RLG00000017205

STS14 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011513
Physical Location & Seq
Reverse (-)
14130890 .. 14131400
511 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017205

Sequence Viewer

Length: 417 bp
ATGGATCGGGCCTTGGTTGTAGTACTAACCGTGACTATAGCCGTACGTCTCACCCAGTGTCACGGCTTAGCCAGTAAACGTCGTTATATATTTTATGGAATGCCAAAAATCATCCCCAGAAAAATTTTTACCCCGGAATTCCTGGAAACTCACAACAAAGCAAGAGCAGCAGTTGGGGTGCCCCTCTTAAATGGAGCCCTTCCCTGGAAAAGGCCGCAAGCGACAACACCGTCGCCGCGCGAGGTTGTAGACAAGTGGGTGGAGGAGAAGAAGTACTACAACCACGGCAAAAACTCGTGTGTGCGCAACAGTAAGTGCGGTTCGTATACGCCGGTGGTGTGGAGGAACTCCTTGGAGTTGGGGTGTGCTCAGCAAAGATGTCTCAAGTGGCTGCAAAGTAATGCTGTAATGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAP

Protein Analysis

139

Amino Acids

15.73

Weight (kDa)

10.03

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 229
Acc16I TGCGCA 1 cut(s) 305
AccB1I GGYRCC 1 cut(s) 178
AccI GTMKAC 2 cut(s) 249, 326
AccII CGCG 2 cut(s) 238, 240
AciI CCGC 3 cut(s) 215, 236, 318
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 123, 137
AdeI CACNNNGTG 1 cut(s) 57
AfaI GTAC 3 cut(s) 24, 45, 275
AfiI CCNNNNNNNGG 2 cut(s) 204, 210
AjnI CCWGG 2 cut(s) 141, 203
Alw21I GWGCWC 1 cut(s) 370
Alw26I GTCTC 2 cut(s) 53, 386
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 9, 212
ApeKI GCWGC 2 cut(s) 167, 391
ApoI RAATTY 2 cut(s) 123, 137
AspLEI GCGC 2 cut(s) 240, 306
AspS9I GGNCC 1 cut(s) 9
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 43
BaeGI GKGCMC 1 cut(s) 183
BanI GGYRCC 1 cut(s) 178
BanII GRGCYC 1 cut(s) 199
BarI GAAGNNNNNNTAC 2 cut(s) 260, 292
BauI CACGAG 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 370
BbvI GCAGC 2 cut(s) 179, 378
BceAI ACGGC 3 cut(s) 26, 79, 301
BciT130I CCWGG 2 cut(s) 143, 205
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 2 cut(s) 53, 386
BfmI CTRYAG 1 cut(s) 36
BisI GCNGC 4 cut(s) 168, 215, 236, 392
BlpI GCTNAGC 2 cut(s) 67, 369
BlsI GCNGC 4 cut(s) 169, 216, 237, 393
BmcAI AGTACT 2 cut(s) 24, 275
Bme1390I CCNGG 3 cut(s) 134, 143, 205
BmgT120I GGNCC 1 cut(s) 9
BmiI GGNNCC 2 cut(s) 180, 196
BmrFI CCNGG 3 cut(s) 134, 143, 205
BmrI ACTGGG 1 cut(s) 49
BmuI ACTGGG 1 cut(s) 49
Bpu1102I GCTNAGC 2 cut(s) 67, 369
BpuEI CTTGAG 1 cut(s) 368
BpuMI CCSGG 1 cut(s) 134
BsaJI CCNNGG 5 cut(s) 12, 132, 203, 283, 351
BsaXI ACNNNNNCTCC 4 cut(s) 257, 287, 347, 377
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 210
Bse118I RCCGGY 1 cut(s) 331
Bse1I ACTGG 2 cut(s) 55, 72
BseBI CCWGG 2 cut(s) 143, 205
BseDI CCNNGG 5 cut(s) 12, 132, 203, 283, 351
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 2 cut(s) 204, 210
BseMII CTCAG 1 cut(s) 383
BseNI ACTGG 2 cut(s) 55, 72
BseRI GAGGAG 1 cut(s) 278
BseSI GKGCMC 1 cut(s) 183
