RchiOBHm_Chr2g0106371

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017578
Physical Location & Seq
Reverse (-)
17783969 .. 17784865
897 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 897 bp
ATGCGAGATATGATGAAAACCCGTGTGCTGTCAAAAAGATGGCAAGGGCTCTGGGCGTTGAGGAGAGATCTTACTTTTGATTTTTCCCACATGTGCGATGACGTTGTTAAAATTCTTGAGAATGTCAGGTTCAGGAATGACCTTGAATACTATGCCAGGATTAATGAGGACTATGTGAAACGAGTTGATGAATTCATGCAGACTTTTCCAGGAGAGAAGATAGATTTCTTAAGGCTGTTTTACTTTGGTGATACTACCTCTACGGATGAGTCCATTGTTGATAAATGTGTTAGACATGCCATTGCAAAGGGAGTTGAACAGATTGATATGATCTCTGCGTCAATGTTGCCGCATTTCAGGCGTAGGTTTCCTTTTTGGCTTTTTCCTGTATCTAACAAGGGAACTAAAGCTTATTCAACTTTGAAGCACTTGTATCTGCGTTATTTTGTTCTTGCACCACCTCCGGATTTTACTGGATTCCACAATTTAGAATCTCTTACATTGGAGTGCACAATAGTTACTGAAGATTTGTTTAAATATCTGCTCTCCGATCCTGTCACACCGCTAAGAGTGTTGCGCCTGATAGCCTGCCGGTTTGAATTTGATTTAGAGATTGTTAGTCCATCCCTTCACCATTTTGAGATGATCGAGTGTTTGCACCTAGGGACTCTTACAATTTCTGCCATTAAACTCACTGTTTTTGAATATCACTGCTTCTACAAGTATGAGAGGGACCTTTTCCTGAATGCTCCACAGTTGACGAACATGTACTTTCACAAATTGTCTGAGAATCAGATACCTGCTGCAATTTCACAATTCATTGCTACACAGGTTGAAAATCTTAACCTGCGTATAGTTACTGAAAAGGTAAGCAAAAGGTTTTGCATACTTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

298

Amino Acids

35.29

Weight (kDa)

