCA 1 cut(s) 255
BcnI CCSGG 2 cut(s) 149, 732
BcoDI GTCTC 2 cut(s) 65, 571
BfaI CTAG 1 cut(s) 584
BfmI CTRYAG 2 cut(s) 48, 721
BfoI RGCGCY 1 cut(s) 639
BfuAI ACCTGC 2 cut(s) 339, 448
BisI GCNGC 6 cut(s) 183, 231, 322, 362, 518, 591
BlpI GCTNAGC 2 cut(s) 79, 495
BlsI GCNGC 6 cut(s) 184, 232, 323, 363, 519, 592
BmcAI AGTACT 1 cut(s) 401
Bme1390I CCNGG 6 cut(s) 149, 158, 221, 558, 570, 732
Bme18I GGWCC 3 cut(s) 249, 286, 747
BmeT110I CYCGRG 3 cut(s) 289, 624, 750
BmgT120I GGNCC 5 cut(s) 21, 249, 286, 729, 747
BmiI GGNNCC 5 cut(s) 212, 288, 296, 748, 749
BmrFI CCNGG 6 cut(s) 149, 158, 221, 558, 570, 732
BmrI ACTGGG 1 cut(s) 346
BmuI ACTGGG 1 cut(s) 346
Bpu1102I GCTNAGC 2 cut(s) 79, 495
BpuMI CCSGG 2 cut(s) 149, 732
BsaI GGTCTC 1 cut(s) 571
BsaJI CCNNGG 8 cut(s) 24, 147, 219, 290, 477, 569, 712, 773
BsaXI ACNNNNNCTCC 4 cut(s) 383, 413, 473, 503
Bsc4I CCNNNNNNNGG 7 cut(s) 189, 220, 226, 283, 337, 737, 738
Bse1I ACTGG 2 cut(s) 341, 639
Bse3DI GCAATG 1 cut(s) 532
BseBI CCWGG 4 cut(s) 158, 221, 558, 570
BseDI CCNNGG 8 cut(s) 24, 147, 219, 290, 477, 569, 712, 773
BseGI GGATG 2 cut(s) 126, 687
BseLI CCNNNNNNNGG 7 cut(s) 189, 220, 226, 283, 337, 737, 738
BseMI GCAATG 1 cut(s) 532
BseMII CTCAG 2 cut(s) 509, 666
BseNI ACTGG 2 cut(s) 341, 639
BseRI GAGGAG 1 cut(s) 307
BseXI GCAGC 3 cut(s) 333, 504, 602
BsgI GTGCAG 1 cut(s) 317
Bsh1236I CGCG 2 cut(s) 364, 366
BshFI GGCC 5 cut(s) 23, 230, 658, 701, 730
BsiHKAI GWGCWC 1 cut(s) 496
BsiHKCI CYCGRG 3 cut(s) 289, 624, 750
BsiSI CCGG 2 cut(s) 149, 732
BslFI GGGAC 1 cut(s) 760
BslI CCNNNNNNNGG 7 cut(s) 189, 220, 226, 283, 337, 737, 738
BsmAI GTCTC 2 cut(s) 65, 571
BsmFI GGGAC 1 cut(s) 760
BsmI GAATGC 1 cut(s) 117
BsnI GGCC 5 cut(s) 23, 230, 658, 701, 730
Bso31I GGTCTC 1 cut(s) 571
BsoBI CYCGRG 3 cut(s) 289, 624, 750
Bsp1286I GDGCHC 2 cut(s) 215, 496
Bsp143I GATC 3 cut(s) 16, 255, 340
Bsp1720I GCTNAGC 2 cut(s) 79, 495
BspACI CCGC 7 cut(s) 183, 231, 362, 389, 444, 581, 770
BspANI GGCC 5 cut(s) 23, 230, 658, 701, 730
BspCNI CTCAG 2 cut(s) 508, 667
BspFNI CGCG 2 cut(s) 364, 366
BspLI GGNNCC 5 cut(s) 212, 288, 296, 748, 749
BspMI ACCTGC 2 cut(s) 339, 448
BspPI GGATC 2 cut(s) 24, 348
BspTNI GGTCTC 1 cut(s) 571
BsrDI GCAATG 1 cut(s) 532
BsrI ACTGG 2 cut(s) 341, 639
BssECI CCNNGG 8 cut(s) 24, 147, 219, 290, 477, 569, 712, 773
BssMI GATC 3 cut(s) 16, 255, 340
BssNAI GTATAC 1 cut(s) 453
BssSI CACGAG 2 cut(s) 421, 703
BssT1I CCWWGG 3 cut(s) 24, 477, 773
Bst1107I GTATAC 1 cut(s) 453
Bst2BI CACGAG 2 cut(s) 421, 703
Bst2UI CCWGG 4 cut(s) 158, 221, 558, 570
Bst4CI ACNGT 2 cut(s) 49, 437
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 3 cut(s) 79, 495, 675
BstENI CCTNNNNNAGG 1 cut(s) 224
BstF5I GGATG 2 cut(s) 126, 687
BstFNI CGCG 2 cut(s) 364, 366
BstH2I RGCGCY 1 cut(s) 639
