Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015389

Physical Location & Seq

Genomic Coordinates Reverse (-)

50092432 .. 50094636

Gene Structure 2205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAGTGAAGAGGTGGCGCAGCCGTTGGCAACCGTGCCGGAGATAATATTGAAGAAGAGGAAAAGTAATGAGGAATTGGCTTTGAGGAGGAAGGAGCAATTGGAGCAGAGGAAGTTTCGCCTTAACAAGAACAAGCAAGAGTTATCAAGAAACCTGAGGACTTTGTCAAAGAGTTCGCTACAGGGAGGTGGACCTTGTCCAAATGAAACACAGGTTGAAGAAAAGAGACCAGCATTAGAGACAACGAACCCCCAGCTTCTTTGGTCATTCGCATACAGGGGTGGGAAAAATGACATGCATCCTGCTGTTAGGAAGAACTTATACAGCCTAAACTTGAGGAAAATCTTCAACGCTGTTTTCGTGAGAGCAGATGAAGCAATGTTAGAAAAGTTGCAGAGGGTGGAGCCTTATGTTACCTATGGGTATCCTAGCCTTAAGAATGTGAAGGAGTTGATTTACAAGAAAGGTTATGCAAAGATAGGCAAGCAAAGAGTTCCTTTGACGGACAACAACTTGATGAAGAGGTATTTGAATGCACTGGGGAAGTCTAATATCATATGCATAGAAGATATAGTGCATGAAATTGCTTCTACTGGTAAATATTTTAAGGAGGCTGCCAGCTTTCTATGGCCCTTTACACTCAACAAGCCAGAAGTAGGATTGAAAGGAGTAAAAGCACGTTACCTAGATGGTGGAGACTCTGGTAATCGGGAGGATAAAATCAATGATCTGATTAGCAAGATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

249

Amino Acids

28.53

Weight (kDa)

9.73

Isoelectric Point (pI)

