RchiOBHm_Chr2g0129951
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014927
Physical Location & Seq
Reverse (-)
45870888 .. 45872730
1843 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 492 bp
ATGGCTGATCCTGAGATGATTGAGATTTCTGTTGAAGCGGATGATGACCAAAGTACTACTGATGGAAGTAAAGATTTTCGATCTAAAAGCTCTTCTCCGAAAGCATCATGTTTGTTCTTTGACTTGAATGAGGATGCAACTAGTGATGATCATGGGGACGTTTCAAAAAATATAGGTGAAGCTAGGGAAAGCAAAACATCTACAGAAGGGAAAGAACAGACGGCAACCAGCAGCGGTGCAGTCAGGCAATATGTTAGATCAAAAATGCCAAGGCTTCGTTGGACTTCTGATCTCCATCTAGCATTCATTCATGCCGTTGAGAGGATCGGAGGACAAGAAAGAGCAACTCCAAAATTAGTACTTCAGTTGATGAATGTGAGAGGACTCAGCATTGCTCACGTCAAGAGTCATTTGCAGATGTATCGAAGCAAGAAGCTCGATGAGTCCGGCCAAGGTAAATTCCGAGAACCCAGGCATGCACCTTGGAATTAG

Protein Analysis

163

Amino Acids

18.22

Weight (kDa)

6.6

Isoelectric Point (pI)