BstHHI GCGC 3 cut(s) 366, 432, 638
BstKTI GATC 3 cut(s) 19, 258, 343
BstMAI GTCTC 2 cut(s) 65, 571
BstMBI GATC 3 cut(s) 16, 255, 340
BstMWI GCNNNNNNNGC 2 cut(s) 182, 580
BstNI CCWGG 4 cut(s) 158, 221, 558, 570
BstSCI CCNGG 6 cut(s) 147, 156, 219, 556, 568, 730
BstSFI CTRYAG 2 cut(s) 48, 721
BstUI CGCG 2 cut(s) 364, 366
BstV1I GCAGC 3 cut(s) 333, 504, 602
BstZ17I GTATAC 1 cut(s) 453
BsuRI GGCC 5 cut(s) 23, 230, 658, 701, 730
BtgZI GCGATG 1 cut(s) 342
BtsCI GGATG 2 cut(s) 126, 687
BtsI GCAGTG 1 cut(s) 74
BtsIMutI CAGTG 2 cut(s) 74, 334
BveI ACCTGC 2 cut(s) 339, 448
Cac8I GCNNGC 1 cut(s) 235
CfoI GCGC 3 cut(s) 366, 432, 638
Cfr13I GGNCC 5 cut(s) 21, 249, 286, 729, 747
Csp6I GTAC 2 cut(s) 400, 629
CviAII CATG 2 cut(s) 246, 253
CviQI GTAC 2 cut(s) 400, 629
DdeI CTNAG 3 cut(s) 79, 495, 675
DpnI GATC 3 cut(s) 18, 257, 342
DpnII GATC 3 cut(s) 16, 255, 340
DraIII CACNNNGTG 1 cut(s) 69
EaeI YGGCCR 1 cut(s) 656
EciI GGCGGA 1 cut(s) 404
Eco130I CCWWGG 3 cut(s) 24, 477, 773
Eco24I GRGCYC 1 cut(s) 215
Eco31I GGTCTC 1 cut(s) 571
Eco47I GGWCC 3 cut(s) 249, 286, 747
Eco88I CYCGRG 3 cut(s) 289, 624, 750
EcoNI CCTNNNNNAGG 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 747
EcoRI GAATTC 2 cut(s) 152, 472
EcoRII CCWGG 4 cut(s) 156, 219, 556, 568
EcoT14I CCWWGG 3 cut(s) 24, 477, 773
EcoT38I GRGCYC 1 cut(s) 215
ErhI CCWWGG 3 cut(s) 24, 477, 773
FaeI CATG 2 cut(s) 249, 256
FaqI GGGAC 1 cut(s) 760
FatI CATG 2 cut(s) 245, 252
FbaI TGATCA 1 cut(s) 255
FblI GTMKAC 3 cut(s) 352, 375, 452
Fnu4HI GCNGC 6 cut(s) 183, 231, 322, 362, 518, 591
FokI GGATG 2 cut(s) 113, 694
FriOI GRGCYC 1 cut(s) 215
Fsp4HI GCNGC 6 cut(s) 183, 231, 322, 362, 518, 591
FspBI CTAG 1 cut(s) 584
FspI TGCGCA 1 cut(s) 431
GlaI GCGC 3 cut(s) 365, 431, 637
GluI GCNGC 6 cut(s) 183, 231, 322, 362, 518, 591
HaeII RGCGCY 1 cut(s) 639
HaeIII GGCC 5 cut(s) 23, 230, 658, 701, 730
HapII CCGG 2 cut(s) 149, 732
HhaI GCGC 3 cut(s) 366, 432, 638
Hin1II CATG 2 cut(s) 249, 256
Hin6I GCGC 3 cut(s) 364, 430, 636
HinP1I GCGC 3 cut(s) 364, 430, 636
HincII GTYRAC 1 cut(s) 603
HindII GTYRAC 1 cut(s) 603
HpaI GTTAAC 1 cut(s) 603
HpaII CCGG 2 cut(s) 149, 732
HphI GGTGA 1 cut(s) 773
Hpy166II GTNNAC 4 cut(s) 353, 376, 453, 603
Hpy8I GTNNAC 4 cut(s) 353, 376, 453, 603
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 225
HpyCH4III ACNGT 2 cut(s) 49, 437
HpyCH4IV ACGT 2 cut(s) 240, 308
HpyCH4V TGCA 2 cut(s) 334, 520
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 580
HpyF3I CTNAG 3 cut(s) 79, 495, 675
HpySE526I ACGT 2 cut(s) 240, 308
Hsp92II CATG 2 cut(s) 249, 256
HspAI GCGC 3 cut(s) 364, 430, 636
KflI GGGWCCC 1 cut(s) 747
Ksp22I TGATCA 1 cut(s) 255
KspAI GTTAAC 1 cut(s) 603
Kzo9I GATC 3 cut(s) 16, 255, 340
LmnI GCTCC 2 cut(s) 210, 294
Lsp1109I GCAGC 3 cut(s) 333, 504, 602
