Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012259

Physical Location & Seq

Genomic Coordinates Forward (+)

33079332 .. 33081199

Gene Structure 1868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGAGGGCGTAGAAAATGGGGGAAAAGCCACGCAATGTCCGAACTGCTCGGCAGCAGTAGTACTATCGAAGAGTGCCCAGAAGAAGGTGTTGAAGCAGCAGAGGTGGGAGGCGAAGAAGGCGGAGAAGAAGGCCCAGGAAAAAGAGCACAAGAAGAGAGAGGGAGAGCGGAAGCGGAAGGAATGGGAGGAGACTCTGGCGAGCTTGAGCGAAGACGAGAGGTTGAAGATGATAGAGTCCAGGAAGAGCTTGAGGAAGGAGAGAATGGACAAGAGGTCAGAGGAGCGAGACCGAAAGACGGAGCGGCTCACCAGAGCCAAGGAGTGTGGACAGAAGATTGTGATTGATCTCGAGTTCTCTCACCTCATGACGCCCTCTGAGACCCACAGCCTCGTTCAACAGATTATGTATTGTTATGCGGTGAATGGGAGGAGTAGGGAGCCGTGTCATCTGTGGCTGACTGGGTGTAAAGGAGAGATGGGTACGCAGTTGCGCAGGCTGCCCGGGTTTGATAAGTGGAGTGTTGAGAGGGAAGATGGATCCTACATTGAGGCTTTGGAGAGTGAGAAGAACAATCTGGTGTATCTGACCGCCGATTCGGAGAATGTAGTGGATGATCTTGATCGGAGCAAGATATATATTATTGGGGGATTGGTGGATCGGAATAGGTGGAAAGGAATTACAATGAAGAAAGCAGAGGAGCAGGGAATCCAAACTGCAAAGCTCCCCATCGGGAAGTACTTGAACATGTGCAGTTCCCAGGTCCTGACTGTGAATCAAGTGGTTGAGATTCTCCTCAAGTACTTGGAAACCAAAGATTGGAAGGCTTCCTTCTTCCAAGTGATTCCACAGCGAAAACGATTGCAAGCAGCTGATGATTCATCAGAGGAACCTCAACAACAGAAAGTAGAAGGAAGGGGAAAAAGTGAAGAGAAAGATGATGATCAATATGAAAGGCCATTTGCAGTCACATCCACATTGCTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_m1G_MT

Protein Analysis

329

Amino Acids

38.07

Weight (kDa)

8.76

Isoelectric Point (pI)