7.13

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 78 - 292 7.6e-14 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 94 - 219 1.2e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017578)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g16490
rosa_chinensis RchiOBHm_Chr2g0106371 RchiOBHm_Chr2g0106391
rosa_laevigata RLG00000017493 RLG00000017495
rosa_roxburghii Rroxscaffold_2G00137230
rosa_rugosa Rorug02G0135100
rosa_samantha Rh2AG186200 Rh2AG186300 Rh2CG191200 Rh2DG192300 Rh2DG192400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 808, 855
AccIII TCCGGA 1 cut(s) 463
AciI CCGC 2 cut(s) 350, 563
AclWI GGATC 1 cut(s) 545
AcsI RAATTY 3 cut(s) 111, 191, 599
AcuI CTGAAG 1 cut(s) 543
AfaI GTAC 1 cut(s) 770
AflII CTTAAG 1 cut(s) 229
AflIII ACRYGT 2 cut(s) 90, 765
AgsI TTSAA 7 cut(s) 146, 317, 417, 424, 599, 704, 836
AjnI CCWGG 2 cut(s) 155, 208
AluBI AGCT 1 cut(s) 410
AluI AGCT 1 cut(s) 410
Alw21I GWGCWC 1 cut(s) 512
Alw44I GTGCAC 1 cut(s) 508
AlwI GGATC 1 cut(s) 545
Aor13HI TCCGGA 1 cut(s) 463
ApaLI GTGCAC 1 cut(s) 508
ApeKI GCWGC 1 cut(s) 803
ApoI RAATTY 3 cut(s) 111, 191, 599
AseI ATTAAT 1 cut(s) 162
AspA2I CCTAGG 1 cut(s) 661
AspLEI GCGC 1 cut(s) 579
AspS9I GGNCC 1 cut(s) 733
AsuHPI GGTGA 2 cut(s) 260, 623
AvaII GGWCC 1 cut(s) 733
AvrII CCTAGG 1 cut(s) 661
BaeGI GKGCMC 1 cut(s) 512
BanII GRGCYC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 512
BbvI GCAGC 1 cut(s) 790
BccI CCATC 2 cut(s) 33, 631
BciT130I CCWGG 2 cut(s) 157, 210
BfaI CTAG 1 cut(s) 662
BfrI CTTAAG 1 cut(s) 229
BfuAI ACCTGC 2 cut(s) 808, 855
BglII AGATCT 1 cut(s) 67
BisI GCNGC 2 cut(s) 350, 804
BlnI CCTAGG 1 cut(s) 661
BlsI GCNGC 2 cut(s) 351, 805
Bme1390I CCNGG 2 cut(s) 157, 210
Bme18I GGWCC 1 cut(s) 733
BmgT120I GGNCC 1 cut(s) 733
BmiI GGNNCC 1 cut(s) 734
BmrFI CCNGG 2 cut(s) 157, 210
BpuEI CTTGAG 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 661
BsaWI WCCGGW 1 cut(s) 463
Bse118I RCCGGY 1 cut(s) 591
Bse1I ACTGG 1 cut(s) 478
Bse3DI GCAATG 2 cut(s) 300, 819
BseAI TCCGGA 1 cut(s) 463
BseBI CCWGG 2 cut(s) 157, 210
BseDI CCNNGG 1 cut(s) 661
BseGI GGATG 2 cut(s) 271, 623
BseMI GCAATG 2 cut(s) 300, 819
BseMII CTCAG 1 cut(s) 777
BseNI ACTGG 1 cut(s) 478
BseRI GAGGAG 1 cut(s) 76
BseSI GKGCMC 1 cut(s) 512
BseXI GCAGC 1 cut(s) 790
BsiHKAI GWGCWC 1 cut(s) 512
BsiSI CCGG 2 cut(s) 464, 592
BslFI GGGAC 2 cut(s) 679, 746
BsmFI GGGAC 2 cut(s) 679, 746
BsmI GAATGC 1 cut(s) 751
Bsp1286I GDGCHC 2 cut(s) 51, 512
Bsp13I TCCGGA 1 cut(s) 463
Bsp143I GATC 4 cut(s) 67, 330, 550, 645
BspACI CCGC 2 cut(s) 350, 563
BspCNI CTCAG 1 cut(s) 778
BspEI TCCGGA 1 cut(s) 463
BspLI GGNNCC 1 cut(s) 734
BspMI ACCTGC 2 cut(s) 808, 855
BspPI GGATC 1 cut(s) 545
BspTI CTTAAG 1 cut(s) 229
BsrDI GCAATG 2 cut(s) 300, 819
BsrFI RCCGGY 1 cut(s) 591
BsrI ACTGG 1 cut(s) 478
