RchiOBHm_Chr2g0108061

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012316
Physical Location & Seq
Reverse (-)
19601301 .. 19604469
3169 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1359 bp
ATGTCTATCCCAAATGGGGTTCTACTACACATCGTTTTCTTCTTGTTCTTGGCATCTTTACTTTCGCCGAAATGGGTTGTGCATGGGGAGAGCAACACGAAGAGACCGGATCCTTTGCGCCACCTAAAGAACTACAATGGAACTTTCAATATTCAAAGCAAGGATTACTGGGCTTCTGCGGCATTTACAGGACTCTATGGGTACATTATCGCGGGAGTTTGGTTGCTATGTGGAATGGGATTTGCAATTTTCCTGACCTTCAAGCATCCAAACACTGGGAATTGGCGCATTAAACACTTTTTGGATCGTCACTCTATCCTAATGTTCTTGTTGGTTCTTCTCTTTACTCTGCTAGCCATAGTTGCATCAAGTTCGGTGCTAGCAGTAAATCACAGCTCTATGAAAGGAGCGGAGAAATTGAAGAGGACCATATTCAGCCTAGCTGAAAGTGCTAGCCAAACCATCAGCAAAGTTACAAAAGTAATGAGAAAAATGGAATACATATTACTCCCTTATGACAAAGGCATTTCTATGAGCTTGAATAAGACATCCCATCAACTTGGAAAAGGATTGCGTTCGATTCAAACATTGGTTGACAACAATAGCCATACTCTTAACCAGGCAATTCAAGCCCCATATATAGCTCATCTTGTGATTGTAACGGTCAACTTGGTGGTACTGGTTGTGGCAATAGATGATTCATGTTCAGCCCTAGAGGAATTCGAACGGAATGATAACAACAATACTCTAAGCTCAATCCTGCCATGCTTGGATCCGAAAAACTCAGATGCTCTGTTGGCTGAAATTGGCTCTACCATATATAATTTCATAGATAAGTTGAATTCTAAAGTAGTAGAATTTTCTAGGTTGCTTGGAATGAACGAACAAAATGCTGATTTTGCATTTCTACGTGTATGCAATCCTTTCTCTGAAGGACCTAAATTCAGCTATGAACCAGAACGTTGCCTAAATAGTCACATTACAATCGAAAAACTACCAGATGCCATTGCAGGAGTAACTTGTTACGATGACCAGGACAAGGAAGCATGCAAAAGAAGTGGAAGGCTCCTTCCCCATACCTATTACAACATGGCCAGTGCTTACAGCCAATCCATCCAAGAATTTCTGAAACTATATCCTACCCTGCAGAGCCTAGCCTACTGCACATTTGTCAAGGATGGGATTTCCGAGGTCGTCAGGTATCAATGCAGGCCAATTAAGCTTGCGTTTCGACTGCTATGGGCGTCCATCCTCTCCCTTGCCATTTTCATGGTGTTTTTAGTAGTACTTCTGGTGGCAAGAGCTTTACAAGAGAAAGGTAGAGACTTCACTATATTTACCATCACCCTTTCCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

452

Amino Acids

50.79

Weight (kDa)

8.89

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67550
fragaria_vesca FvH4_1g17730 FvH4_1g17750 FvH4_1g17750
malus_domestica MD02G1186300.v1.1
prunus_persica Prupe.6G220300_v2.0.a1 Prupe.6G220300_v2.0.a1
pyrus_communis pycom02g15130 pycom02g15140
rosa_chinensis RchiOBHm_Chr2g0108061
rosa_laevigata RLG00000017637
rosa_roxburghii Rroxscaffold_2G00135650
rosa_rugosa Rorug02G0149900 Rorug02G0150000
rosa_samantha Rh2AG199200 Rh2BG212000 Rh2CG203800 Rh2DG206800
rosa_wichuraiana Rw2G015810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 275