BseXI GCAGC 2 cut(s) 179, 378
Bsh1236I CGCG 2 cut(s) 238, 240
BshFI GGCC 2 cut(s) 11, 214
BshNI GGYRCC 1 cut(s) 178
BsiHKAI GWGCWC 1 cut(s) 370
BsiSI CCGG 2 cut(s) 134, 332
BsiWI CGTACG 1 cut(s) 43
BslI CCNNNNNNNGG 2 cut(s) 204, 210
BsmAI GTCTC 2 cut(s) 53, 386
BsmBI CGTCTC 1 cut(s) 53
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 2 cut(s) 11, 214
Bsp1286I GDGCHC 3 cut(s) 183, 199, 370
Bsp143I GATC 1 cut(s) 4
Bsp1720I GCTNAGC 2 cut(s) 67, 369
BspACI CCGC 3 cut(s) 215, 236, 318
BspANI GGCC 2 cut(s) 11, 214
BspCNI CTCAG 1 cut(s) 382
BspFNI CGCG 2 cut(s) 238, 240
BspLI GGNNCC 2 cut(s) 180, 196
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 178
BsrFI RCCGGY 1 cut(s) 331
BsrI ACTGG 2 cut(s) 55, 72
BssAI RCCGGY 1 cut(s) 331
BssECI CCNNGG 5 cut(s) 12, 132, 203, 283, 351
BssMI GATC 1 cut(s) 4
BssNAI GTATAC 1 cut(s) 327
BssSI CACGAG 1 cut(s) 295
BssT1I CCWWGG 2 cut(s) 12, 351
Bst1107I GTATAC 1 cut(s) 327
Bst2BI CACGAG 1 cut(s) 295
Bst2UI CCWGG 2 cut(s) 143, 205
Bst4CI ACNGT 3 cut(s) 31, 231, 311
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 2 cut(s) 67, 369
BstDSI CCRYGG 1 cut(s) 283
BstENI CCTNNNNNAGG 1 cut(s) 208
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 2 cut(s) 238, 240
BstHHI GCGC 2 cut(s) 240, 306
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 2 cut(s) 53, 386
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 2 cut(s) 143, 205
BstSCI CCNGG 3 cut(s) 132, 141, 203
BstSFI CTRYAG 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 183
BstUI CGCG 2 cut(s) 238, 240
BstV1I GCAGC 2 cut(s) 179, 378
BstZ17I GTATAC 1 cut(s) 327
BsuRI GGCC 2 cut(s) 11, 214
BtgI CCRYGG 1 cut(s) 283
BtsCI GGATG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 62
Cac8I GCNNGC 1 cut(s) 219
CfoI GCGC 2 cut(s) 240, 306
Cfr10I RCCGGY 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 9
Csp6I GTAC 3 cut(s) 23, 44, 274
CviJI RGCY 7 cut(s) 11, 41, 66, 71, 197, 214, 391
CviKI_1 RGCY 7 cut(s) 11, 41, 66, 71, 197, 214, 391
CviQI GTAC 3 cut(s) 23, 44, 274
DdeI CTNAG 2 cut(s) 67, 369
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
DraIII CACNNNGTG 1 cut(s) 57
DrdI GACNNNNNNGTC 1 cut(s) 229
DseDI GACNNNNNNGTC 1 cut(s) 229
Eco130I CCWWGG 2 cut(s) 12, 351
Eco24I GRGCYC 1 cut(s) 199
EcoNI CCTNNNNNAGG 1 cut(s) 208
EcoRI GAATTC 1 cut(s) 137
EcoRII CCWGG 2 cut(s) 141, 203
EcoT14I CCWWGG 2 cut(s) 12, 351
EcoT38I GRGCYC 1 cut(s) 199
ErhI CCWWGG 2 cut(s) 12, 351
Esp3I CGTCTC 1 cut(s) 53
FaiI YATR 6 cut(s) 38, 87, 89, 96, 327, 415
FblI GTMKAC 2 cut(s) 249, 326
Fnu4HI GCNGC 4 cut(s) 168, 215, 236, 392
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 4 cut(s) 168, 215, 236, 392
FspI TGCGCA 1 cut(s) 305
GlaI GCGC 2 cut(s) 239, 305