51.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47680
fragaria_vesca	FvH4_1g24140 FvH4_1g24140
malus_domestica	MD10G1339200.v1.1
prunus_persica	Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1 Prupe.4G003700_v2.0.a1
pyrus_communis	pycom10g28880
rosa_chinensis	RchiOBHm_Chr2g0120371
rosa_laevigata	RLG00000018553
rosa_roxburghii	Rroxscaffold_2G00123460
rosa_rugosa	Rorug02G0229100
rosa_samantha	Rh2AG285100 Rh2BG296200 Rh2CG273900 Rh2DG310100
rosa_wichuraiana	Rw2G022880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	494
AccB7I	CCANNNNNTGG	1 cut(s)	819
AccBSI	CCGCTC	2 cut(s)	169, 304
AciI	CCGC	6 cut(s)	122, 169, 175, 304, 419, 591
AclWI	GGATC	3 cut(s)	534, 547, 666
AcuI	CTGAAG	1 cut(s)	968
AcyI	GRCGYC	1 cut(s)	371
AfaI	GTAC	4 cut(s)	63, 484, 740, 803
AfiI	CCNNNNNNNGG	3 cut(s)	85, 298, 819
AflIII	ACRYGT	1 cut(s)	747
AgsI	TTSAA	4 cut(s)	94, 226, 398, 745
AhdI	GACNNNNNGTC	1 cut(s)	274
AjnI	CCWGG	3 cut(s)	135, 239, 759
AluBI	AGCT	4 cut(s)	204, 249, 724, 872
AluI	AGCT	4 cut(s)	204, 249, 724, 872
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	3 cut(s)	185, 282, 374
AlwI	GGATC	3 cut(s)	534, 547, 666
AlwNI	CAGNNNCTG	1 cut(s)	766
Ama87I	CYCGRG	2 cut(s)	350, 503
AoxI	GGCC	2 cut(s)	132, 956
ApeKI	GCWGC	4 cut(s)	53, 97, 499, 869
ArsI	GACNNNNNNTTYG	2 cut(s)	580, 612
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	2 cut(s)	133, 763
AsuC2I	CCSGG	2 cut(s)	504, 505
AsuHPI	GGTGA	3 cut(s)	301, 353, 433
AvaI	CYCGRG	2 cut(s)	350, 503
AvaII	GGWCC	1 cut(s)	763
BaeGI	GKGCMC	1 cut(s)	79
BamHI	GGATCC	1 cut(s)	539
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	4 cut(s)	65, 109, 486, 881
BccI	CCATC	3 cut(s)	472, 530, 737
BceAI	ACGGC	1 cut(s)	427
BciT130I	CCWGG	3 cut(s)	137, 241, 761
BclI	TGATCA	1 cut(s)	943
BcnI	CCSGG	2 cut(s)	504, 505
BcoDI	GTCTC	3 cut(s)	185, 282, 374
BisI	GCNGC	5 cut(s)	54, 98, 305, 500, 870
BlsI	GCNGC	5 cut(s)	55, 99, 306, 501, 871
BmcAI	AGTACT	3 cut(s)	63, 740, 803
Bme1390I	CCNGG	5 cut(s)	137, 241, 504, 505, 761
Bme18I	GGWCC	1 cut(s)	763
BmeRI	GACNNNNNGTC	1 cut(s)	274
BmeT110I	CYCGRG	2 cut(s)	350, 503
BmgT120I	GGNCC	2 cut(s)	133, 763
BmiI	GGNNCC	3 cut(s)	441, 541, 891
BmrFI	CCNGG	5 cut(s)	137, 241, 504, 505, 761
BmrI	ACTGGG	1 cut(s)	471
BmuI	ACTGGG	1 cut(s)	471
BpiI	GAAGAC	1 cut(s)	219
BpuEI	CTTGAG	3 cut(s)	226, 271, 782
BpuMI	CCSGG	2 cut(s)	504, 505
BsaBI	GATNNNNATC	2 cut(s)	621, 942
BsaHI	GRCGYC	1 cut(s)	371
BsaI	GGTCTC	2 cut(s)	282, 374
BsaJI	CCNNGG	4 cut(s)	135, 318, 503, 759
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 298, 819
Bse1I	ACTGG	1 cut(s)	466
Bse3DI	GCAATG	2 cut(s)	41, 977
Bse8I	GATNNNNATC	2 cut(s)	621, 942
BseBI	CCWGG	3 cut(s)	137, 241, 761
BseDI	CCNNGG	4 cut(s)	135, 318, 503, 759
BseGI	GGATG	2 cut(s)	619, 971
BseJI	GATNNNNATC	2 cut(s)	621, 942
BseLI	CCNNNNNNNGG	3 cut(s)	85, 298, 819
BseMI	GCAATG	2 cut(s)	41, 977
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	466
BseRI	GAGGAG	5 cut(s)	203, 296, 445, 713, 785
BseSI	GKGCMC	1 cut(s)	79
BseXI	GCAGC	4 cut(s)	65, 109, 486, 881
BsgI	GTGCAG	1 cut(s)	772
BshFI	GGCC	2 cut(s)	134, 958
BsiHKAI	GWGCWC	1 cut(s)	150
BsiHKCI	CYCGRG	2 cut(s)	350, 503
BsiSI	CCGG	1 cut(s)	504
BslI	CCNNNNNNNGG	3 cut(s)	85, 298, 819
BsmAI	GTCTC	3 cut(s)	185, 282, 374
