Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8471583.1

Orthogroup ID

OG0011513

Physical Location & Seq

Genomic Coordinates Reverse (-)

302 .. 892

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8471583.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atggctcgggccttggttgtagtactagccgtgactgtagccatatgtctcactcagtgtcacggctacggcttacctgttagacctcattatataaacttttacggatcaggaccaaggctcatccccagaacaaatttatccctggatttcctggaaagtcagaacaaagcaagagccgcagttggggttgcccctcttaaatggagcccttccctggaaaaggccgcacacgacgtagcatggtccatgatctataatgaaaagggttgccattcttatttggacccgatgagcctcaatcgaacgtttgacattggcggctacaaccagcactgggatcgttatggaacactgccaccgggcgaggttgtggacaagtggttgctgatgaagaagtactacaactacgccaataactcgtgtagtgtgcgcaacaataggtgcggttggtatacgcaggtggtgtggaggaactccttggagttggggtgtgctcaggaaagatgtttcgagaaccggcaaagtaacggtatgactatctgtctttatagtcctcgtggaaatgttccagggcagagaccgtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP

Protein Analysis

196

Amino Acids

22.29

Weight (kDa)

9.13

Isoelectric Point (pI)

35.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011513)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14380
rosa_chinensis	RchiOBHm_Chr2g0103081 RchiOBHm_Chr2g0103091
rosa_laevigata	RLG00000017205 RLG00000017206
rosa_multiflora	Rmu_co8471583.1_g000001 Rmu_sc0000388.1_g000011
rosa_roxburghii	Rroxscaffold_2G00139940 Rroxscaffold_2G00139950
rosa_rugosa	Rorug02G0111900 Rorug02G0111900
rosa_samantha	Rh2AG160100 Rh2AG160300 Rh2BG166700 Rh2BG166800 Rh2CG167100 Rh2CG167400 Rh2DG165800
rosa_wichuraiana	Rw2G012540 Rw2G012550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	451
Acc16I	TGCGCA	1 cut(s)	434
Acc36I	ACCTGC	1 cut(s)	451
AccI	GTMKAC	1 cut(s)	455
AciI	CCGC	4 cut(s)	180, 228, 321, 447
AclI	AACGTT	1 cut(s)	308
AclWI	GGATC	2 cut(s)	115, 348
AcsI	RAATTY	1 cut(s)	136
AdeI	CACNNNGTG	1 cut(s)	57
AfaI	GTAC	3 cut(s)	24, 401, 587
AfiI	CCNNNNNNNGG	4 cut(s)	186, 217, 223, 337
AhdI	GACNNNNNGTC	1 cut(s)	543
AjnI	CCWGG	4 cut(s)	144, 153, 216, 571
Alw21I	GWGCWC	1 cut(s)	499
Alw26I	GTCTC	2 cut(s)	53, 574
AlwI	GGATC	2 cut(s)	115, 348
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	2 cut(s)	9, 225
ApoI	RAATTY	1 cut(s)	136
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	4 cut(s)	9, 113, 246, 286
AsuC2I	CCSGG	1 cut(s)	363
AvaI	CYCGRG	1 cut(s)	6
AvaII	GGWCC	3 cut(s)	113, 246, 286
BanII	GRGCYC	1 cut(s)	212
BarI	GAAGNNNNNNTAC	2 cut(s)	386, 418
BauI	CACGAG	2 cut(s)	421, 558
Bbv12I	GWGCWC	1 cut(s)	499
BceAI	ACGGC	3 cut(s)	14, 79, 85
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BciT130I	CCWGG	4 cut(s)	146, 155, 218, 573
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	53, 574
BfaI	CTAG	2 cut(s)	26, 589
BfmI	CTRYAG	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	451
BisI	GCNGC	3 cut(s)	180, 228, 322
BlsI	GCNGC	3 cut(s)	181, 229, 323
BmcAI	AGTACT	2 cut(s)	24, 401
Bme1390I	CCNGG	5 cut(s)	146, 155, 218, 363, 573
Bme18I	GGWCC	3 cut(s)	113, 246, 286
BmeRI	GACNNNNNGTC	1 cut(s)	543
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	4 cut(s)	9, 113, 246, 286
