RchiOBHm_Chr2g0103081

STS14 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011513
Physical Location & Seq
Reverse (-)
14728084 .. 14728797
714 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47747

Sequence Viewer

Length: 573 bp
ATGATGAAAATGGATCGGGCCTTGGTTGTAGTAGTAGCCGTATGTCTCACGCAGTGTCACGGCTTAGCCAGTAAACCTCGTTATTTATTTTATGGAATGTCAAAATTAATCATCCAAAGAAAAAATTTTACCCCGGAATTCCTGGAAACTCACAACAAAGCAAGAGCCGCAGTTGGGGTTGCCCCTCTTAAATGGAGCCCTTCCCTGGAAAAGGCCGCAAGCGACGTAGCATGGTCCATGATCAATAACGAAAAGGGTTGCCATTCTTTGGACCCGAGGAGCCTCAATCGAACGTATGACATTGGCAGCTTCAACCTGTACTGGGATCGTTATAGAAGACCGTCGCCGCGCGAGGTTGTAGACAAGTGGGTGGCGGAGAAGAAGTACTACAACCACGACAAAAACTCGTGTGTGCGCAACAGTAAGTGCGGTTCGTATACGCAGGTGGTGTGGAGGAATTCCTTGGAGTTGGGGTGTGCTCAGCAAAGATGTCACAAGTGGCTGCAAAGTAACGGTATAACTCTCTGTCTTTATAGTCCTCCTGGAAATGTTCCAGGGCAGAGACCGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAP

Protein Analysis

190

Amino Acids

21.82

Weight (kDa)