BssAI RCCGGY 1 cut(s) 591
BssECI CCNNGG 1 cut(s) 661
BssMI GATC 4 cut(s) 67, 330, 550, 645
BssT1I CCWWGG 1 cut(s) 661
Bst2UI CCWGG 2 cut(s) 157, 210
Bst4CI ACNGT 2 cut(s) 697, 756
BstAFI CTTAAG 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 589
BstDEI CTNAG 2 cut(s) 566, 786
BstF5I GGATG 2 cut(s) 271, 623
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 4 cut(s) 70, 333, 553, 648
BstMBI GATC 4 cut(s) 67, 330, 550, 645
BstMWI GCNNNNNNNGC 1 cut(s) 358
BstNI CCWGG 2 cut(s) 157, 210
BstNSI RCATGY 3 cut(s) 94, 299, 769
BstSCI CCNGG 2 cut(s) 155, 208
BstSLI GKGCMC 1 cut(s) 512
BstV1I GCAGC 1 cut(s) 790
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BtgZI GCGATG 1 cut(s) 111
BtsCI GGATG 2 cut(s) 271, 623
BtsI GCAGTG 1 cut(s) 709
BtsIMutI CAGTG 2 cut(s) 693, 709
BveI ACCTGC 2 cut(s) 808, 855
Cac8I GCNNGC 1 cut(s) 589
CfoI GCGC 1 cut(s) 579
Cfr10I RCCGGY 1 cut(s) 591
Cfr13I GGNCC 1 cut(s) 733
CseI GACGC 1 cut(s) 327
Csp6I GTAC 1 cut(s) 769
CviAII CATG 4 cut(s) 91, 196, 296, 766
CviJI RGCY 5 cut(s) 49, 235, 379, 410, 587
CviKI_1 RGCY 5 cut(s) 49, 235, 379, 410, 587
CviQI GTAC 1 cut(s) 769
DdeI CTNAG 2 cut(s) 566, 786
DpnI GATC 4 cut(s) 69, 332, 552, 647
DpnII GATC 4 cut(s) 67, 330, 550, 645
DraI TTTAAA 1 cut(s) 535
Eco130I CCWWGG 1 cut(s) 661
Eco24I GRGCYC 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 733
Eco57I CTGAAG 1 cut(s) 543
EcoO109I RGGNCCY 1 cut(s) 733
EcoRI GAATTC 1 cut(s) 191
EcoRII CCWGG 2 cut(s) 155, 208
EcoT14I CCWWGG 1 cut(s) 661
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 661
FaeI CATG 4 cut(s) 94, 199, 299, 769
FaqI GGGAC 2 cut(s) 679, 746
FatI CATG 4 cut(s) 90, 195, 295, 765
Fnu4HI GCNGC 2 cut(s) 350, 804
FokI GGATG 2 cut(s) 278, 610
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 2 cut(s) 350, 804
FspBI CTAG 1 cut(s) 662
GlaI GCGC 1 cut(s) 578
GluI GCNGC 2 cut(s) 350, 804
HapII CCGG 2 cut(s) 464, 592
HgaI GACGC 1 cut(s) 327
HhaI GCGC 1 cut(s) 579
Hin1II CATG 4 cut(s) 94, 199, 299, 769
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HincII GTYRAC 1 cut(s) 759
HindII GTYRAC 1 cut(s) 759
HindIII AAGCTT 1 cut(s) 408
HinfI GANTC 5 cut(s) 269, 477, 491, 667, 790
HpaII CCGG 2 cut(s) 464, 592
HphI GGTGA 2 cut(s) 260, 623
Hpy166II GTNNAC 2 cut(s) 510, 759
Hpy188I TCNGA 3 cut(s) 550, 787, 795
Hpy188III TCNNGA 4 cut(s) 116, 133, 464, 742
Hpy8I GTNNAC 2 cut(s) 510, 759
HpyAV CCTTC 1 cut(s) 638
HpyCH4III ACNGT 2 cut(s) 697, 756
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 7 cut(s) 199, 305, 455, 510, 658, 806, 885
HpyF10VI GCNNNNNNNGC 1 cut(s) 358
HpyF3I CTNAG 2 cut(s) 566, 786
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 4 cut(s) 94, 199, 299, 769
HspAI GCGC 1 cut(s) 577
Kpn2I TCCGGA 1 cut(s) 463
Kzo9I GATC 4 cut(s) 67, 330, 550, 645
LmnI GCTCC 1 cut(s) 754
