Rmu_sc0000388.1_g000011

STS14 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000388.1
OG0011513
Physical Location & Seq
Forward (+)
62480 .. 63055
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000388.1_g000011.1.cds

Sequence Viewer

Length: 576 bp
atggatcgggccttggttgtagtagtagccgtgactgtagccgtatgtctcacgcagtgtcacggcttagccagtaaacctcgttatatatttgatggaatgccaaaattaatcatccaaagaaaaaattttaccccggaattcctggaaactcacaacaaagcaagagccgcagttggggttgcccctcttaaatggagcccttccctggaaaaggccgcaagcgacgtagcatggtccatgatcaataacgaaaagggttgccattctttggacccgaggagcctcaatcgaacgtatgacattggcagcttcaacctgcactgggatcgttatagtagaccgtcgccgcgcgaggttgtagacaagtgggtggcggagaagaagtactacaaccactacaaaaactcgtgtgtgcgcaacagtaagtgcggttcgtatacgcaggtggtgtggaggaattccttggagttggggtgtgctcagcaaagatgtcacaagtggctgcaaagtaatggtataactctctgtctttatagtcctcctggaaatgttccagggcagagaccgtactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAP

Protein Analysis

191

Amino Acids

21.73

Weight (kDa)

9.47

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 436
Acc16I TGCGCA 1 cut(s) 419
Acc36I ACCTGC 2 cut(s) 327, 436
AccB7I CCANNNNNTGG 1 cut(s) 271
AccI GTMKAC 3 cut(s) 340, 363, 440
AccII CGCG 2 cut(s) 352, 354
AciI CCGC 5 cut(s) 171, 219, 350, 377, 432
AclWI GGATC 2 cut(s) 12, 336
AcsI RAATTY 3 cut(s) 127, 140, 460
AdeI CACNNNGTG 1 cut(s) 57
AfaI GTAC 2 cut(s) 389, 572
AfiI CCNNNNNNNGG 5 cut(s) 177, 208, 214, 271, 325
AgsI TTSAA 1 cut(s) 316
AjnI CCWGG 4 cut(s) 144, 207, 544, 556
AluBI AGCT 1 cut(s) 312
AluI AGCT 1 cut(s) 312
Alw21I GWGCWC 1 cut(s) 484
Alw26I GTCTC 2 cut(s) 53, 559
AlwI GGATC 2 cut(s) 12, 336
Ama87I CYCGRG 1 cut(s) 277
AoxI GGCC 2 cut(s) 9, 216
ApeKI GCWGC 2 cut(s) 309, 505
ApoI RAATTY 3 cut(s) 127, 140, 460
AseI ATTAAT 1 cut(s) 110
AspLEI GCGC 2 cut(s) 354, 420
AspS9I GGNCC 3 cut(s) 9, 237, 274
AsuC2I CCSGG 1 cut(s) 137
AvaI CYCGRG 1 cut(s) 277
AvaII GGWCC 2 cut(s) 237, 274
BanII GRGCYC 1 cut(s) 203
BarI GAAGNNNNNNTAC 2 cut(s) 374, 406
BauI CACGAG 1 cut(s) 409
Bbv12I GWGCWC 1 cut(s) 484
BbvI GCAGC 2 cut(s) 321, 492
BccI CCATC 1 cut(s) 89
BceAI ACGGC 3 cut(s) 14, 26, 79
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BciT130I CCWGG 4 cut(s) 146, 209, 546, 558
BclI TGATCA 1 cut(s) 243
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 2 cut(s) 53, 559
BfaI CTAG 1 cut(s) 574
BfmI CTRYAG 1 cut(s) 36