BsnI	GGCC	2 cut(s)	134, 958
Bso31I	GGTCTC	2 cut(s)	282, 374
BsoBI	CYCGRG	2 cut(s)	350, 503
Bsp1286I	GDGCHC	2 cut(s)	79, 150
Bsp143I	GATC	6 cut(s)	346, 539, 616, 622, 658, 943
BspACI	CCGC	6 cut(s)	122, 169, 175, 304, 419, 591
BspANI	GGCC	2 cut(s)	134, 958
BspCNI	CTCAG	1 cut(s)	370
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	3 cut(s)	441, 541, 891
BspPI	GGATC	3 cut(s)	534, 547, 666
BspQI	GCTCTTC	1 cut(s)	239
BspTNI	GGTCTC	2 cut(s)	282, 374
BsrBI	CCGCTC	2 cut(s)	169, 304
BsrDI	GCAATG	2 cut(s)	41, 977
BsrI	ACTGG	1 cut(s)	466
BssECI	CCNNGG	4 cut(s)	135, 318, 503, 759
BssMI	GATC	6 cut(s)	346, 539, 616, 622, 658, 943
BssNI	GRCGYC	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	3 cut(s)	137, 241, 761
Bst4CI	ACNGT	1 cut(s)	772
Bst6I	CTCTTC	4 cut(s)	65, 149, 239, 924
BstACI	GRCGYC	1 cut(s)	371
BstC8I	GCNNGC	3 cut(s)	202, 497, 867
BstDEI	CTNAG	1 cut(s)	378
BstF5I	GGATG	2 cut(s)	619, 971
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	6 cut(s)	349, 542, 619, 625, 661, 946
BstMAI	GTCTC	3 cut(s)	185, 282, 374
BstMBI	GATC	6 cut(s)	346, 539, 616, 622, 658, 943
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 499
BstNI	CCWGG	3 cut(s)	137, 241, 761
BstNSI	RCATGY	1 cut(s)	751
BstSCI	CCNGG	5 cut(s)	135, 239, 502, 503, 759
BstSLI	GKGCMC	1 cut(s)	79
BstV1I	GCAGC	4 cut(s)	65, 109, 486, 881
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	539
BsuRI	GGCC	2 cut(s)	134, 958
BtsCI	GGATG	2 cut(s)	619, 971
Cac8I	GCNNGC	3 cut(s)	202, 497, 867
CaiI	CAGNNNCTG	1 cut(s)	766
CciI	TCATGA	1 cut(s)	366
CfoI	GCGC	1 cut(s)	495
Cfr13I	GGNCC	2 cut(s)	133, 763
Cfr9I	CCCGGG	1 cut(s)	503
CseI	GACGC	1 cut(s)	379
Csp6I	GTAC	4 cut(s)	62, 483, 739, 802
CspCI	CAANNNNNGTGG	2 cut(s)	307, 342
CviAII	CATG	2 cut(s)	367, 748
CviQI	GTAC	4 cut(s)	62, 483, 739, 802
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	6 cut(s)	348, 541, 618, 624, 660, 945
DpnII	GATC	6 cut(s)	346, 539, 616, 622, 658, 943
DriI	GACNNNNNGTC	1 cut(s)	274
Eam1104I	CTCTTC	4 cut(s)	65, 149, 239, 924
Eam1105I	GACNNNNNGTC	1 cut(s)	274
EarI	CTCTTC	4 cut(s)	65, 149, 239, 924
EciI	GGCGGA	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	318
Eco31I	GGTCTC	2 cut(s)	282, 374
Eco47I	GGWCC	1 cut(s)	763
Eco57I	CTGAAG	1 cut(s)	968
Eco88I	CYCGRG	2 cut(s)	350, 503
EcoO109I	RGGNCCY	1 cut(s)	763
EcoRII	CCWGG	3 cut(s)	135, 239, 759
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	2 cut(s)	370, 751
FaiI	YATR	7 cut(s)	368, 407, 417, 637, 639, 749, 951
FalI	AAGNNNNNCTT	2 cut(s)	815, 847
FatI	CATG	2 cut(s)	366, 747
FbaI	TGATCA	1 cut(s)	943
Fnu4HI	GCNGC	5 cut(s)	54, 98, 305, 500, 870
FokI	GGATG	2 cut(s)	626, 958
Fsp4HI	GCNGC	5 cut(s)	54, 98, 305, 500, 870
FspI	TGCGCA	1 cut(s)	494
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	5 cut(s)	54, 98, 305, 500, 870
HaeIII	GGCC	2 cut(s)	134, 958
HapII	CCGG	1 cut(s)	504
HgaI	GACGC	1 cut(s)	379
HhaI	GCGC	1 cut(s)	495
Hin1I	GRCGYC	1 cut(s)	371
Hin1II	CATG	2 cut(s)	370, 751
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HinfI	GANTC	8 cut(s)	193, 236, 596, 708, 775, 790, 844, 878
HpaII	CCGG	1 cut(s)	504
HphI	GGTGA	3 cut(s)	301, 353, 433
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188I	TCNGA	8 cut(s)	42, 280, 379, 588, 601, 627, 663, 886