AccBSI CCGCTC 1 cut(s) 410
AccII CGCG 1 cut(s) 212
AciI CCGC 3 cut(s) 179, 212, 410
AclI AACGTT 1 cut(s) 961
AclWI GGATC 5 cut(s) 104, 117, 312, 767, 780
AcoI YGGCCR 1 cut(s) 1092
AcsI RAATTY 5 cut(s) 719, 841, 857, 941, 1121
AcuI CTGAAG 1 cut(s) 951
AcyI GRCGYC 1 cut(s) 1244
AfaI GTAC 3 cut(s) 203, 678, 1287
AfiI CCNNNNNNNGG 3 cut(s) 16, 275, 1039
AflIII ACRYGT 1 cut(s) 910
AgsI TTSAA 8 cut(s) 148, 155, 262, 421, 541, 584, 629, 841
AjnI CCWGG 2 cut(s) 618, 1032
AluBI AGCT 8 cut(s) 396, 443, 537, 644, 753, 948, 1222, 1304
AluI AGCT 8 cut(s) 396, 443, 537, 644, 753, 948, 1222, 1304
Alw26I GTCTC 2 cut(s) 97, 1317
AlwI GGATC 5 cut(s) 104, 117, 312, 767, 780
AoxI GGCC 2 cut(s) 1092, 1211
ApoI RAATTY 5 cut(s) 719, 841, 857, 941, 1121
AspLEI GCGC 2 cut(s) 120, 288
AspS9I GGNCC 2 cut(s) 426, 935
AsuHPI GGTGA 1 cut(s) 1336
AsuII TTCGAA 1 cut(s) 723
AsuNHI GCTAGC 3 cut(s) 352, 379, 452
AvaII GGWCC 2 cut(s) 426, 935
BalI TGGCCA 1 cut(s) 1094
BamHI GGATCC 2 cut(s) 109, 772
BccI CCATC 6 cut(s) 470, 561, 1121, 1172, 1256, 1349
BcgI CGANNNNNNTGC 4 cut(s) 354, 388, 872, 906
BciT130I CCWGG 2 cut(s) 620, 1034
BcoDI GTCTC 2 cut(s) 97, 1317
BfaI CTAG 7 cut(s) 353, 380, 440, 453, 713, 864, 1154
BfmI CTRYAG 1 cut(s) 1145
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
BmcAI AGTACT 1 cut(s) 1287
Bme1390I CCNGG 2 cut(s) 620, 1034
Bme18I GGWCC 2 cut(s) 426, 935
BmgT120I GGNCC 2 cut(s) 426, 935
BmiI GGNNCC 3 cut(s) 111, 774, 1067
BmrFI CCNGG 2 cut(s) 620, 1034
BmrI ACTGGG 2 cut(s) 178, 285
BmsI GCATC 5 cut(s) 62, 274, 374, 778, 991
BmtI GCTAGC 3 cut(s) 356, 383, 456
BmuI ACTGGG 2 cut(s) 178, 285
Bpu14I TTCGAA 1 cut(s) 723
BsaAI YACGTR 1 cut(s) 911
BsaHI GRCGYC 1 cut(s) 1244
BsaI GGTCTC 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 1188
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 275, 1039
Bse1I ACTGG 4 cut(s) 173, 280, 684, 1095
Bse3DI GCAATG 1 cut(s) 1005
BseBI CCWGG 2 cut(s) 620, 1034
BseDI CCNNGG 1 cut(s) 1188
BseGI GGATG 5 cut(s) 265, 548, 1113, 1183, 1248
BseLI CCNNNNNNNGG 3 cut(s) 16, 275, 1039
BseMI GCAATG 1 cut(s) 1005
BseMII CTCAG 1 cut(s) 798
BseNI ACTGG 4 cut(s) 173, 280, 684, 1095
BsgI GTGCAG 1 cut(s) 1147
