RchiOBHm_Chr2g0105661

Protein of unknown function (DUF1685)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012887
Physical Location & Seq
Reverse (-)
16936810 .. 16938085
1276 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 447 bp
ATGCTCATGCCTCCTAATCCTCTCTACAAGCAGAAGTCGTGGTCCCCGGACGCCTACCGCGACGAGGCGTGGCACCGCCGCAAAAGCAACAGCAGGAAGCAAAAGCAGCGGAGCAAGAGCGTCACCGACGAAGACCTTGACGAGTTGAAAGCATGTATTGAGTTGGGGTTCGGGTTTGAGCCGCCGCCGGAGGAGGAGGATGCTGACCAACGACTCTCCGATACTCTTCCCGCTTTGGGACTCTACTACGCCGTCAACAGAAGCTACAAGTCTTCCACCACTCCGACGTCGTCGTTCTCGCCGACACCGTCGGAGTGCGACTCCCACTCCCCCATCGGCAGCCCCCACACCATATTCGGTCCCGGGGATAATCCACAGACGGTGAAGGCAAGGTTGAAGCAGTGGGCACAGGTGGTTGCTTGCACGGTGAGGCAGGGTTCGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

148

Amino Acids

16.57

Weight (kDa)

6.82

Isoelectric Point (pI)