BfuAI ACCTGC 2 cut(s) 327, 436
BisI GCNGC 5 cut(s) 171, 219, 310, 350, 506
BlpI GCTNAGC 2 cut(s) 67, 483
BlsI GCNGC 5 cut(s) 172, 220, 311, 351, 507
BmcAI AGTACT 1 cut(s) 389
Bme1390I CCNGG 5 cut(s) 137, 146, 209, 546, 558
Bme18I GGWCC 2 cut(s) 237, 274
BmeT110I CYCGRG 1 cut(s) 277
BmgT120I GGNCC 3 cut(s) 9, 237, 274
BmiI GGNNCC 3 cut(s) 200, 276, 284
BmrFI CCNGG 5 cut(s) 137, 146, 209, 546, 558
BmrI ACTGGG 1 cut(s) 334
BmuI ACTGGG 1 cut(s) 334
Bpu1102I GCTNAGC 2 cut(s) 67, 483
BpuMI CCSGG 1 cut(s) 137
BsaI GGTCTC 1 cut(s) 559
BsaJI CCNNGG 6 cut(s) 12, 135, 207, 278, 465, 557
BsaXI ACNNNNNCTCC 4 cut(s) 371, 401, 461, 491
Bsc4I CCNNNNNNNGG 5 cut(s) 177, 208, 214, 271, 325
Bse1I ACTGG 2 cut(s) 72, 329
BseBI CCWGG 4 cut(s) 146, 209, 546, 558
BseDI CCNNGG 6 cut(s) 12, 135, 207, 278, 465, 557
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 5 cut(s) 177, 208, 214, 271, 325
BseMII CTCAG 1 cut(s) 497
BseNI ACTGG 2 cut(s) 72, 329
BseRI GAGGAG 1 cut(s) 295
BseXI GCAGC 2 cut(s) 321, 492
BsgI GTGCAG 1 cut(s) 305
Bsh1236I CGCG 2 cut(s) 352, 354
BshFI GGCC 2 cut(s) 11, 218
BsiHKAI GWGCWC 1 cut(s) 484
BsiHKCI CYCGRG 1 cut(s) 277
BsiSI CCGG 1 cut(s) 137
BslI CCNNNNNNNGG 5 cut(s) 177, 208, 214, 271, 325
BsmAI GTCTC 2 cut(s) 53, 559
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 2 cut(s) 11, 218
Bso31I GGTCTC 1 cut(s) 559
BsoBI CYCGRG 1 cut(s) 277
Bsp1286I GDGCHC 2 cut(s) 203, 484
Bsp143I GATC 3 cut(s) 4, 243, 328
Bsp1720I GCTNAGC 2 cut(s) 67, 483
BspACI CCGC 5 cut(s) 171, 219, 350, 377, 432
BspANI GGCC 2 cut(s) 11, 218
BspCNI CTCAG 1 cut(s) 496
BspFNI CGCG 2 cut(s) 352, 354
BspLI GGNNCC 3 cut(s) 200, 276, 284
BspMI ACCTGC 2 cut(s) 327, 436
BspPI GGATC 2 cut(s) 12, 336
BspTNI GGTCTC 1 cut(s) 559
BsrI ACTGG 2 cut(s) 72, 329
BssECI CCNNGG 6 cut(s) 12, 135, 207, 278, 465, 557
BssMI GATC 3 cut(s) 4, 243, 328
BssNAI GTATAC 1 cut(s) 441
BssSI CACGAG 1 cut(s) 409
BssT1I CCWWGG 2 cut(s) 12, 465
Bst1107I GTATAC 1 cut(s) 441
Bst2BI CACGAG 1 cut(s) 409
Bst2UI CCWGG 4 cut(s) 146, 209, 546, 558
Bst4CI ACNGT 4 cut(s) 37, 345, 425, 570
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 2 cut(s) 67, 483
BstENI CCTNNNNNAGG 1 cut(s) 212
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 2 cut(s) 352, 354
BstHHI GCGC 2 cut(s) 354, 420
BstKTI GATC 3 cut(s) 7, 246, 331
