RchiOBHm_Chr2g0112761

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006271
Physical Location & Seq
Forward (+)
24813152 .. 24819972
6821 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1260 bp
ATGAAAGAACTCCGAGTCTGGACTATACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTGAAATGGAAGAGTTAAGAAAGCTAGAAGAGGTACAGAGAACACTGACGTTTCTTCAATCGCGAGGCATCACAAATGACAATGACGACTGTAATTGCTTCCTTTCCAAGCTCACCCTCCTCCTGGTACGACCTTGTGGGGAGCTTGATTTGGAAAACAAGTGTGCTTTGGTTTCTGAGTATATGCCAAAGATATCTGCTGCAATTCTTGATGAAGCATCTAGCAACCTCACCGGCAAAGGCCATGAAGAAAATTGTGTTGAAAATTCTTTGCCCCTTGACTTTGGCCACAAGTCAGAGTCTGGTCCATTGCAAACTAATTTTGAAAAAATAGCTATGGTGGGACTGGATGCAATGCAACGAGCAAATTCAACCCTCGAAGATTTTTGCAGGTCTTATTTTATGTTTCATGGCATGGATATAAACAAACCACAATCAGTATTCCAATATCTTCCTATGCTTTCATTTGTAGAAAGTTACATTTATCAGCTTGACGATTTGAATGAGAAGACAGTGCAAGCATCAAGCAGTGAAATGACCATTTCAGAAAGAGGAACTGCAGTGGAAGGTCATGGGAAAATTTCTCAGTTTTCAAATGTGTTTAAAAGTGATCCTTTCAGACCACTCGAATGTCTACTTGAATCCCATGTCCTTTTGACAAAGAGAATGCAAGATGAATTCAAGTGTGGAGAAGAGTATTGGGCTCTGGAAAGAAAACTTTGTCATGCACTTAATAATAAATTGCAGATCTCAGTTGAAGATGCAATGAAGGCAATTCATCTCAAATCCTTTGATTATCGAGTGCTGAATCTTTTACTGTACCAGTTGAGAGGAGAAAAGGTCAATGAGTTGCACATGGAATTTCTGTCTGTCTCAGAATTCCTAGTTGAGGTAGCCGATGATTTGTTTGACTATGAGGAGGATGTATTAGAAAATAATTTCAATATATTGCGCATGTTTGTCAGAATATATGGAGCTTCTGCCCCTACAGTGCTGGCAAAATACATAACTGAGGCTGAAGAGAAGTACAATCAAGTGTTGAAAGCGTTGGATCCTCAGCTGTCTATGCATTACCAGAGAAGATGTGTAGAAGCCACTAAAGAAGGAGGGAATATGTCAGGGCATCCTCTCGGAACATGGAGCATACCACCTCTAATATTAGATGAGGAATTCTATCGATGCAGTCTATTAGATACAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

419

Amino Acids

48.42

Weight (kDa)

4.99

Isoelectric Point (pI)