9.6

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 48 - 176 2.8e-19 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 433
Acc16I TGCGCA 1 cut(s) 416
Acc36I ACCTGC 1 cut(s) 433
AccB7I CCANNNNNTGG 1 cut(s) 268
AccI GTMKAC 2 cut(s) 360, 437
AccII CGCG 2 cut(s) 349, 351
AciI CCGC 5 cut(s) 168, 216, 347, 374, 429
AclWI GGATC 2 cut(s) 21, 333
AcsI RAATTY 3 cut(s) 124, 137, 457
AdeI CACNNNGTG 1 cut(s) 54
AfaI GTAC 2 cut(s) 320, 386
AfiI CCNNNNNNNGG 5 cut(s) 174, 205, 211, 268, 322
AgsI TTSAA 1 cut(s) 313
AjnI CCWGG 4 cut(s) 141, 204, 541, 553
AluBI AGCT 1 cut(s) 309
AluI AGCT 1 cut(s) 309
Alw21I GWGCWC 1 cut(s) 481
Alw26I GTCTC 2 cut(s) 50, 556
AlwI GGATC 2 cut(s) 21, 333
Ama87I CYCGRG 1 cut(s) 274
AoxI GGCC 2 cut(s) 18, 213
ApeKI GCWGC 2 cut(s) 306, 502
ApoI RAATTY 3 cut(s) 124, 137, 457
AseI ATTAAT 1 cut(s) 107
AspLEI GCGC 2 cut(s) 351, 417
AspS9I GGNCC 3 cut(s) 18, 234, 271
AsuC2I CCSGG 1 cut(s) 134
AvaI CYCGRG 1 cut(s) 274
AvaII GGWCC 2 cut(s) 234, 271
BanII GRGCYC 1 cut(s) 200
BarI GAAGNNNNNNTAC 2 cut(s) 371, 403
BauI CACGAG 1 cut(s) 406
BbsI GAAGAC 1 cut(s) 343
Bbv12I GWGCWC 1 cut(s) 481
BbvI GCAGC 2 cut(s) 318, 489
BceAI ACGGC 2 cut(s) 23, 76
BciT130I CCWGG 4 cut(s) 143, 206, 543, 555
BclI TGATCA 1 cut(s) 240
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 2 cut(s) 50, 556
BfaI CTAG 1 cut(s) 571
BfuAI ACCTGC 1 cut(s) 433
BisI GCNGC 5 cut(s) 168, 216, 307, 347, 503
BlpI GCTNAGC 2 cut(s) 64, 480
BlsI GCNGC 5 cut(s) 169, 217, 308, 348, 504
BmcAI AGTACT 1 cut(s) 386
Bme1390I CCNGG 5 cut(s) 134, 143, 206, 543, 555
Bme18I GGWCC 2 cut(s) 234, 271
BmeT110I CYCGRG 1 cut(s) 274
BmgT120I GGNCC 3 cut(s) 18, 234, 271
BmiI GGNNCC 3 cut(s) 197, 273, 281
BmrFI CCNGG 5 cut(s) 134, 143, 206, 543, 555
BmrI ACTGGG 1 cut(s) 331
BmuI ACTGGG 1 cut(s) 331
BpiI GAAGAC 1 cut(s) 343
Bpu1102I GCTNAGC 2 cut(s) 64, 480
BpuMI CCSGG 1 cut(s) 134
BsaI GGTCTC 1 cut(s) 556
BsaJI CCNNGG 6 cut(s) 21, 132, 204, 275, 462, 554
BsaXI ACNNNNNCTCC 4 cut(s) 368, 398, 458, 488
Bsc4I CCNNNNNNNGG 5 cut(s) 174, 205, 211, 268, 322
Bse1I ACTGG 2 cut(s) 69, 326
BseBI CCWGG 4 cut(s) 143, 206, 543, 555
BseDI CCNNGG 6 cut(s) 21, 132, 204, 275, 462, 554
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 5 cut(s) 174, 205, 211, 268, 322
BseMII CTCAG 1 cut(s) 494
BseNI ACTGG 2 cut(s) 69, 326
BseRI GAGGAG 1 cut(s) 292
BseXI GCAGC 2 cut(s) 318, 489
Bsh1236I CGCG 2 cut(s) 349, 351
BshFI GGCC 2 cut(s) 20, 215
BsiHKAI GWGCWC 1 cut(s) 481
BsiHKCI CYCGRG 1 cut(s) 274
BsiSI CCGG 1 cut(s) 134
BslI CCNNNNNNNGG 5 cut(s) 174, 205, 211, 268, 322
BsmAI GTCTC 2 cut(s) 50, 556
BsnI GGCC 2 cut(s) 20, 215
Bso31I GGTCTC 1 cut(s) 556
BsoBI CYCGRG 1 cut(s) 274
Bsp1286I GDGCHC 2 cut(s) 200, 481
Bsp143I GATC 3 cut(s) 13, 240, 325
