RchiOBHm_Chr2g0124661

Phytosulfokines

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
37926606 .. 37927162
557 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 210 bp
ATGGCCAGAGTAACTAGAGCCCTGTTCTTCATAGCACTCCTCCTCTGCTCGACTTTAGCTTCTGCAGCTAGACCAGAACCAGCTTTTTCAGCACAAGCTGATATTGAACAGAGCTGTGAAGGAGTTGGAGAAGAAGAGTGCTTAATGAGAAGGGTCAAGCAAATTGTGAAGGAGTTAAGTCTGAATGCGAGCCAAGAGGAGGGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

69

Amino Acids

7.53

Weight (kDa)

4.8

Isoelectric Point (pI)

75.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011726)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 1 cut(s) 107
AluBI AGCT 5 cut(s) 59, 68, 83, 98, 114
AluI AGCT 5 cut(s) 59, 68, 83, 98, 114
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 65
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 22
BbvI GCAGC 1 cut(s) 77
BfaI CTAG 2 cut(s) 15, 69
BfmI CTRYAG 1 cut(s) 63
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
BsaXI ACNNNNNCTCC 1 cut(s) 191
Bsc4I CCNNNNNNNGG 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 199
BseRI GAGGAG 2 cut(s) 29, 32
BseXI GCAGC 1 cut(s) 77
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 199
BsmI GAATGC 1 cut(s) 190
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 22
BspANI GGCC 1 cut(s) 5
BspMAI CTGCAG 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 190
BstMWI GCNNNNNNNGC 2 cut(s) 65, 89
BstSFI CTRYAG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 77
BsuRI GGCC 1 cut(s) 5
Cac8I GCNNGC 1 cut(s) 190
CviJI RGCY 8 cut(s) 5, 20, 59, 68, 83, 98, 114, 192
CviKI_1 RGCY 8 cut(s) 5, 20, 59, 68, 83, 98, 114, 192
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 22
EcoT38I GRGCYC 1 cut(s) 22
FaiI YATR 1 cut(s) 32
Fnu4HI GCNGC 1 cut(s) 66
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 2 cut(s) 15, 69
GluI GCNGC 1 cut(s) 66
HaeIII GGCC 1 cut(s) 5
Hpy188I TCNGA 1 cut(s) 183
HpyAV CCTTC 3 cut(s) 113, 144, 163
HpyCH4V TGCA 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 89
LpnPI CCDG 4 cut(s) 19, 35, 87, 93
Lsp1109I GCAGC 1 cut(s) 77
MaeI CTAG 2 cut(s) 15, 69
MaeIII GTNAC 1 cut(s) 10
MboII GAAGA 3 cut(s) 19, 143, 146
MhlI GDGCHC 1 cut(s) 22
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 162
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 4 cut(s) 50, 53, 190, 193
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 143, 176
Msp20I TGGCCA 1 cut(s) 5
Mva1269I GAATGC 1 cut(s) 190
MwoI GCNNNNNNNGC 2 cut(s) 65, 89
PctI GAATGC 1 cut(s) 190
PkrI GCNGC 1 cut(s) 67
PstI CTGCAG 1 cut(s) 67
SaqAI TTAA 2 cut(s) 143, 176
SatI GCNGC 1 cut(s) 66
SduI GDGCHC 1 cut(s) 22
SetI ASST 5 cut(s) 61, 70, 85, 100, 116
SfcI CTRYAG 1 cut(s) 63
Sse9I AATT 1 cut(s) 162
SspMI CTAG 2 cut(s) 15, 69
TaqI TCGA 1 cut(s) 50
TasI AATT 1 cut(s) 162
Tru1I TTAA 2 cut(s) 143, 176
Tru9I TTAA 2 cut(s) 143, 176
TseI GCWGC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 19
XspI CTAG 2 cut(s) 15, 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.