Bsh1236I CGCG 1 cut(s) 212
BshFI GGCC 2 cut(s) 1094, 1213
BsiSI CCGG 1 cut(s) 107
BslI CCNNNNNNNGG 3 cut(s) 16, 275, 1039
BsmAI GTCTC 2 cut(s) 97, 1317
BsnI GGCC 2 cut(s) 1094, 1213
Bso31I GGTCTC 1 cut(s) 97
Bsp119I TTCGAA 1 cut(s) 723
Bsp143I GATC 3 cut(s) 109, 304, 772
BspACI CCGC 3 cut(s) 179, 212, 410
BspANI GGCC 2 cut(s) 1094, 1213
BspCNI CTCAG 1 cut(s) 797
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 3 cut(s) 111, 774, 1067
BspMAI CTGCAG 1 cut(s) 1149
BspOI GCTAGC 3 cut(s) 356, 383, 456
BspPI GGATC 5 cut(s) 104, 117, 312, 767, 780
BspT104I TTCGAA 1 cut(s) 723
BspTNI GGTCTC 1 cut(s) 97
BsrBI CCGCTC 1 cut(s) 410
BsrDI GCAATG 1 cut(s) 1005
BsrI ACTGG 4 cut(s) 173, 280, 684, 1095
BssECI CCNNGG 1 cut(s) 1188
BssMI GATC 3 cut(s) 109, 304, 772
BssNI GRCGYC 1 cut(s) 1244
Bst2UI CCWGG 2 cut(s) 620, 1034
Bst4CI ACNGT 1 cut(s) 664
Bst6I CTCTTC 2 cut(s) 95, 416
BstACI GRCGYC 1 cut(s) 1244
BstBAI YACGTR 1 cut(s) 911
BstBI TTCGAA 1 cut(s) 723
BstC8I GCNNGC 6 cut(s) 354, 381, 454, 1048, 1211, 1224
BstDEI CTNAG 2 cut(s) 749, 784
BstF5I GGATG 5 cut(s) 265, 548, 1113, 1183, 1248
BstFNI CGCG 1 cut(s) 212
BstHHI GCGC 2 cut(s) 120, 288
BstKTI GATC 3 cut(s) 112, 307, 775
BstMAI GTCTC 2 cut(s) 97, 1317
BstMBI GATC 3 cut(s) 109, 304, 772
BstMWI GCNNNNNNNGC 7 cut(s) 179, 362, 449, 629, 797, 899, 1219
BstNI CCWGG 2 cut(s) 620, 1034
BstNSI RCATGY 1 cut(s) 1050
BstSCI CCNGG 2 cut(s) 618, 1032
BstSFI CTRYAG 1 cut(s) 1145
BstUI CGCG 1 cut(s) 212
BstX2I RGATCY 2 cut(s) 109, 772
BstXI CCANNNNNNTGG 2 cut(s) 560, 1270
BstYI RGATCY 2 cut(s) 109, 772
BsuRI GGCC 2 cut(s) 1094, 1213
BtsCI GGATG 5 cut(s) 265, 548, 1113, 1183, 1248
BtsIMutI CAGTG 2 cut(s) 273, 1102
Cac8I GCNNGC 6 cut(s) 354, 381, 454, 1048, 1211, 1224
CfoI GCGC 2 cut(s) 120, 288
Cfr13I GGNCC 2 cut(s) 426, 935
CseI GACGC 1 cut(s) 1233
Csp6I GTAC 3 cut(s) 202, 677, 1286
CspCI CAANNNNNGTGG 2 cut(s) 1039, 1074
CviAII CATG 6 cut(s) 83, 702, 765, 1047, 1090, 1270
CviQI GTAC 3 cut(s) 202, 677, 1286
DdeI CTNAG 2 cut(s) 749, 784
DpnI GATC 3 cut(s) 111, 306, 774
DpnII GATC 3 cut(s) 109, 304, 772
EaeI YGGCCR 1 cut(s) 1092
Eam1104I CTCTTC 2 cut(s) 95, 416
EarI CTCTTC 2 cut(s) 95, 416
Eco31I GGTCTC 1 cut(s) 97