Bsp1720I GCTNAGC 2 cut(s) 64, 480
BspACI CCGC 5 cut(s) 168, 216, 347, 374, 429
BspANI GGCC 2 cut(s) 20, 215
BspCNI CTCAG 1 cut(s) 493
BspFNI CGCG 2 cut(s) 349, 351
BspLI GGNNCC 3 cut(s) 197, 273, 281
BspMI ACCTGC 1 cut(s) 433
BspPI GGATC 2 cut(s) 21, 333
BspTNI GGTCTC 1 cut(s) 556
BsrI ACTGG 2 cut(s) 69, 326
BssECI CCNNGG 6 cut(s) 21, 132, 204, 275, 462, 554
BssMI GATC 3 cut(s) 13, 240, 325
BssNAI GTATAC 1 cut(s) 438
BssSI CACGAG 1 cut(s) 406
BssT1I CCWWGG 2 cut(s) 21, 462
Bst1107I GTATAC 1 cut(s) 438
Bst2BI CACGAG 1 cut(s) 406
Bst2UI CCWGG 4 cut(s) 143, 206, 543, 555
Bst4CI ACNGT 4 cut(s) 342, 422, 515, 567
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 2 cut(s) 64, 480
BstENI CCTNNNNNAGG 1 cut(s) 209
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 2 cut(s) 349, 351
BstHHI GCGC 2 cut(s) 351, 417
BstKTI GATC 3 cut(s) 16, 243, 328
BstMAI GTCTC 2 cut(s) 50, 556
BstMBI GATC 3 cut(s) 13, 240, 325
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 4 cut(s) 143, 206, 543, 555
BstSCI CCNGG 5 cut(s) 132, 141, 204, 541, 553
BstUI CGCG 2 cut(s) 349, 351
BstV1I GCAGC 2 cut(s) 318, 489
BstV2I GAAGAC 1 cut(s) 343
BstZ17I GTATAC 1 cut(s) 438
BsuRI GGCC 2 cut(s) 20, 215
BtsCI GGATG 1 cut(s) 111
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 59
BveI ACCTGC 1 cut(s) 433
Cac8I GCNNGC 1 cut(s) 220
CfoI GCGC 2 cut(s) 351, 417
Cfr13I GGNCC 3 cut(s) 18, 234, 271
Csp6I GTAC 2 cut(s) 319, 385
CviAII CATG 2 cut(s) 231, 238
CviQI GTAC 2 cut(s) 319, 385
DdeI CTNAG 2 cut(s) 64, 480
DpnI GATC 3 cut(s) 15, 242, 327
DpnII GATC 3 cut(s) 13, 240, 325
DraIII CACNNNGTG 1 cut(s) 54
EciI GGCGGA 1 cut(s) 389
Eco130I CCWWGG 2 cut(s) 21, 462
Eco24I GRGCYC 1 cut(s) 200
Eco31I GGTCTC 1 cut(s) 556
Eco47I GGWCC 2 cut(s) 234, 271
Eco88I CYCGRG 1 cut(s) 274
EcoNI CCTNNNNNAGG 1 cut(s) 209
EcoRI GAATTC 2 cut(s) 137, 457
EcoRII CCWGG 4 cut(s) 141, 204, 541, 553
EcoT14I CCWWGG 2 cut(s) 21, 462
EcoT38I GRGCYC 1 cut(s) 200
ErhI CCWWGG 2 cut(s) 21, 462
FaeI CATG 2 cut(s) 234, 241
FaiI YATR 9 cut(s) 43, 93, 232, 239, 297, 333, 438, 518, 534
FatI CATG 2 cut(s) 230, 237
FbaI TGATCA 1 cut(s) 240
FblI GTMKAC 2 cut(s) 360, 437
Fnu4HI GCNGC 5 cut(s) 168, 216, 307, 347, 503
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 5 cut(s) 168, 216, 307, 347, 503
FspBI CTAG 1 cut(s) 571
FspI TGCGCA 1 cut(s) 416
GlaI GCGC 2 cut(s) 350, 416
GluI GCNGC 5 cut(s) 168, 216, 307, 347, 503
HaeIII GGCC 2 cut(s) 20, 215
HapII CCGG 1 cut(s) 134
HhaI GCGC 2 cut(s) 351, 417
Hin1II CATG 2 cut(s) 234, 241
Hin6I GCGC 2 cut(s) 349, 415
HinP1I GCGC 2 cut(s) 349, 415
HpaII CCGG 1 cut(s) 134
Hpy166II GTNNAC 3 cut(s) 74, 361, 438
Hpy8I GTNNAC 3 cut(s) 74, 361, 438
Hpy99I CGWCG 2 cut(s) 227, 346