BstMAI GTCTC 2 cut(s) 53, 559
BstMBI GATC 3 cut(s) 4, 243, 328
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNI CCWGG 4 cut(s) 146, 209, 546, 558
BstSCI CCNGG 5 cut(s) 135, 144, 207, 544, 556
BstSFI CTRYAG 1 cut(s) 36
BstUI CGCG 2 cut(s) 352, 354
BstV1I GCAGC 2 cut(s) 321, 492
BstZ17I GTATAC 1 cut(s) 441
BsuRI GGCC 2 cut(s) 11, 218
BtsCI GGATG 1 cut(s) 114
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 2 cut(s) 62, 322
BveI ACCTGC 2 cut(s) 327, 436
Cac8I GCNNGC 1 cut(s) 223
CfoI GCGC 2 cut(s) 354, 420
Cfr13I GGNCC 3 cut(s) 9, 237, 274
Csp6I GTAC 2 cut(s) 388, 571
CviAII CATG 2 cut(s) 234, 241
CviQI GTAC 2 cut(s) 388, 571
DdeI CTNAG 2 cut(s) 67, 483
DpnI GATC 3 cut(s) 6, 245, 330
DpnII GATC 3 cut(s) 4, 243, 328
DraIII CACNNNGTG 1 cut(s) 57
EciI GGCGGA 1 cut(s) 392
Eco130I CCWWGG 2 cut(s) 12, 465
Eco24I GRGCYC 1 cut(s) 203
Eco31I GGTCTC 1 cut(s) 559
Eco47I GGWCC 2 cut(s) 237, 274
Eco88I CYCGRG 1 cut(s) 277
EcoNI CCTNNNNNAGG 1 cut(s) 212
EcoRI GAATTC 2 cut(s) 140, 460
EcoRII CCWGG 4 cut(s) 144, 207, 544, 556
EcoT14I CCWWGG 2 cut(s) 12, 465
EcoT38I GRGCYC 1 cut(s) 203
ErhI CCWWGG 2 cut(s) 12, 465
FaeI CATG 2 cut(s) 237, 244
FatI CATG 2 cut(s) 233, 240
FbaI TGATCA 1 cut(s) 243
FblI GTMKAC 3 cut(s) 340, 363, 440
Fnu4HI GCNGC 5 cut(s) 171, 219, 310, 350, 506
FokI GGATG 1 cut(s) 101
FriOI GRGCYC 1 cut(s) 203
Fsp4HI GCNGC 5 cut(s) 171, 219, 310, 350, 506
FspBI CTAG 1 cut(s) 574
FspI TGCGCA 1 cut(s) 419
GlaI GCGC 2 cut(s) 353, 419
GluI GCNGC 5 cut(s) 171, 219, 310, 350, 506
HaeIII GGCC 2 cut(s) 11, 218
HapII CCGG 1 cut(s) 137
HhaI GCGC 2 cut(s) 354, 420
Hin1II CATG 2 cut(s) 237, 244
Hin6I GCGC 2 cut(s) 352, 418
HinP1I GCGC 2 cut(s) 352, 418
HpaII CCGG 1 cut(s) 137
Hpy166II GTNNAC 4 cut(s) 77, 341, 364, 441
Hpy8I GTNNAC 4 cut(s) 77, 341, 364, 441
Hpy99I CGWCG 2 cut(s) 230, 349
HpyAV CCTTC 1 cut(s) 213
HpyCH4III ACNGT 4 cut(s) 37, 345, 425, 570
HpyCH4IV ACGT 2 cut(s) 228, 296
HpyCH4V TGCA 2 cut(s) 322, 508
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 2 cut(s) 67, 483
HpySE526I ACGT 2 cut(s) 228, 296
Hsp92II CATG 2 cut(s) 237, 244
HspAI GCGC 2 cut(s) 352, 418
Ksp22I TGATCA 1 cut(s) 243
Kzo9I GATC 3 cut(s) 4, 243, 328
LmnI GCTCC 2 cut(s) 198, 282
Lsp1109I GCAGC 2 cut(s) 321, 492
MaeI CTAG 1 cut(s) 574
MaeII ACGT 2 cut(s) 228, 296