Lsp1109I GCAGC 1 cut(s) 790
MaeI CTAG 1 cut(s) 662
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 3 cut(s) 517, 556, 856
MalI GATC 4 cut(s) 69, 332, 552, 647
MboI GATC 4 cut(s) 67, 330, 550, 645
MboII GAAGA 2 cut(s) 229, 536
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 2 cut(s) 51, 512
MluCI AATT 8 cut(s) 111, 191, 484, 599, 675, 779, 807, 815
MlyI GAGTC 2 cut(s) 278, 661
MnlI CCTC 5 cut(s) 54, 160, 268, 471, 723
MroI TCCGGA 1 cut(s) 463
MseI TTAA 6 cut(s) 108, 162, 230, 534, 687, 843
MslI CAYNNNNRTG 1 cut(s) 505
MspCI CTTAAG 1 cut(s) 229
MspI CCGG 2 cut(s) 464, 592
MspR9I CCNGG 2 cut(s) 157, 210
Mva1269I GAATGC 1 cut(s) 751
MvaI CCWGG 2 cut(s) 157, 210
MwoI GCNNNNNNNGC 1 cut(s) 358
NdeII GATC 4 cut(s) 67, 330, 550, 645
NlaIII CATG 4 cut(s) 94, 199, 299, 769
NlaIV GGNNCC 1 cut(s) 734
NmuCI GTSAC 1 cut(s) 556
NspI RCATGY 3 cut(s) 94, 299, 769
PciI ACATGT 2 cut(s) 90, 765
PctI GAATGC 1 cut(s) 751
PfeI GAWTC 3 cut(s) 477, 491, 790
PfoI TCCNGGA 1 cut(s) 208
PkrI GCNGC 2 cut(s) 351, 805
PleI GAGTC 2 cut(s) 277, 661
PpsI GAGTC 2 cut(s) 277, 661
PpuMI RGGWCCY 1 cut(s) 733
PscI ACATGT 2 cut(s) 90, 765
PshBI ATTAAT 1 cut(s) 162
Psp5II RGGWCCY 1 cut(s) 733
Psp6I CCWGG 2 cut(s) 155, 208
PspGI CCWGG 2 cut(s) 155, 208
PspN4I GGNNCC 1 cut(s) 734
PspPI GGNCC 1 cut(s) 733
PspPPI RGGWCCY 1 cut(s) 733
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 1 cut(s) 770
RsaNI GTAC 1 cut(s) 769
RseI CAYNNNNRTG 1 cut(s) 505
SaqAI TTAA 6 cut(s) 108, 162, 230, 534, 687, 843
SatI GCNGC 2 cut(s) 350, 804
Sau3AI GATC 4 cut(s) 67, 330, 550, 645
Sau96I GGNCC 1 cut(s) 733
SchI GAGTC 2 cut(s) 278, 661
ScrFI CCNGG 2 cut(s) 157, 210
SduI GDGCHC 2 cut(s) 51, 512
SinI GGWCC 1 cut(s) 733
SmiMI CAYNNNNRTG 1 cut(s) 505
SmlI CTYRAG 2 cut(s) 116, 229
SmoI CTYRAG 2 cut(s) 116, 229
Sse9I AATT 8 cut(s) 111, 191, 484, 599, 675, 779, 807, 815
SsiI CCGC 2 cut(s) 350, 563
SspMI CTAG 1 cut(s) 662
StyD4I CCNGG 2 cut(s) 155, 208
StyI CCWWGG 1 cut(s) 661
TaaI ACNGT 2 cut(s) 697, 756
TaiI ACGT 1 cut(s) 105
TaqI TCGA 1 cut(s) 648
TasI AATT 8 cut(s) 111, 191, 484, 599, 675, 779, 807, 815
TatI WGTACW 1 cut(s) 768
TauI GCSGC 1 cut(s) 352
TfiI GAWTC 3 cut(s) 477, 491, 790
Tru1I TTAA 6 cut(s) 108, 162, 230, 534, 687, 843
Tru9I TTAA 6 cut(s) 108, 162, 230, 534, 687, 843
TscAI CASTG 2 cut(s) 700, 716
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 1 cut(s) 803
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 4 cut(s) 29, 184, 204, 808
TspGWI ACGGA 1 cut(s) 278
TspRI CASTG 2 cut(s) 700, 716
Vha464I CTTAAG 1 cut(s) 229
VneI GTGCAC 1 cut(s) 508
VpaK11BI GGWCC 1 cut(s) 733
VspI ATTAAT 1 cut(s) 162
XapI RAATTY 3 cut(s) 111, 191, 599
XceI RCATGY 3 cut(s) 94, 299, 769
XmaJI CCTAGG 1 cut(s) 661
XspI CTAG 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.