Eco47I GGWCC 2 cut(s) 426, 935
Eco57I CTGAAG 1 cut(s) 951
EcoO109I RGGNCCY 1 cut(s) 935
EcoRI GAATTC 2 cut(s) 719, 841
EcoRII CCWGG 2 cut(s) 618, 1032
FaeI CATG 6 cut(s) 86, 705, 768, 1050, 1093, 1273
FatI CATG 6 cut(s) 82, 701, 764, 1046, 1089, 1269
FauI CCCGC 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 5 cut(s) 252, 535, 1100, 1190, 1235
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 7 cut(s) 353, 380, 440, 453, 713, 864, 1154
GlaI GCGC 2 cut(s) 119, 287
GluI GCNGC 1 cut(s) 180
HaeIII GGCC 2 cut(s) 1094, 1213
HapII CCGG 1 cut(s) 107
HgaI GACGC 1 cut(s) 1233
HhaI GCGC 2 cut(s) 120, 288
Hin1I GRCGYC 1 cut(s) 1244
Hin1II CATG 6 cut(s) 86, 705, 768, 1050, 1093, 1273
Hin6I GCGC 2 cut(s) 118, 286
HinP1I GCGC 2 cut(s) 118, 286
HincII GTYRAC 2 cut(s) 595, 667
HindII GTYRAC 2 cut(s) 595, 667
HindIII AAGCTT 1 cut(s) 1220
HinfI GANTC 3 cut(s) 192, 580, 698
HpaII CCGG 1 cut(s) 107
HphI GGTGA 1 cut(s) 1336
Hpy166II GTNNAC 2 cut(s) 595, 667
Hpy188I TCNGA 5 cut(s) 777, 787, 931, 1128, 1189
Hpy188III TCNNGA 1 cut(s) 253
Hpy8I GTNNAC 2 cut(s) 595, 667
HpyAV CCTTC 4 cut(s) 268, 926, 1056, 1079
HpyCH4III ACNGT 1 cut(s) 664
HpyCH4IV ACGT 2 cut(s) 910, 961
HpyF10VI GCNNNNNNNGC 7 cut(s) 179, 362, 449, 629, 797, 899, 1219
HpyF3I CTNAG 2 cut(s) 749, 784
HpySE526I ACGT 2 cut(s) 910, 961
Hsp92I GRCGYC 1 cut(s) 1244
Hsp92II CATG 6 cut(s) 86, 705, 768, 1050, 1093, 1273
HspAI GCGC 2 cut(s) 118, 286
Kzo9I GATC 3 cut(s) 109, 304, 772
LmnI GCTCC 2 cut(s) 407, 1071
LweI GCATC 5 cut(s) 62, 274, 374, 778, 991
MaeI CTAG 7 cut(s) 353, 380, 440, 453, 713, 864, 1154
MaeII ACGT 2 cut(s) 910, 961
MaeIII GTNAC 6 cut(s) 308, 472, 658, 974, 1015, 1022
MalI GATC 3 cut(s) 111, 306, 774
MbiI CCGCTC 1 cut(s) 410
MboI GATC 3 cut(s) 109, 304, 772
MboII GAAGA 4 cut(s) 31, 112, 329, 433
MflI RGATCY 2 cut(s) 109, 772
MlsI TGGCCA 1 cut(s) 1094
MluNI TGGCCA 1 cut(s) 1094
MlyI GAGTC 1 cut(s) 186
MnlI CCTC 4 cut(s) 417, 709, 1183, 1262
Mox20I TGGCCA 1 cut(s) 1094
MscI TGGCCA 1 cut(s) 1094
MseI TTAA 3 cut(s) 291, 615, 1218
MslI CAYNNNNRTG 2 cut(s) 530, 1268
Msp20I TGGCCA 1 cut(s) 1094
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 2 cut(s) 620, 1034
MvaI CCWGG 2 cut(s) 620, 1034