38.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1010
Acc36I ACCTGC 1 cut(s) 438
AccI GTMKAC 1 cut(s) 691
AccII CGCG 1 cut(s) 121
AclWI GGATC 3 cut(s) 662, 1103, 1116
AcoI YGGCCR 1 cut(s) 343
AcsI RAATTY 7 cut(s) 322, 424, 636, 734, 917, 935, 1226
AcuI CTGAAG 1 cut(s) 1095
AfaI GTAC 4 cut(s) 93, 186, 878, 1085
AfiI CCNNNNNNNGG 2 cut(s) 181, 946
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 7 cut(s) 82, 169, 202, 392, 547, 1034, 1117
AluI AGCT 7 cut(s) 82, 169, 202, 392, 547, 1034, 1117
Alw26I GTCTC 1 cut(s) 934
AlwI GGATC 3 cut(s) 662, 1103, 1116
AlwNI CAGNNNCTG 1 cut(s) 359
AoxI GGCC 2 cut(s) 298, 343
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 7 cut(s) 322, 424, 636, 734, 917, 935, 1226
AspLEI GCGC 1 cut(s) 1011
AspS9I GGNCC 1 cut(s) 362
AsuHPI GGTGA 2 cut(s) 163, 280
AvaII GGWCC 1 cut(s) 362
BalI TGGCCA 1 cut(s) 345
BamHI GGATCC 1 cut(s) 1108
BanII GRGCYC 1 cut(s) 763
BbsI GAAGAC 1 cut(s) 572
BbvCI CCTCAGC 1 cut(s) 1113
BbvI GCAGC 1 cut(s) 244
BciT130I CCWGG 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 934
BfaI CTAG 3 cut(s) 83, 279, 941
BfmI CTRYAG 2 cut(s) 615, 1044
BfuAI ACCTGC 1 cut(s) 438
BglII AGATCT 1 cut(s) 804
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 182
Bme18I GGWCC 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 1 cut(s) 1110
BmrFI CCNGG 1 cut(s) 182
BmsI GCATC 7 cut(s) 135, 284, 397, 587, 808, 1189, 1226
BpiI GAAGAC 1 cut(s) 572
Bpu10I CCTNAGC 1 cut(s) 1113
Bsa29I ATCGAT 1 cut(s) 1234
BsaXI ACNNNNNCTCC 2 cut(s) 882, 912
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 946
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 2 cut(s) 408, 880
Bse3DI GCAATG 3 cut(s) 365, 417, 828
BseBI CCWGG 1 cut(s) 182
BseCI ATCGAT 1 cut(s) 1234
BseGI GGATG 3 cut(s) 412, 985, 1180
BseLI CCNNNNNNNGG 2 cut(s) 181, 946
BseMI GCAATG 3 cut(s) 365, 417, 828
BseMII CTCAG 6 cut(s) 225, 656, 822, 945, 1059, 1127
BseNI ACTGG 2 cut(s) 408, 880
BseRI GAGGAG 3 cut(s) 167, 903, 989
BseXI GCAGC 1 cut(s) 244
Bsh1236I CGCG 1 cut(s) 121
BshFI GGCC 2 cut(s) 300, 345
BshVI ATCGAT 1 cut(s) 1234
BsiSI CCGG 1 cut(s) 291
BslFI GGGAC 1 cut(s) 414
BslI CCNNNNNNNGG 2 cut(s) 181, 946
BsmAI GTCTC 1 cut(s) 934
BsmFI GGGAC 1 cut(s) 414
BsmI GAATGC 1 cut(s) 729
BsnI GGCC 2 cut(s) 300, 345
Bsp1286I GDGCHC 1 cut(s) 763
Bsp143I GATC 3 cut(s) 667, 804, 1108
Bsp68I TCGCGA 1 cut(s) 121
BspANI GGCC 2 cut(s) 300, 345
BspCNI CTCAG 6 cut(s) 226, 655, 821, 944, 1060, 1126
BspDI ATCGAT 1 cut(s) 1234
BspFNI CGCG 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 1110
BspMAI CTGCAG 1 cut(s) 619
BspMI ACCTGC 1 cut(s) 438
BspPI GGATC 3 cut(s) 662, 1103, 1116
BsrDI GCAATG 3 cut(s) 365, 417, 828
BsrFI RCCGGY 1 cut(s) 290
BsrI ACTGG 2 cut(s) 408, 880
BssAI RCCGGY 1 cut(s) 290
BssMI GATC 3 cut(s) 667, 804, 1108
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 4 cut(s) 149, 571, 876, 1048
Bst6I CTCTTC 4 cut(s) 63, 81, 744, 1071