BmiI	GGNNCC	2 cut(s)	209, 288
BmrFI	CCNGG	5 cut(s)	146, 155, 218, 363, 573
BmrI	ACTGGG	1 cut(s)	346
BmuI	ACTGGG	1 cut(s)	346
Bpu10I	CCTNAGC	1 cut(s)	498
BpuMI	CCSGG	1 cut(s)	363
BsaI	GGTCTC	1 cut(s)	574
BsaJI	CCNNGG	6 cut(s)	12, 116, 144, 216, 480, 572
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bsc4I	CCNNNNNNNGG	4 cut(s)	186, 217, 223, 337
Bse118I	RCCGGY	1 cut(s)	519
Bse1I	ACTGG	1 cut(s)	341
BseBI	CCWGG	4 cut(s)	146, 155, 218, 573
BseDI	CCNNGG	6 cut(s)	12, 116, 144, 216, 480, 572
BseGI	GGATG	1 cut(s)	123
BseLI	CCNNNNNNNGG	4 cut(s)	186, 217, 223, 337
BseMII	CTCAG	2 cut(s)	68, 512
BseNI	ACTGG	1 cut(s)	341
BshFI	GGCC	2 cut(s)	11, 227
BsiHKAI	GWGCWC	1 cut(s)	499
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	2 cut(s)	362, 520
BslI	CCNNNNNNNGG	4 cut(s)	186, 217, 223, 337
BsmAI	GTCTC	2 cut(s)	53, 574
BsnI	GGCC	2 cut(s)	11, 227
Bso31I	GGTCTC	1 cut(s)	574
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	2 cut(s)	212, 499
Bsp143I	GATC	3 cut(s)	107, 252, 340
BspACI	CCGC	4 cut(s)	180, 228, 321, 447
BspANI	GGCC	2 cut(s)	11, 227
BspCNI	CTCAG	2 cut(s)	67, 511
BspLI	GGNNCC	2 cut(s)	209, 288
BspMI	ACCTGC	1 cut(s)	451
BspPI	GGATC	2 cut(s)	115, 348
BspTNI	GGTCTC	1 cut(s)	574
BsrFI	RCCGGY	1 cut(s)	519
BsrI	ACTGG	1 cut(s)	341
BssAI	RCCGGY	1 cut(s)	519
BssECI	CCNNGG	6 cut(s)	12, 116, 144, 216, 480, 572
BssMI	GATC	3 cut(s)	107, 252, 340
BssNAI	GTATAC	1 cut(s)	456
BssSI	CACGAG	2 cut(s)	421, 558
BssT1I	CCWWGG	3 cut(s)	12, 116, 480
Bst1107I	GTATAC	1 cut(s)	456
Bst2BI	CACGAG	2 cut(s)	421, 558
Bst2UI	CCWGG	4 cut(s)	146, 155, 218, 573
Bst4CI	ACNGT	3 cut(s)	37, 533, 585
BstDEI	CTNAG	2 cut(s)	54, 498
BstENI	CCTNNNNNAGG	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	3 cut(s)	110, 255, 343
BstMAI	GTCTC	2 cut(s)	53, 574
BstMBI	GATC	3 cut(s)	107, 252, 340
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	4 cut(s)	146, 155, 218, 573
BstSCI	CCNGG	5 cut(s)	144, 153, 216, 361, 571
BstSFI	CTRYAG	1 cut(s)	36
BstZ17I	GTATAC	1 cut(s)	456
BsuRI	GGCC	2 cut(s)	11, 227
BtsCI	GGATG	1 cut(s)	123
BtsI	GCAGTG	1 cut(s)	353
BtsIMutI	CAGTG	3 cut(s)	62, 334, 353
BveI	ACCTGC	1 cut(s)	451
CfoI	GCGC	1 cut(s)	435
Cfr10I	RCCGGY	1 cut(s)	519
Cfr13I	GGNCC	4 cut(s)	9, 113, 246, 286
Csp6I	GTAC	3 cut(s)	23, 400, 586
CviAII	CATG	2 cut(s)	243, 250
CviQI	GTAC	3 cut(s)	23, 400, 586
DdeI	CTNAG	2 cut(s)	54, 498
DpnI	GATC	3 cut(s)	109, 254, 342
DpnII	GATC	3 cut(s)	107, 252, 340
DraIII	CACNNNGTG	1 cut(s)	57
DriI	GACNNNNNGTC	1 cut(s)	543
Eam1105I	GACNNNNNGTC	1 cut(s)	543
Eco130I	CCWWGG	3 cut(s)	12, 116, 480
Eco24I	GRGCYC	1 cut(s)	212
Eco31I	GGTCTC	1 cut(s)	574
Eco47I	GGWCC	3 cut(s)	113, 246, 286
Eco88I	CYCGRG	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	221
EcoRII	CCWGG	4 cut(s)	144, 153, 216, 571
EcoT14I	CCWWGG	3 cut(s)	12, 116, 480
EcoT38I	GRGCYC	1 cut(s)	212
ErhI	CCWWGG	3 cut(s)	12, 116, 480
FaeI	CATG	2 cut(s)	246, 253
FatI	CATG	2 cut(s)	242, 249
FauNDI	CATATG	1 cut(s)	44
FblI	GTMKAC	1 cut(s)	455
Fnu4HI	GCNGC	3 cut(s)	180, 228, 322
FokI	GGATG	1 cut(s)	110
FriOI	GRGCYC	1 cut(s)	212