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 7 cut(s) 179, 362, 449, 629, 797, 899, 1219
NdeII GATC 3 cut(s) 109, 304, 772
NheI GCTAGC 3 cut(s) 352, 379, 452
NlaIII CATG 6 cut(s) 86, 705, 768, 1050, 1093, 1273
NlaIV GGNNCC 3 cut(s) 111, 774, 1067
NmuCI GTSAC 2 cut(s) 308, 974
NspI RCATGY 1 cut(s) 1050
NspV TTCGAA 1 cut(s) 723
PaeI GCATGC 1 cut(s) 1050
PfeI GAWTC 2 cut(s) 580, 698
PflMI CCANNNNNTGG 1 cut(s) 275
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
Ppu21I YACGTR 1 cut(s) 911
PpuMI RGGWCCY 1 cut(s) 935
Psp1406I AACGTT 1 cut(s) 961
Psp5II RGGWCCY 1 cut(s) 935
Psp6I CCWGG 2 cut(s) 618, 1032
PspGI CCWGG 2 cut(s) 618, 1032
PspN4I GGNNCC 3 cut(s) 111, 774, 1067
PspPI GGNCC 2 cut(s) 426, 935
PspPPI RGGWCCY 1 cut(s) 935
PstI CTGCAG 1 cut(s) 1149
PsuI RGATCY 2 cut(s) 109, 772
RsaI GTAC 3 cut(s) 203, 678, 1287
RsaNI GTAC 3 cut(s) 202, 677, 1286
RseI CAYNNNNRTG 2 cut(s) 530, 1268
SaqAI TTAA 3 cut(s) 291, 615, 1218
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 3 cut(s) 109, 304, 772
Sau96I GGNCC 2 cut(s) 426, 935
ScaI AGTACT 1 cut(s) 1287
SchI GAGTC 1 cut(s) 186
ScrFI CCNGG 2 cut(s) 620, 1034
SfaNI GCATC 5 cut(s) 62, 274, 374, 778, 991
SfcI CTRYAG 1 cut(s) 1145
SfuI TTCGAA 1 cut(s) 723
SinI GGWCC 2 cut(s) 426, 935
SmiMI CAYNNNNRTG 2 cut(s) 530, 1268
SphI GCATGC 1 cut(s) 1050
SsiI CCGC 3 cut(s) 179, 212, 410
SspI AATATT 1 cut(s) 151
SspMI CTAG 7 cut(s) 353, 380, 440, 453, 713, 864, 1154
StyD4I CCNGG 2 cut(s) 618, 1032
TaaI ACNGT 1 cut(s) 664
TaiI ACGT 2 cut(s) 913, 964
TaqI TCGA 4 cut(s) 578, 723, 987, 1231
TatI WGTACW 1 cut(s) 1285
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 2 cut(s) 580, 698
Tru1I TTAA 3 cut(s) 291, 615, 1218
Tru9I TTAA 3 cut(s) 291, 615, 1218
TscAI CASTG 2 cut(s) 280, 1102
TseFI GTSAC 2 cut(s) 308, 974
Tsp45I GTSAC 2 cut(s) 308, 974
TspDTI ATGAA 6 cut(s) 416, 690, 817, 893, 966, 1258
TspGWI ACGGA 1 cut(s) 742
TspRI CASTG 2 cut(s) 280, 1102
Van91I CCANNNNNTGG 1 cut(s) 275
VpaK11BI GGWCC 2 cut(s) 426, 935
XapI RAATTY 5 cut(s) 719, 841, 857, 941, 1121
XceI RCATGY 1 cut(s) 1050
XspI CTAG 7 cut(s) 353, 380, 440, 453, 713, 864, 1154
ZrmI AGTACT 1 cut(s) 1287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.