HpyAV CCTTC 1 cut(s) 210
HpyCH4III ACNGT 4 cut(s) 342, 422, 515, 567
HpyCH4IV ACGT 2 cut(s) 225, 293
HpyCH4V TGCA 1 cut(s) 505
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 2 cut(s) 64, 480
HpySE526I ACGT 2 cut(s) 225, 293
Hsp92II CATG 2 cut(s) 234, 241
HspAI GCGC 2 cut(s) 349, 415
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 3 cut(s) 13, 240, 325
LmnI GCTCC 2 cut(s) 195, 279
Lsp1109I GCAGC 2 cut(s) 318, 489
MaeI CTAG 1 cut(s) 571
MaeII ACGT 2 cut(s) 225, 293
MaeIII GTNAC 3 cut(s) 56, 491, 509
MalI GATC 3 cut(s) 15, 242, 327
MboI GATC 3 cut(s) 13, 240, 325
MboII GAAGA 2 cut(s) 348, 391
MhlI GDGCHC 2 cut(s) 200, 481
MluCI AATT 4 cut(s) 104, 124, 137, 457
MnlI CCTC 7 cut(s) 87, 195, 270, 293, 346, 447, 549
MseI TTAA 2 cut(s) 107, 189
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 5 cut(s) 134, 143, 206, 543, 555
MvaI CCWGG 4 cut(s) 143, 206, 543, 555
MvnI CGCG 2 cut(s) 349, 351
MwoI GCNNNNNNNGC 1 cut(s) 167
NciI CCSGG 1 cut(s) 134
NdeII GATC 3 cut(s) 13, 240, 325
NlaIII CATG 2 cut(s) 234, 241
NlaIV GGNNCC 3 cut(s) 197, 273, 281
NmuCI GTSAC 2 cut(s) 56, 491
NsbI TGCGCA 1 cut(s) 416
PaqCI CACCTGC 1 cut(s) 433
PflMI CCANNNNNTGG 1 cut(s) 268
PfoI TCCNGGA 2 cut(s) 141, 541
PkrI GCNGC 5 cut(s) 169, 217, 308, 348, 504
PshBI ATTAAT 1 cut(s) 107
Psp6I CCWGG 4 cut(s) 141, 204, 541, 553
PspGI CCWGG 4 cut(s) 141, 204, 541, 553
PspN4I GGNNCC 3 cut(s) 197, 273, 281
PspPI GGNCC 3 cut(s) 18, 234, 271
PsrI GAACNNNNNNTAC 2 cut(s) 415, 447
RsaI GTAC 2 cut(s) 320, 386
RsaNI GTAC 2 cut(s) 319, 385
SaqAI TTAA 2 cut(s) 107, 189
SatI GCNGC 5 cut(s) 168, 216, 307, 347, 503
Sau3AI GATC 3 cut(s) 13, 240, 325
Sau96I GGNCC 3 cut(s) 18, 234, 271
ScaI AGTACT 1 cut(s) 386
ScrFI CCNGG 5 cut(s) 134, 143, 206, 543, 555
SduI GDGCHC 2 cut(s) 200, 481
SetI ASST 7 cut(s) 79, 228, 296, 311, 318, 357, 447
SinI GGWCC 2 cut(s) 234, 271
Sse9I AATT 4 cut(s) 104, 124, 137, 457
SsiI CCGC 5 cut(s) 168, 216, 347, 374, 429
SspMI CTAG 1 cut(s) 571
StyD4I CCNGG 5 cut(s) 132, 141, 204, 541, 553
StyI CCWWGG 2 cut(s) 21, 462
TaaI ACNGT 4 cut(s) 342, 422, 515, 567
TaiI ACGT 2 cut(s) 228, 296
TaqI TCGA 1 cut(s) 289
TasI AATT 4 cut(s) 104, 124, 137, 457
TatI WGTACW 2 cut(s) 318, 384
TauI GCSGC 3 cut(s) 170, 218, 349
Tru1I TTAA 2 cut(s) 107, 189
Tru9I TTAA 2 cut(s) 107, 189
TscAI CASTG 1 cut(s) 59
TseFI GTSAC 2 cut(s) 56, 491
TseI GCWGC 2 cut(s) 306, 502
Tsp45I GTSAC 2 cut(s) 56, 491
TspDTI ATGAA 1 cut(s) 20
TspRI CASTG 1 cut(s) 59
Van91I CCANNNNNTGG 1 cut(s) 268
VpaK11BI GGWCC 2 cut(s) 234, 271
VspI ATTAAT 1 cut(s) 107
XagI CCTNNNNNAGG 1 cut(s) 209
XapI RAATTY 3 cut(s) 124, 137, 457
XmiI GTMKAC 2 cut(s) 360, 437
XspI CTAG 1 cut(s) 571
ZrmI AGTACT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.