Fsp4HI	GCNGC	3 cut(s)	180, 228, 322
FspBI	CTAG	2 cut(s)	26, 589
FspI	TGCGCA	1 cut(s)	434
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	3 cut(s)	180, 228, 322
HaeIII	GGCC	2 cut(s)	11, 227
HapII	CCGG	2 cut(s)	362, 520
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	2 cut(s)	246, 253
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HpaII	CCGG	2 cut(s)	362, 520
Hpy166II	GTNNAC	2 cut(s)	376, 456
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	3 cut(s)	111, 500, 514
Hpy8I	GTNNAC	2 cut(s)	376, 456
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	222
HpyCH4III	ACNGT	3 cut(s)	37, 533, 585
HpyCH4IV	ACGT	2 cut(s)	237, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	2 cut(s)	54, 498
HpySE526I	ACGT	2 cut(s)	237, 308
Hsp92II	CATG	2 cut(s)	246, 253
HspAI	GCGC	1 cut(s)	433
Kzo9I	GATC	3 cut(s)	107, 252, 340
LmnI	GCTCC	1 cut(s)	207
MaeI	CTAG	2 cut(s)	26, 589
MaeII	ACGT	2 cut(s)	237, 308
MaeIII	GTNAC	3 cut(s)	31, 59, 527
MalI	GATC	3 cut(s)	109, 254, 342
MboI	GATC	3 cut(s)	107, 252, 340
MboII	GAAGA	1 cut(s)	406
MhlI	GDGCHC	2 cut(s)	212, 499
MluCI	AATT	1 cut(s)	136
MnlI	CCTC	6 cut(s)	96, 207, 308, 361, 465, 567
MseI	TTAA	1 cut(s)	201
MspI	CCGG	2 cut(s)	362, 520
MspR9I	CCNGG	5 cut(s)	146, 155, 218, 363, 573
MvaI	CCWGG	4 cut(s)	146, 155, 218, 573
MwoI	GCNNNNNNNGC	1 cut(s)	179
NciI	CCSGG	1 cut(s)	363
NdeI	CATATG	1 cut(s)	44
NdeII	GATC	3 cut(s)	107, 252, 340
NlaIII	CATG	2 cut(s)	246, 253
NlaIV	GGNNCC	2 cut(s)	209, 288
NmuCI	GTSAC	2 cut(s)	31, 59
NsbI	TGCGCA	1 cut(s)	434
PaqCI	CACCTGC	1 cut(s)	451
PfoI	TCCNGGA	1 cut(s)	153
PkrI	GCNGC	3 cut(s)	181, 229, 323
Psp1406I	AACGTT	1 cut(s)	308
Psp6I	CCWGG	4 cut(s)	144, 153, 216, 571
PspGI	CCWGG	4 cut(s)	144, 153, 216, 571
PspN4I	GGNNCC	2 cut(s)	209, 288
PspPI	GGNCC	4 cut(s)	9, 113, 246, 286
RsaI	GTAC	3 cut(s)	24, 401, 587
RsaNI	GTAC	3 cut(s)	23, 400, 586
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	3 cut(s)	180, 228, 322
Sau3AI	GATC	3 cut(s)	107, 252, 340
Sau96I	GGNCC	4 cut(s)	9, 113, 246, 286
ScaI	AGTACT	2 cut(s)	24, 401
ScrFI	CCNGG	5 cut(s)	146, 155, 218, 363, 573
SduI	GDGCHC	2 cut(s)	212, 499
SetI	ASST	7 cut(s)	79, 88, 240, 311, 372, 446, 465
SfcI	CTRYAG	1 cut(s)	36
SinI	GGWCC	3 cut(s)	113, 246, 286
Sse9I	AATT	1 cut(s)	136
SsiI	CCGC	4 cut(s)	180, 228, 321, 447
SspMI	CTAG	2 cut(s)	26, 589
StyD4I	CCNGG	5 cut(s)	144, 153, 216, 361, 571
StyI	CCWWGG	3 cut(s)	12, 116, 480
TaaI	ACNGT	3 cut(s)	37, 533, 585
TaiI	ACGT	2 cut(s)	240, 311
TaqI	TCGA	2 cut(s)	304, 513
TasI	AATT	1 cut(s)	136
TatI	WGTACW	2 cut(s)	22, 399
TauI	GCSGC	3 cut(s)	182, 230, 324
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	3 cut(s)	62, 341, 360
TseFI	GTSAC	2 cut(s)	31, 59
Tsp45I	GTSAC	2 cut(s)	31, 59
TspDTI	ATGAA	2 cut(s)	276, 407
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	3 cut(s)	62, 341, 360
VpaK11BI	GGWCC	3 cut(s)	113, 246, 286
XagI	CCTNNNNNAGG	1 cut(s)	221
XapI	RAATTY	1 cut(s)	136
XmiI	GTMKAC	1 cut(s)	455
XspI	CTAG	2 cut(s)	26, 589
ZrmI	AGTACT	2 cut(s)	24, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.