MaeIII GTNAC 3 cut(s) 31, 59, 494
MalI GATC 3 cut(s) 6, 245, 330
MboI GATC 3 cut(s) 4, 243, 328
MboII GAAGA 1 cut(s) 394
MhlI GDGCHC 2 cut(s) 203, 484
MluCI AATT 4 cut(s) 107, 127, 140, 460
MnlI CCTC 7 cut(s) 90, 198, 273, 296, 349, 450, 552
MseI TTAA 2 cut(s) 110, 192
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 5 cut(s) 137, 146, 209, 546, 558
Mva1269I GAATGC 1 cut(s) 105
MvaI CCWGG 4 cut(s) 146, 209, 546, 558
MvnI CGCG 2 cut(s) 352, 354
MwoI GCNNNNNNNGC 1 cut(s) 170
NciI CCSGG 1 cut(s) 137
NdeII GATC 3 cut(s) 4, 243, 328
NlaIII CATG 2 cut(s) 237, 244
NlaIV GGNNCC 3 cut(s) 200, 276, 284
NmuCI GTSAC 3 cut(s) 31, 59, 494
NsbI TGCGCA 1 cut(s) 419
PaqCI CACCTGC 1 cut(s) 436
PctI GAATGC 1 cut(s) 105
PflMI CCANNNNNTGG 1 cut(s) 271
PfoI TCCNGGA 2 cut(s) 144, 544
PkrI GCNGC 5 cut(s) 172, 220, 311, 351, 507
PshBI ATTAAT 1 cut(s) 110
Psp6I CCWGG 4 cut(s) 144, 207, 544, 556
PspGI CCWGG 4 cut(s) 144, 207, 544, 556
PspN4I GGNNCC 3 cut(s) 200, 276, 284
PspPI GGNCC 3 cut(s) 9, 237, 274
PsrI GAACNNNNNNTAC 2 cut(s) 418, 450
RsaI GTAC 2 cut(s) 389, 572
RsaNI GTAC 2 cut(s) 388, 571
SaqAI TTAA 2 cut(s) 110, 192
SatI GCNGC 5 cut(s) 171, 219, 310, 350, 506
Sau3AI GATC 3 cut(s) 4, 243, 328
Sau96I GGNCC 3 cut(s) 9, 237, 274
ScaI AGTACT 1 cut(s) 389
ScrFI CCNGG 5 cut(s) 137, 146, 209, 546, 558
SduI GDGCHC 2 cut(s) 203, 484
SetI ASST 7 cut(s) 82, 231, 299, 314, 321, 360, 450
SfcI CTRYAG 1 cut(s) 36
SinI GGWCC 2 cut(s) 237, 274
Sse9I AATT 4 cut(s) 107, 127, 140, 460
SsiI CCGC 5 cut(s) 171, 219, 350, 377, 432
SspMI CTAG 1 cut(s) 574
StyD4I CCNGG 5 cut(s) 135, 144, 207, 544, 556
StyI CCWWGG 2 cut(s) 12, 465
TaaI ACNGT 4 cut(s) 37, 345, 425, 570
TaiI ACGT 2 cut(s) 231, 299
TaqI TCGA 1 cut(s) 292
TasI AATT 4 cut(s) 107, 127, 140, 460
TatI WGTACW 1 cut(s) 387
TauI GCSGC 3 cut(s) 173, 221, 352
Tru1I TTAA 2 cut(s) 110, 192
Tru9I TTAA 2 cut(s) 110, 192
TscAI CASTG 2 cut(s) 62, 329
TseFI GTSAC 3 cut(s) 31, 59, 494
TseI GCWGC 2 cut(s) 309, 505
Tsp45I GTSAC 3 cut(s) 31, 59, 494
TspRI CASTG 2 cut(s) 62, 329
Van91I CCANNNNNTGG 1 cut(s) 271
VpaK11BI GGWCC 2 cut(s) 237, 274
VspI ATTAAT 1 cut(s) 110
XagI CCTNNNNNAGG 1 cut(s) 212
XapI RAATTY 3 cut(s) 127, 140, 460
XmiI GTMKAC 3 cut(s) 340, 363, 440
XspI CTAG 1 cut(s) 574
ZrmI AGTACT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.