MaeI CTAG 1 cut(s) 584
MaeII ACGT 2 cut(s) 240, 308
MaeIII GTNAC 4 cut(s) 43, 71, 506, 670
MalI GATC 3 cut(s) 18, 257, 342
MboI GATC 3 cut(s) 16, 255, 340
MboII GAAGA 1 cut(s) 406
MhlI GDGCHC 2 cut(s) 215, 496
MlsI TGGCCA 1 cut(s) 658
MluCI AATT 4 cut(s) 119, 139, 152, 472
MluNI TGGCCA 1 cut(s) 658
Mox20I TGGCCA 1 cut(s) 658
MscI TGGCCA 1 cut(s) 658
MseI TTAA 4 cut(s) 87, 122, 204, 602
Msp20I TGGCCA 1 cut(s) 658
MspI CCGG 2 cut(s) 149, 732
MspR9I CCNGG 6 cut(s) 149, 158, 221, 558, 570, 732
Mva1269I GAATGC 1 cut(s) 117
MvaI CCWGG 4 cut(s) 158, 221, 558, 570
MvnI CGCG 2 cut(s) 364, 366
MwoI GCNNNNNNNGC 2 cut(s) 182, 580
NciI CCSGG 2 cut(s) 149, 732
NdeII GATC 3 cut(s) 16, 255, 340
NlaIII CATG 2 cut(s) 249, 256
NlaIV GGNNCC 5 cut(s) 212, 288, 296, 748, 749
NmuCI GTSAC 3 cut(s) 43, 71, 506
NsbI TGCGCA 1 cut(s) 431
PaqCI CACCTGC 1 cut(s) 448
PcsI WCGNNNNNNNCGW 1 cut(s) 622
PctI GAATGC 1 cut(s) 117
PflMI CCANNNNNTGG 1 cut(s) 283
PfoI TCCNGGA 2 cut(s) 156, 556
PkrI GCNGC 6 cut(s) 184, 232, 323, 363, 519, 592
PpuMI RGGWCCY 1 cut(s) 747
PshBI ATTAAT 1 cut(s) 122
Psp5II RGGWCCY 1 cut(s) 747
Psp6I CCWGG 4 cut(s) 156, 219, 556, 568
PspGI CCWGG 4 cut(s) 156, 219, 556, 568
PspN4I GGNNCC 5 cut(s) 212, 288, 296, 748, 749
PspPI GGNCC 5 cut(s) 21, 249, 286, 729, 747
PspPPI RGGWCCY 1 cut(s) 747
PsrI GAACNNNNNNTAC 2 cut(s) 430, 462
RsaI GTAC 2 cut(s) 401, 630
RsaNI GTAC 2 cut(s) 400, 629
SaqAI TTAA 4 cut(s) 87, 122, 204, 602
SatI GCNGC 6 cut(s) 183, 231, 322, 362, 518, 591
Sau3AI GATC 3 cut(s) 16, 255, 340
Sau96I GGNCC 5 cut(s) 21, 249, 286, 729, 747
ScaI AGTACT 1 cut(s) 401
ScrFI CCNGG 6 cut(s) 149, 158, 221, 558, 570, 732
SduI GDGCHC 2 cut(s) 215, 496
SetI ASST 9 cut(s) 94, 243, 311, 326, 333, 372, 462, 722, 791
SfcI CTRYAG 2 cut(s) 48, 721
SinI GGWCC 3 cut(s) 249, 286, 747
Sse9I AATT 4 cut(s) 119, 139, 152, 472
SsiI CCGC 7 cut(s) 183, 231, 362, 389, 444, 581, 770
SspMI CTAG 1 cut(s) 584
StyD4I CCNGG 6 cut(s) 147, 156, 219, 556, 568, 730
StyI CCWWGG 3 cut(s) 24, 477, 773
TaaI ACNGT 2 cut(s) 49, 437
TaiI ACGT 2 cut(s) 243, 311
TaqI TCGA 1 cut(s) 304
TasI AATT 4 cut(s) 119, 139, 152, 472
TatI WGTACW 1 cut(s) 399
TauI GCSGC 3 cut(s) 185, 233, 364
Tru1I TTAA 4 cut(s) 87, 122, 204, 602
Tru9I TTAA 4 cut(s) 87, 122, 204, 602
TscAI CASTG 2 cut(s) 74, 341
TseFI GTSAC 3 cut(s) 43, 71, 506
TseI GCWGC 3 cut(s) 321, 517, 590
Tsp45I GTSAC 3 cut(s) 43, 71, 506
TspDTI ATGAA 2 cut(s) 23, 780
TspGWI ACGGA 1 cut(s) 631
TspRI CASTG 2 cut(s) 74, 341
Van91I CCANNNNNTGG 1 cut(s) 283
VpaK11BI GGWCC 3 cut(s) 249, 286, 747
VspI ATTAAT 1 cut(s) 122
XagI CCTNNNNNAGG 1 cut(s) 224
XapI RAATTY 3 cut(s) 139, 152, 472
XmiI GTMKAC 3 cut(s) 352, 375, 452
XspI CTAG 1 cut(s) 584
ZrmI AGTACT 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.