GluI GCNGC 4 cut(s) 168, 215, 236, 392
HaeIII GGCC 2 cut(s) 11, 214
HapII CCGG 2 cut(s) 134, 332
HhaI GCGC 2 cut(s) 240, 306
Hin6I GCGC 2 cut(s) 238, 304
HinP1I GCGC 2 cut(s) 238, 304
HpaII CCGG 2 cut(s) 134, 332
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 3 cut(s) 77, 250, 327
Hpy8I GTNNAC 3 cut(s) 77, 250, 327
Hpy99I CGWCG 2 cut(s) 84, 235
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 3 cut(s) 31, 231, 311
HpyCH4IV ACGT 2 cut(s) 46, 79
HpyCH4V TGCA 1 cut(s) 394
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 2 cut(s) 67, 369
HpySE526I ACGT 2 cut(s) 46, 79
HspAI GCGC 2 cut(s) 238, 304
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 194
LpnPI CCDG 9 cut(s) 68, 85, 128, 130, 147, 155, 190, 217, 345
Lsp1109I GCAGC 2 cut(s) 179, 378
MaeII ACGT 2 cut(s) 46, 79
MaeIII GTNAC 2 cut(s) 31, 59
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 1 cut(s) 280
MhlI GDGCHC 3 cut(s) 183, 199, 370
MluCI AATT 2 cut(s) 123, 137
MnlI CCTC 4 cut(s) 194, 235, 256, 336
MseI TTAA 1 cut(s) 188
MspI CCGG 2 cut(s) 134, 332
MspR9I CCNGG 3 cut(s) 134, 143, 205
Mva1269I GAATGC 1 cut(s) 105
MvaI CCWGG 2 cut(s) 143, 205
MvnI CGCG 2 cut(s) 238, 240
MwoI GCNNNNNNNGC 1 cut(s) 167
NciI CCSGG 1 cut(s) 134
NdeII GATC 1 cut(s) 4
NlaIV GGNNCC 2 cut(s) 180, 196
NmuCI GTSAC 2 cut(s) 31, 59
NsbI TGCGCA 1 cut(s) 305
PctI GAATGC 1 cut(s) 105
Pfl23II CGTACG 1 cut(s) 43
PfoI TCCNGGA 1 cut(s) 141
PkrI GCNGC 4 cut(s) 169, 216, 237, 393
Psp6I CCWGG 2 cut(s) 141, 203
PspGI CCWGG 2 cut(s) 141, 203
PspLI CGTACG 1 cut(s) 43
PspN4I GGNNCC 2 cut(s) 180, 196
PspPI GGNCC 1 cut(s) 9
PsrI GAACNNNNNNTAC 2 cut(s) 304, 336
RsaI GTAC 3 cut(s) 24, 45, 275
RsaNI GTAC 3 cut(s) 23, 44, 274
SaqAI TTAA 1 cut(s) 188
SatI GCNGC 4 cut(s) 168, 215, 236, 392
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 1 cut(s) 9
ScaI AGTACT 2 cut(s) 24, 275
ScrFI CCNGG 3 cut(s) 134, 143, 205
SduI GDGCHC 3 cut(s) 183, 199, 370
SetI ASST 3 cut(s) 49, 82, 246
SfcI CTRYAG 1 cut(s) 36
SgrAI CRCCGGYG 1 cut(s) 331
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 2 cut(s) 123, 137
SsiI CCGC 3 cut(s) 215, 236, 318
StyD4I CCNGG 3 cut(s) 132, 141, 203
StyI CCWWGG 2 cut(s) 12, 351
TaaI ACNGT 3 cut(s) 31, 231, 311
TaiI ACGT 2 cut(s) 49, 82
TasI AATT 2 cut(s) 123, 137
TatI WGTACW 2 cut(s) 22, 273
TauI GCSGC 2 cut(s) 217, 238
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TscAI CASTG 1 cut(s) 62
TseFI GTSAC 2 cut(s) 31, 59
TseI GCWGC 2 cut(s) 167, 391
Tsp45I GTSAC 2 cut(s) 31, 59
TspRI CASTG 1 cut(s) 62
XagI CCTNNNNNAGG 1 cut(s) 208
XapI RAATTY 2 cut(s) 123, 137
XmiI GTMKAC 2 cut(s) 249, 326
ZrmI AGTACT 2 cut(s) 24, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.