BstC8I GCNNGC 2 cut(s) 576, 1053
BstDEI CTNAG 6 cut(s) 234, 642, 808, 931, 1068, 1113
BstENI CCTNNNNNAGG 1 cut(s) 944
BstF5I GGATG 3 cut(s) 412, 985, 1180
BstFNI CGCG 1 cut(s) 121
BstHHI GCGC 1 cut(s) 1011
BstKTI GATC 3 cut(s) 670, 807, 1111
BstMAI GTCTC 1 cut(s) 934
BstMBI GATC 3 cut(s) 667, 804, 1108
BstMWI GCNNNNNNNGC 2 cut(s) 827, 1123
BstNI CCWGG 1 cut(s) 182
BstNSI RCATGY 1 cut(s) 1015
BstSCI CCNGG 1 cut(s) 180
BstSFI CTRYAG 2 cut(s) 615, 1044
BstUI CGCG 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 244
BstV2I GAAGAC 1 cut(s) 572
BstX2I RGATCY 2 cut(s) 804, 1108
BstYI RGATCY 2 cut(s) 804, 1108
Bsu15I ATCGAT 1 cut(s) 1234
BsuRI GGCC 2 cut(s) 300, 345
BsuTUI ATCGAT 1 cut(s) 1234
BtsCI GGATG 3 cut(s) 412, 985, 1180
BtsI GCAGTG 2 cut(s) 592, 624
BtsIMutI CAGTG 5 cut(s) 101, 576, 592, 624, 1053
BtuMI TCGCGA 1 cut(s) 121
BveI ACCTGC 1 cut(s) 438
Cac8I GCNNGC 2 cut(s) 576, 1053
CaiI CAGNNNCTG 1 cut(s) 359
CfoI GCGC 1 cut(s) 1011
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 1 cut(s) 362
ClaI ATCGAT 1 cut(s) 1234
Csp6I GTAC 4 cut(s) 92, 185, 877, 1084
CviAII CATG 9 cut(s) 302, 467, 472, 629, 704, 782, 913, 1012, 1194
CviQI GTAC 4 cut(s) 92, 185, 877, 1084
DdeI CTNAG 6 cut(s) 234, 642, 808, 931, 1068, 1113
DpnI GATC 3 cut(s) 669, 806, 1110
DpnII GATC 3 cut(s) 667, 804, 1108
DraI TTTAAA 1 cut(s) 661
EaeI YGGCCR 1 cut(s) 343
Eam1104I CTCTTC 4 cut(s) 63, 81, 744, 1071
EarI CTCTTC 4 cut(s) 63, 81, 744, 1071
Eco24I GRGCYC 1 cut(s) 763
Eco32I GATATC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 362
Eco57I CTGAAG 1 cut(s) 1095
EcoNI CCTNNNNNAGG 1 cut(s) 944
EcoRI GAATTC 3 cut(s) 734, 935, 1226
EcoRII CCWGG 1 cut(s) 180
EcoRV GATATC 1 cut(s) 252
EcoT22I ATGCAT 1 cut(s) 1128
EcoT38I GRGCYC 1 cut(s) 763
FaeI CATG 9 cut(s) 305, 470, 475, 632, 707, 785, 916, 1015, 1197
FalI AAGNNNNNCTT 2 cut(s) 655, 687
FaqI GGGAC 1 cut(s) 414
FatI CATG 9 cut(s) 301, 466, 471, 628, 703, 781, 912, 1011, 1193
FblI GTMKAC 1 cut(s) 691
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 3 cut(s) 419, 992, 1167
FriOI GRGCYC 1 cut(s) 763
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 3 cut(s) 83, 279, 941
FspI TGCGCA 1 cut(s) 1010
GlaI GCGC 1 cut(s) 1010
GluI GCNGC 1 cut(s) 258
HaeIII GGCC 2 cut(s) 300, 345
HapII CCGG 1 cut(s) 291
HhaI GCGC 1 cut(s) 1011
Hin1II CATG 9 cut(s) 305, 470, 475, 632, 707, 785, 916, 1015, 1197
Hin6I GCGC 1 cut(s) 1009
HinP1I GCGC 1 cut(s) 1009
HinfI GANTC 4 cut(s) 15, 356, 698, 865
HpaII CCGG 1 cut(s) 291
HphI GGTGA 2 cut(s) 163, 280
Hpy166II GTNNAC 1 cut(s) 692
Hpy188I TCNGA 8 cut(s) 14, 235, 355, 604, 677, 934, 1022, 1190
Hpy188III TCNNGA 4 cut(s) 19, 120, 266, 764
Hpy8I GTNNAC 1 cut(s) 692
HpyAV CCTTC 3 cut(s) 617, 820, 1154
HpyCH4III ACNGT 4 cut(s) 149, 571, 876, 1048
HpyCH4IV ACGT 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 2 cut(s) 827, 1123
HpyF3I CTNAG 6 cut(s) 234, 642, 808, 931, 1068, 1113