58.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 91 - 142 1.8e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014927)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42660
fragaria_vesca FvH4_6g27550 FvH4_6g27550
malus_domestica MD12G1106000.v1.1
prunus_persica Prupe.3G116700_v2.0.a1 Prupe.3G116700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0129951
rosa_laevigata RLG00000019115 RLG00000026381
rosa_multiflora Rmu_sc0005625.1_g000002
rosa_rugosa Rorug02G0290400
rosa_samantha Rh2AG341800 Rh2BG350000 Rh2CG329200 Rh2DG368000
rosa_wichuraiana Rw2G027730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 38, 234
AclWI GGATC 2 cut(s) 2, 332
AcoI YGGCCR 1 cut(s) 448
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 1 cut(s) 347
AfaI GTAC 2 cut(s) 55, 360
AfiI CCNNNNNNNGG 1 cut(s) 321
AgsI TTSAA 3 cut(s) 35, 127, 165
AhlI ACTAGT 1 cut(s) 140
AjiI CACGTC 1 cut(s) 400
AjnI CCWGG 1 cut(s) 470
AluBI AGCT 3 cut(s) 90, 182, 436
AluI AGCT 3 cut(s) 90, 182, 436
AlwI GGATC 2 cut(s) 2, 332
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 1 cut(s) 231
ApoI RAATTY 1 cut(s) 458
AsuHPI GGTGA 1 cut(s) 188
BbvI GCAGC 1 cut(s) 243
BccI CCATC 2 cut(s) 56, 303
BceAI ACGGC 2 cut(s) 237, 299
BcgI CGANNNNNNTGC 4 cut(s) 404, 418, 438, 452
BciT130I CCWGG 1 cut(s) 472
BclI TGATCA 1 cut(s) 148
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 3 cut(s) 141, 183, 299
BfmI CTRYAG 1 cut(s) 201
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
BmcAI AGTACT 2 cut(s) 55, 360
Bme1390I CCNGG 1 cut(s) 472
BmgBI CACGTC 1 cut(s) 400
BmrFI CCNGG 1 cut(s) 472
BmsI GCATC 2 cut(s) 113, 124
BsaBI GATNNNNATC 1 cut(s) 294
BsaJI CCNNGG 4 cut(s) 269, 451, 470, 482
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse3DI GCAATG 1 cut(s) 390
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 1 cut(s) 472
BseDI CCNNGG 4 cut(s) 269, 451, 470, 482
BseGI GGATG 2 cut(s) 46, 139
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 321
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 1 cut(s) 400
BseXI GCAGC 1 cut(s) 243
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 1 cut(s) 450
BsiSI CCGG 1 cut(s) 447
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 321
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 1 cut(s) 450
Bsp143I GATC 6 cut(s) 7, 80, 148, 257, 289, 324
BspACI CCGC 2 cut(s) 38, 234
BspANI GGCC 1 cut(s) 450
BspCNI CTCAG 2 cut(s) 4, 399
BspPI GGATC 2 cut(s) 2, 332
BspQI GCTCTTC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 390
BssECI CCNNGG 4 cut(s) 269, 451, 470, 482
BssMI GATC 6 cut(s) 7, 80, 148, 257, 289, 324
BssT1I CCWWGG 3 cut(s) 269, 451, 482
Bst2UI CCWGG 1 cut(s) 472
Bst6I CTCTTC 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 477
BstDEI CTNAG 2 cut(s) 12, 386
BstF5I GGATG 2 cut(s) 46, 139
BstKTI GATC 6 cut(s) 10, 83, 151, 260, 292, 327
BstMBI GATC 6 cut(s) 7, 80, 148, 257, 289, 324
BstNI CCWGG 1 cut(s) 472
BstNSI RCATGY 1 cut(s) 479
BstSCI CCNGG 1 cut(s) 470
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 243
BsuRI GGCC 1 cut(s) 450
BtrI CACGTC 1 cut(s) 400
BtsCI GGATG 2 cut(s) 46, 139
Cac8I GCNNGC 1 cut(s) 477
Csp6I GTAC 2 cut(s) 54, 359
CviAII CATG 4 cut(s) 108, 152, 311, 476
CviJI RGCY 6 cut(s) 5, 90, 182, 274, 436, 450
CviKI_1 RGCY 6 cut(s) 5, 90, 182, 274, 436, 450
CviQI GTAC 2 cut(s) 54, 359
DdeI CTNAG 2 cut(s) 12, 386
DpnI GATC 6 cut(s) 9, 82, 150, 259, 291, 326
DpnII GATC 6 cut(s) 7, 80, 148, 257, 289, 324
EaeI YGGCCR 1 cut(s) 448
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Eco130I CCWWGG 3 cut(s) 269, 451, 482
Eco57I CTGAAG 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 470
EcoT14I CCWWGG 3 cut(s) 269, 451, 482
ErhI CCWWGG 3 cut(s) 269, 451, 482
FaeI CATG 4 cut(s) 111, 155, 314, 479
FaiI YATR 6 cut(s) 109, 153, 173, 252, 312, 477
FaqI GGGAC 1 cut(s) 170
FatI CATG 4 cut(s) 107, 151, 310, 475
FbaI TGATCA 1 cut(s) 148
Fnu4HI GCNGC 1 cut(s) 232
FokI GGATG 2 cut(s) 53, 146
Fsp4HI GCNGC 1 cut(s) 232
FspBI CTAG 3 cut(s) 141, 183, 299
GluI GCNGC 1 cut(s) 232
HaeIII GGCC 1 cut(s) 450
HapII CCGG 1 cut(s) 447
Hin1II CATG 4 cut(s) 111, 155, 314, 479
HinfI GANTC 3 cut(s) 384, 406, 443
HpaII CCGG 1 cut(s) 447
HphI GGTGA 1 cut(s) 188
Hpy188I TCNGA 4 cut(s) 99, 289, 329, 464
Hpy188III TCNNGA 2 cut(s) 11, 403
HpyAV CCTTC 1 cut(s) 200
HpyCH4IV ACGT 2 cut(s) 159, 399
HpyCH4V TGCA 4 cut(s) 137, 239, 415, 479
HpyF3I CTNAG 2 cut(s) 12, 386
HpySE526I ACGT 2 cut(s) 159, 399
Hsp92II CATG 4 cut(s) 111, 155, 314, 479
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 6 cut(s) 7, 80, 148, 257, 289, 324
LguI GCTCTTC 1 cut(s) 97
LpnPI CCDG 6 cut(s) 24, 229, 241, 457, 460, 484
Lsp1109I GCAGC 1 cut(s) 243
LweI GCATC 2 cut(s) 113, 124
MaeI CTAG 3 cut(s) 141, 183, 299
MaeII ACGT 2 cut(s) 159, 399
MalI GATC 6 cut(s) 9, 82, 150, 259, 291, 326
MboI GATC 6 cut(s) 7, 80, 148, 257, 289, 324
MboII GAAGA 1 cut(s) 84
MluCI AATT 3 cut(s) 353, 458, 487
MlyI GAGTC 3 cut(s) 378, 415, 452
MmeI TCCRAC 1 cut(s) 260
MnlI CCTC 4 cut(s) 124, 315, 323, 374
MspA1I CMGCKG 1 cut(s) 234
MspI CCGG 1 cut(s) 447
MspR9I CCNGG 1 cut(s) 472
Mva1269I GAATGC 1 cut(s) 302
MvaI CCWGG 1 cut(s) 472
NdeII GATC 6 cut(s) 7, 80, 148, 257, 289, 324
NlaIII CATG 4 cut(s) 111, 155, 314, 479
NspI RCATGY 1 cut(s) 479
PaeI GCATGC 1 cut(s) 479
PciSI GCTCTTC 1 cut(s) 97
PctI GAATGC 1 cut(s) 302
PkrI GCNGC 1 cut(s) 233
PleI GAGTC 3 cut(s) 378, 414, 451
PpsI GAGTC 3 cut(s) 378, 414, 451
Psp6I CCWGG 1 cut(s) 470
PspGI CCWGG 1 cut(s) 470
RsaI GTAC 2 cut(s) 55, 360
RsaNI GTAC 2 cut(s) 54, 359
SapI GCTCTTC 1 cut(s) 97
SatI GCNGC 1 cut(s) 232
Sau3AI GATC 6 cut(s) 7, 80, 148, 257, 289, 324
ScaI AGTACT 2 cut(s) 55, 360
SchI GAGTC 3 cut(s) 378, 415, 452
ScrFI CCNGG 1 cut(s) 472
SetI ASST 8 cut(s) 92, 162, 178, 184, 402, 438, 457, 484
SfaNI GCATC 2 cut(s) 113, 124
SfcI CTRYAG 1 cut(s) 201
SpeI ACTAGT 1 cut(s) 140
SphI GCATGC 1 cut(s) 479
Sse9I AATT 3 cut(s) 353, 458, 487
SsiI CCGC 2 cut(s) 38, 234
SspMI CTAG 3 cut(s) 141, 183, 299
StyD4I CCNGG 1 cut(s) 470
StyI CCWWGG 3 cut(s) 269, 451, 482
TaiI ACGT 2 cut(s) 162, 402
TaqI TCGA 3 cut(s) 79, 424, 438
TasI AATT 3 cut(s) 353, 458, 487
TatI WGTACW 2 cut(s) 53, 358
TseI GCWGC 1 cut(s) 231
TspDTI ATGAA 3 cut(s) 295, 299, 386
XapI RAATTY 1 cut(s) 458
XceI RCATGY 1 cut(s) 479
XcmI CCANNNNNNNNNTGG 1 cut(s) 276
XspI CTAG 3 cut(s) 141, 183, 299
ZrmI AGTACT 2 cut(s) 55, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.