51.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L30	PF00327	95 - 138	2e-09	Ribosomal protein L30p/L7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80750
fragaria_vesca	FvH4_6g28820
malus_domestica	MD00G1084000.v1.1 MD17G1221600.v1.1
prunus_persica	Prupe.3G096800_v2.0.a1
pyrus_communis	pycom09g14210
rosa_chinensis	RchiOBHm_Chr2g0133291 RchiOBHm_Chr2g0133351
rosa_multiflora	Rmu_sc0003874.1_g000013
rosa_roxburghii	Rroxscaffold_2G00111240
rosa_rugosa	Rorug02G0311200
rosa_samantha	Rh2AG363600 Rh2BG369300 Rh2CG346800 Rh2DG386300
rosa_wichuraiana	Rw2G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	656
AflII	CTTAAG	1 cut(s)	434
AgsI	TTSAA	5 cut(s)	52, 218, 349, 532, 664
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	2 cut(s)	256, 621
AluI	AGCT	2 cut(s)	256, 621
Alw26I	GTCTC	3 cut(s)	220, 233, 690
AoxI	GGCC	1 cut(s)	629
ApeKI	GCWGC	2 cut(s)	19, 614
Asp700I	GAANNNNTTC	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	2 cut(s)	191, 630
AvaII	GGWCC	1 cut(s)	191
AxyI	CCTNAGG	1 cut(s)	155
BarI	GAAGNNNNNNTAC	2 cut(s)	305, 337
BbvI	GCAGC	2 cut(s)	31, 601
BccI	CCATC	1 cut(s)	683
BceAI	ACGGC	1 cut(s)	7
BciVI	GTATCC	1 cut(s)	435
BcoDI	GTCTC	3 cut(s)	220, 233, 690
BfaI	CTAG	2 cut(s)	429, 686
BfmI	CTRYAG	1 cut(s)	179
BfrI	CTTAAG	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	435
BisI	GCNGC	2 cut(s)	20, 615
BlsI	GCNGC	2 cut(s)	21, 616
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	191, 630
BmiI	GGNNCC	1 cut(s)	405
BmrI	ACTGGG	1 cut(s)	548
BmsI	GCATC	1 cut(s)	307
BmuI	ACTGGG	1 cut(s)	548
BpuEI	CTTGAG	1 cut(s)	355
BsaI	GGTCTC	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	656
Bse1I	ACTGG	2 cut(s)	543, 598
Bse21I	CCTNAGG	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	384
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	1 cut(s)	656
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	2 cut(s)	543, 598
BseRI	GAGGAG	1 cut(s)	100
BseXI	GCAGC	2 cut(s)	31, 601
BseYI	CCCAGC	1 cut(s)	252
BshFI	GGCC	1 cut(s)	631
BsiSI	CCGG	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	656
BsmAI	GTCTC	3 cut(s)	220, 233, 690
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	1 cut(s)	631
Bso31I	GGTCTC	1 cut(s)	220
Bsp143I	GATC	1 cut(s)	727
BspANI	GGCC	1 cut(s)	631
BspCNI	CTCAG	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	405
BspTI	CTTAAG	1 cut(s)	434
BspTNI	GGTCTC	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	543, 598
BssMI	GATC	1 cut(s)	727
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	3 cut(s)	3, 50, 515
BstAFI	CTTAAG	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	485, 619
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	298
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	1 cut(s)	730
BstMAI	GTCTC	3 cut(s)	220, 233, 690
BstMBI	GATC	1 cut(s)	727
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 374
BstNSI	RCATGY	1 cut(s)	298
BstSFI	CTRYAG	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	31, 601
Bsu36I	CCTNAGG	1 cut(s)	155
BsuI	GTATCC	1 cut(s)	435
BsuRI	GGCC	1 cut(s)	631
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	536
Cac8I	GCNNGC	2 cut(s)	485, 619
CfoI	GCGC	1 cut(s)	19
Cfr13I	GGNCC	2 cut(s)	191, 630
CviAII	CATG	2 cut(s)	295, 578
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	1 cut(s)	729
DpnII	GATC	1 cut(s)	727
Eam1104I	CTCTTC	3 cut(s)	3, 50, 515
EarI	CTCTTC	3 cut(s)	3, 50, 515
Eco31I	GGTCTC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	191
Eco81I	CCTNAGG	1 cut(s)	155
EcoT22I	ATGCAT	2 cut(s)	300, 563
FaeI	CATG	2 cut(s)	298, 581
FalI	AAGNNNNNCTT	2 cut(s)	481, 513
FatI	CATG	2 cut(s)	294, 577
FauNDI	CATATG	1 cut(s)	557
Fnu4HI	GCNGC	2 cut(s)	20, 615
FokI	GGATG	1 cut(s)	285
Fsp4HI	GCNGC	2 cut(s)	20, 615
FspBI	CTAG	2 cut(s)	429, 686
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	2 cut(s)	20, 615
GsaI	CCCAGC	1 cut(s)	256
HaeIII	GGCC	1 cut(s)	631
HapII	CCGG	1 cut(s)	38
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	298, 581
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HinfI	GANTC	1 cut(s)	698
HpaII	CCGG	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	1 cut(s)	732
Hpy188III	TCNNGA	3 cut(s)	147, 361, 710
Hpy8I	GTNNAC	1 cut(s)	191
HpyAV	CCTTC	2 cut(s)	85, 439
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	1 cut(s)	679
HpyCH4V	TGCA	6 cut(s)	298, 394, 473, 536, 561, 577
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 374
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	679
Hsp92II	CATG	2 cut(s)	298, 581
HspAI	GCGC	1 cut(s)	17
Kzo9I	GATC	1 cut(s)	727
LmnI	GCTCC	3 cut(s)	94, 103, 403
Lsp1109I	GCAGC	2 cut(s)	31, 601
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	2 cut(s)	429, 686
MaeII	ACGT	1 cut(s)	679
MaeIII	GTNAC	2 cut(s)	412, 680
MalI	GATC	1 cut(s)	729
MboI	GATC	1 cut(s)	727
MboII	GAAGA	8 cut(s)	20, 64, 67, 230, 325, 337, 532, 578
MfeI	CAATTG	1 cut(s)	98
MluCI	AATT	4 cut(s)	74, 98, 582, 745
MlyI	GAGTC	1 cut(s)	692
Mph1103I	ATGCAT	2 cut(s)	300, 563
MroXI	GAANNNNTTC	1 cut(s)	344
MseI	TTAA	3 cut(s)	123, 435, 606
MspCI	CTTAAG	1 cut(s)	434
MspI	CCGG	1 cut(s)	38
MunI	CAATTG	1 cut(s)	98
Mva1269I	GAATGC	1 cut(s)	538
MwoI	GCNNNNNNNGC	2 cut(s)	103, 374
NdeI	CATATG	1 cut(s)	557
NdeII	GATC	1 cut(s)	727
NlaIII	CATG	2 cut(s)	298, 581
NlaIV	GGNNCC	1 cut(s)	405
NsiI	ATGCAT	2 cut(s)	300, 563
NspI	RCATGY	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PctI	GAATGC	1 cut(s)	538
PdmI	GAANNNNTTC	1 cut(s)	344
PflFI	GACNNNGTC	2 cut(s)	163, 195
PkrI	GCNGC	2 cut(s)	21, 616
PleI	GAGTC	1 cut(s)	692
PpsI	GAGTC	1 cut(s)	692
PspFI	CCCAGC	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	2 cut(s)	191, 630
PsyI	GACNNNGTC	2 cut(s)	163, 195
SaqAI	TTAA	3 cut(s)	123, 435, 606
SatI	GCNGC	2 cut(s)	20, 615
Sau3AI	GATC	1 cut(s)	727
Sau96I	GGNCC	2 cut(s)	191, 630
SchI	GAGTC	1 cut(s)	692
SfaNI	GCATC	1 cut(s)	307
SfcI	CTRYAG	1 cut(s)	179
SinI	GGWCC	1 cut(s)	191
SmlI	CTYRAG	2 cut(s)	334, 434
SmoI	CTYRAG	2 cut(s)	334, 434
Sse9I	AATT	4 cut(s)	74, 98, 582, 745
SspI	AATATT	2 cut(s)	48, 602
SspMI	CTAG	2 cut(s)	429, 686
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	1 cut(s)	682
TasI	AATT	4 cut(s)	74, 98, 582, 745
Tru1I	TTAA	3 cut(s)	123, 435, 606
Tru9I	TTAA	3 cut(s)	123, 435, 606
TscAI	CASTG	1 cut(s)	543
TseI	GCWGC	2 cut(s)	19, 614
TspDTI	ATGAA	4 cut(s)	219, 387, 533, 594
TspGWI	ACGGA	1 cut(s)	518
TspRI	CASTG	1 cut(s)	543
Tth111I	GACNNNGTC	2 cut(s)	163, 195
Vha464I	CTTAAG	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	191
XceI	RCATGY	1 cut(s)	298
XmnI	GAANNNNTTC	1 cut(s)	344
XspI	CTAG	2 cut(s)	429, 686
Zsp2I	ATGCAT	2 cut(s)	300, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.