80.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1685 PF07939 41 - 100 2.5e-26 Protein of unknown function (DUF1685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50350 AT3G50350
fragaria_vesca FvH4_1g16050
malus_domestica MD02G1171900.v1.1 MD15G1283800.v1.1
prunus_persica Prupe.7G133400_v2.0.a1
pyrus_communis pycom02g13860 pycom15g24680
rosa_chinensis RchiOBHm_Chr2g0105661
rosa_laevigata RLG00000017447
rosa_multiflora Rmu_sc0001051.1_g000050
rosa_roxburghii Rroxscaffold_2G00138010
rosa_rugosa Rorug02G0129100
rosa_samantha Rh2AG180700 Rh2BG189600 Rh2CG184900 Rh2DG186700
rosa_wichuraiana Rw2G014120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 290
AccB1I GGYRCC 1 cut(s) 72
AccII CGCG 1 cut(s) 60
AciI CCGC 7 cut(s) 58, 76, 79, 109, 182, 185, 231
AcyI GRCGYC 2 cut(s) 51, 287
AfiI CCNNNNNNNGG 2 cut(s) 64, 236
AgsI TTSAA 2 cut(s) 148, 397
AluBI AGCT 2 cut(s) 264, 444
AluI AGCT 2 cut(s) 264, 444
Ama87I CYCGRG 1 cut(s) 362
ApeKI GCWGC 2 cut(s) 106, 339
AspS9I GGNCC 2 cut(s) 42, 359
AsuC2I CCSGG 3 cut(s) 47, 363, 364
AsuHPI GGTGA 3 cut(s) 115, 394, 439
AvaI CYCGRG 1 cut(s) 362
AvaII GGWCC 2 cut(s) 42, 359
BaeGI GKGCMC 1 cut(s) 409
BanI GGYRCC 1 cut(s) 72
BbsI GAAGAC 2 cut(s) 138, 264
BbvI GCAGC 2 cut(s) 118, 351
BccI CCATC 1 cut(s) 341
BceAI ACGGC 1 cut(s) 236
BcnI CCSGG 3 cut(s) 47, 363, 364
BisI GCNGC 5 cut(s) 79, 107, 182, 185, 340
BlsI GCNGC 5 cut(s) 80, 108, 183, 186, 341
Bme1390I CCNGG 3 cut(s) 47, 363, 364
Bme18I GGWCC 2 cut(s) 42, 359
BmeT110I CYCGRG 1 cut(s) 362
BmgT120I GGNCC 2 cut(s) 42, 359
BmiI GGNNCC 3 cut(s) 44, 74, 361
BmrFI CCNGG 3 cut(s) 47, 363, 364
BmsI GCATC 1 cut(s) 190
BpiI GAAGAC 2 cut(s) 138, 264
BplI GAGNNNNNCTC 2 cut(s) 305, 337
BpuMI CCSGG 3 cut(s) 47, 363, 364
BsaHI GRCGYC 2 cut(s) 51, 287
BsaJI CCNNGG 3 cut(s) 45, 362, 363
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 236
BseDI CCNNGG 3 cut(s) 45, 362, 363
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 2 cut(s) 64, 236
BseRI GAGGAG 2 cut(s) 206, 209
BseSI GKGCMC 1 cut(s) 409
BseXI GCAGC 2 cut(s) 118, 351
Bsh1236I CGCG 1 cut(s) 60
BshNI GGYRCC 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 362
BsiSI CCGG 3 cut(s) 47, 188, 363
BslFI GGGAC 3 cut(s) 28, 252, 345
BslI CCNNNNNNNGG 2 cut(s) 64, 236
BsmFI GGGAC 3 cut(s) 28, 252, 345
BsoBI CYCGRG 1 cut(s) 362
Bsp1286I GDGCHC 1 cut(s) 409
BspACI CCGC 7 cut(s) 58, 76, 79, 109, 182, 185, 231
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 3 cut(s) 44, 74, 361
BspT107I GGYRCC 1 cut(s) 72
BssECI CCNNGG 3 cut(s) 45, 362, 363
BssNI GRCGYC 2 cut(s) 51, 287
Bst4CI ACNGT 3 cut(s) 309, 382, 427
Bst6I CTCTTC 1 cut(s) 231
BstACI GRCGYC 2 cut(s) 51, 287
BstC8I GCNNGC 1 cut(s) 421
BstF5I GGATG 1 cut(s) 205
BstFNI CGCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 2 cut(s) 84, 106
BstNSI RCATGY 1 cut(s) 156
BstSCI CCNGG 3 cut(s) 45, 361, 362
BstSLI GKGCMC 1 cut(s) 409
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 2 cut(s) 118, 351
BstV2I GAAGAC 2 cut(s) 138, 264
BtsCI GGATG 1 cut(s) 205
BtsI GCAGTG 1 cut(s) 407
BtsIMutI CAGTG 1 cut(s) 407
Cac8I GCNNGC 1 cut(s) 421
Cfr13I GGNCC 2 cut(s) 42, 359
Cfr9I CCCGGG 1 cut(s) 362
CseI GACGC 2 cut(s) 59, 109
CviAII CATG 2 cut(s) 7, 153
CviJI RGCY 4 cut(s) 181, 264, 342, 444
CviKI_1 RGCY 4 cut(s) 181, 264, 342, 444
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco47I GGWCC 2 cut(s) 42, 359
Eco88I CYCGRG 1 cut(s) 362
FaeI CATG 2 cut(s) 10, 156
FaiI YATR 3 cut(s) 8, 154, 353
FaqI GGGAC 3 cut(s) 28, 252, 345
FatI CATG 2 cut(s) 6, 152
FauI CCCGC 1 cut(s) 238
Fnu4HI GCNGC 5 cut(s) 79, 107, 182, 185, 340
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 5 cut(s) 79, 107, 182, 185, 340
GluI GCNGC 5 cut(s) 79, 107, 182, 185, 340
HapII CCGG 3 cut(s) 47, 188, 363
HgaI GACGC 2 cut(s) 59, 109
Hin1I GRCGYC 2 cut(s) 51, 287
Hin1II CATG 2 cut(s) 10, 156
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 3 cut(s) 213, 240, 320
HpaII CCGG 3 cut(s) 47, 188, 363
HphI GGTGA 3 cut(s) 115, 394, 439
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 3 cut(s) 220, 285, 313
Hpy8I GTNNAC 1 cut(s) 256
Hpy99I CGWCG 6 cut(s) 65, 131, 289, 292, 295, 313
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 3 cut(s) 309, 382, 427
HpyCH4IV ACGT 1 cut(s) 287
HpyCH4V TGCA 1 cut(s) 423
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 106
HpySE526I ACGT 1 cut(s) 287
Hsp92I GRCGYC 2 cut(s) 51, 287
Hsp92II CATG 2 cut(s) 10, 156
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 6 cut(s) 60, 79, 201, 376, 395, 419
Lsp1109I GCAGC 2 cut(s) 118, 351
LweI GCATC 1 cut(s) 190
MaeII ACGT 1 cut(s) 287
MaeIII GTNAC 1 cut(s) 121
MboII GAAGA 3 cut(s) 143, 218, 264
MhlI GDGCHC 1 cut(s) 409
MlyI GAGTC 3 cut(s) 207, 234, 314
MmeI TCCRAC 2 cut(s) 291, 308
MnlI CCTC 7 cut(s) 21, 30, 58, 184, 187, 190, 423
MspA1I CMGCKG 1 cut(s) 109
MspI CCGG 3 cut(s) 47, 188, 363
MspR9I CCNGG 3 cut(s) 47, 363, 364
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 2 cut(s) 84, 106
NciI CCSGG 3 cut(s) 47, 363, 364
NlaIII CATG 2 cut(s) 10, 156
NlaIV GGNNCC 3 cut(s) 44, 74, 361
NmuCI GTSAC 1 cut(s) 121
NspI RCATGY 1 cut(s) 156
PcsI WCGNNNNNNNCGW 3 cut(s) 57, 299, 305
PflFI GACNNNGTC 2 cut(s) 289, 307
PkrI GCNGC 5 cut(s) 80, 108, 183, 186, 341
PleI GAGTC 3 cut(s) 207, 234, 314
PpsI GAGTC 3 cut(s) 207, 234, 314
PspN4I GGNNCC 3 cut(s) 44, 74, 361
PspPI GGNCC 2 cut(s) 42, 359
PsyI GACNNNGTC 2 cut(s) 289, 307
SatI GCNGC 5 cut(s) 79, 107, 182, 185, 340
Sau96I GGNCC 2 cut(s) 42, 359
SchI GAGTC 3 cut(s) 207, 234, 314
ScrFI CCNGG 3 cut(s) 47, 363, 364
SduI GDGCHC 1 cut(s) 409
SetI ASST 6 cut(s) 138, 266, 290, 395, 414, 446
SfaNI GCATC 1 cut(s) 190
SinI GGWCC 2 cut(s) 42, 359
SmaI CCCGGG 1 cut(s) 364
SsiI CCGC 7 cut(s) 58, 76, 79, 109, 182, 185, 231
StyD4I CCNGG 3 cut(s) 45, 361, 362
TaaI ACNGT 3 cut(s) 309, 382, 427
TaiI ACGT 1 cut(s) 290
TaqI TCGA 1 cut(s) 440
TaqII GACCGA 1 cut(s) 347
TauI GCSGC 3 cut(s) 81, 184, 187
TscAI CASTG 1 cut(s) 407
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 2 cut(s) 106, 339
Tsp45I GTSAC 1 cut(s) 121
TspMI CCCGGG 1 cut(s) 362
TspRI CASTG 1 cut(s) 407
Tth111I GACNNNGTC 2 cut(s) 289, 307
VpaK11BI GGWCC 2 cut(s) 42, 359
XceI RCATGY 1 cut(s) 156
XmaI CCCGGG 1 cut(s) 362
ZraI GACGTC 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.