HpySE526I ACGT 1 cut(s) 107
Hsp92II CATG 9 cut(s) 305, 470, 475, 632, 707, 785, 916, 1015, 1197
HspAI GCGC 1 cut(s) 1009
Kzo9I GATC 3 cut(s) 667, 804, 1108
LmnI GCTCC 3 cut(s) 199, 1031, 1197
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 7 cut(s) 135, 284, 397, 587, 808, 1189, 1226
MaeI CTAG 3 cut(s) 83, 279, 941
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 1 cut(s) 533
MalI GATC 3 cut(s) 669, 806, 1110
MboI GATC 3 cut(s) 667, 804, 1108
MflI RGATCY 2 cut(s) 804, 1108
MhlI GDGCHC 1 cut(s) 763
MlsI TGGCCA 1 cut(s) 345
MluNI TGGCCA 1 cut(s) 345
MlyI GAGTC 2 cut(s) 24, 365
MmeI TCCRAC 1 cut(s) 1086
Mox20I TGGCCA 1 cut(s) 345
Mph1103I ATGCAT 1 cut(s) 1128
MscI TGGCCA 1 cut(s) 345
MseI TTAA 3 cut(s) 74, 660, 789
MslI CAYNNNNRTG 1 cut(s) 685
Msp20I TGGCCA 1 cut(s) 345
MspA1I CMGCKG 1 cut(s) 1117
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 1 cut(s) 182
Mva1269I GAATGC 1 cut(s) 729
MvaI CCWGG 1 cut(s) 182
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 2 cut(s) 827, 1123
NdeII GATC 3 cut(s) 667, 804, 1108
NlaIII CATG 9 cut(s) 305, 470, 475, 632, 707, 785, 916, 1015, 1197
NlaIV GGNNCC 1 cut(s) 1110
NruI TCGCGA 1 cut(s) 121
NsbI TGCGCA 1 cut(s) 1010
NsiI ATGCAT 1 cut(s) 1128
NspI RCATGY 1 cut(s) 1015
PctI GAATGC 1 cut(s) 729
PfeI GAWTC 2 cut(s) 698, 865
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 2 cut(s) 23, 364
PpsI GAGTC 2 cut(s) 23, 364
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 1110
PspPI GGNCC 1 cut(s) 362
PstI CTGCAG 1 cut(s) 619
PstNI CAGNNNCTG 1 cut(s) 359
PsuI RGATCY 2 cut(s) 804, 1108
PvuII CAGCTG 1 cut(s) 1117
RruI TCGCGA 1 cut(s) 121
RsaI GTAC 4 cut(s) 93, 186, 878, 1085
RsaNI GTAC 4 cut(s) 92, 185, 877, 1084
RseI CAYNNNNRTG 1 cut(s) 685
SaqAI TTAA 3 cut(s) 74, 660, 789
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 3 cut(s) 667, 804, 1108
Sau96I GGNCC 1 cut(s) 362
SchI GAGTC 2 cut(s) 24, 365
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 1 cut(s) 763
SfaNI GCATC 7 cut(s) 135, 284, 397, 587, 808, 1189, 1226
SfcI CTRYAG 2 cut(s) 615, 1044
SinI GGWCC 1 cut(s) 362
SmiMI CAYNNNNRTG 1 cut(s) 685
SspI AATATT 1 cut(s) 1215
SspMI CTAG 3 cut(s) 83, 279, 941
StyD4I CCNGG 1 cut(s) 180
TaaI ACNGT 4 cut(s) 149, 571, 876, 1048
TaiI ACGT 1 cut(s) 110
TaqI TCGA 4 cut(s) 435, 684, 856, 1234
TatI WGTACW 1 cut(s) 1083
TfiI GAWTC 2 cut(s) 698, 865
Tru1I TTAA 3 cut(s) 74, 660, 789
Tru9I TTAA 3 cut(s) 74, 660, 789
TscAI CASTG 5 cut(s) 108, 576, 592, 624, 1053
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 8 cut(s) 17, 285, 318, 455, 510, 747, 824, 839
TspRI CASTG 5 cut(s) 108, 576, 592, 624, 1053
VpaK11BI GGWCC 1 cut(s) 362
XagI CCTNNNNNAGG 1 cut(s) 944
XapI RAATTY 7 cut(s) 322, 424, 636, 734, 917, 935, 1226
XceI RCATGY 1 cut(s) 1015
XmiI GTMKAC 1 cut(s) 691
XspI CTAG 3 cut(s) 83, 279, 941
Zsp2I ATGCAT 1 cut(s) 1128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.