Hpy188III	TCNNGA	5 cut(s)	350, 367, 620, 733, 766
Hpy8I	GTNNAC	1 cut(s)	329
HpyAV	CCTTC	9 cut(s)	79, 112, 124, 172, 250, 817, 841, 905, 909
HpyCH4III	ACNGT	1 cut(s)	772
HpyCH4V	TGCA	4 cut(s)	719, 753, 865, 965
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 499
HpyF3I	CTNAG	1 cut(s)	378
Hsp92I	GRCGYC	1 cut(s)	371
Hsp92II	CATG	2 cut(s)	370, 751
HspAI	GCGC	1 cut(s)	493
Ksp22I	TGATCA	1 cut(s)	943
Kzo9I	GATC	6 cut(s)	346, 539, 616, 622, 658, 943
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	6 cut(s)	283, 301, 439, 627, 700, 729
Lsp1109I	GCAGC	4 cut(s)	65, 109, 486, 881
MaeIII	GTNAC	1 cut(s)	967
MalI	GATC	6 cut(s)	348, 541, 618, 624, 660, 945
MbiI	CCGCTC	2 cut(s)	169, 304
MboI	GATC	6 cut(s)	346, 539, 616, 622, 658, 943
MflI	RGATCY	1 cut(s)	539
MhlI	GDGCHC	2 cut(s)	79, 150
MluCI	AATT	1 cut(s)	678
MlyI	GAGTC	2 cut(s)	187, 245
MspA1I	CMGCKG	1 cut(s)	872
MspI	CCGG	1 cut(s)	504
MspR9I	CCNGG	5 cut(s)	137, 241, 504, 505, 761
MvaI	CCWGG	3 cut(s)	137, 241, 761
MwoI	GCNNNNNNNGC	2 cut(s)	119, 499
NciI	CCSGG	2 cut(s)	504, 505
NdeII	GATC	6 cut(s)	346, 539, 616, 622, 658, 943
NlaIII	CATG	2 cut(s)	370, 751
NlaIV	GGNNCC	3 cut(s)	441, 541, 891
NmeAIII	GCCGAG	1 cut(s)	29
NmuCI	GTSAC	1 cut(s)	967
NsbI	TGCGCA	1 cut(s)	494
NspI	RCATGY	1 cut(s)	751
PaeR7I	CTCGAG	1 cut(s)	350
PagI	TCATGA	1 cut(s)	366
PciI	ACATGT	1 cut(s)	747
PciSI	GCTCTTC	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PfeI	GAWTC	6 cut(s)	596, 708, 775, 790, 844, 878
PflMI	CCANNNNNTGG	1 cut(s)	819
PfoI	TCCNGGA	1 cut(s)	239
PkrI	GCNGC	5 cut(s)	55, 99, 306, 501, 871
PleI	GAGTC	2 cut(s)	187, 244
PpsI	GAGTC	2 cut(s)	187, 244
PpuMI	RGGWCCY	1 cut(s)	763
PscI	ACATGT	1 cut(s)	747
Psp5II	RGGWCCY	1 cut(s)	763
Psp6I	CCWGG	3 cut(s)	135, 239, 759
PspGI	CCWGG	3 cut(s)	135, 239, 759
PspN4I	GGNNCC	3 cut(s)	441, 541, 891
PspPI	GGNCC	2 cut(s)	133, 763
PspPPI	RGGWCCY	1 cut(s)	763
PstNI	CAGNNNCTG	1 cut(s)	766
PsuI	RGATCY	1 cut(s)	539
PvuII	CAGCTG	1 cut(s)	872
RsaI	GTAC	4 cut(s)	63, 484, 740, 803
RsaNI	GTAC	4 cut(s)	62, 483, 739, 802
SapI	GCTCTTC	1 cut(s)	239
SatI	GCNGC	5 cut(s)	54, 98, 305, 500, 870
Sau3AI	GATC	6 cut(s)	346, 539, 616, 622, 658, 943
Sau96I	GGNCC	2 cut(s)	133, 763
ScaI	AGTACT	3 cut(s)	63, 740, 803
SchI	GAGTC	2 cut(s)	187, 245
ScrFI	CCNGG	5 cut(s)	137, 241, 504, 505, 761
SduI	GDGCHC	2 cut(s)	79, 150
Sfr274I	CTCGAG	1 cut(s)	350
SinI	GGWCC	1 cut(s)	763
SlaI	CTCGAG	1 cut(s)	350
SmaI	CCCGGG	1 cut(s)	505
SmlI	CTYRAG	4 cut(s)	205, 250, 350, 797
SmoI	CTYRAG	4 cut(s)	205, 250, 350, 797
Sse9I	AATT	1 cut(s)	678
SsiI	CCGC	6 cut(s)	122, 169, 175, 304, 419, 591
StyD4I	CCNGG	5 cut(s)	135, 239, 502, 503, 759
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	772
TaqI	TCGA	2 cut(s)	68, 351
TaqII	GACCGA	1 cut(s)	306
TasI	AATT	1 cut(s)	678
TatI	WGTACW	3 cut(s)	61, 738, 801
TauI	GCSGC	1 cut(s)	307
TfiI	GAWTC	6 cut(s)	596, 708, 775, 790, 844, 878
TseFI	GTSAC	1 cut(s)	967
TseI	GCWGC	4 cut(s)	53, 97, 499, 869
Tsp45I	GTSAC	1 cut(s)	967
TspDTI	ATGAA	3 cut(s)	701, 870, 966
TspGWI	ACGGA	1 cut(s)	314
TspMI	CCCGGG	1 cut(s)	503
Van91I	CCANNNNNTGG	1 cut(s)	819
VpaK11BI	GGWCC	1 cut(s)	763
XceI	RCATGY	1 cut(s)	751
XhoI	CTCGAG	1 cut(s)	350
XmaI	CCCGGG	1 cut(s)	503
ZrmI	AGTACT	3 cut(s)	63, 740, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.