Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017428

Physical Location & Seq

Genomic Coordinates Forward (+)

52817095 .. 52817555

Gene Structure 461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAAGTGCCTCTTTTTTCAGGTATGTGGATTAAAGGGTCCAAGACCCAGATATCCAAGAGCCTGGAAAGCCAATAAGGAGATTGGGACCATTTTGAAATCCCTCAAGCTTGTTGAGTGTATTAAGGGTCTGTCAAATGTGAAAGAGGAGGTTTATGGGGCCCTTGATTCTTTCATTGTTTGGGAATTGGAATTCCCTTTGATTACAGTGACATTATTCTGCTACAGACGGATGTTTTCAATACTTTCACTGAGCTCTTGCAGCAAACTGGAAATGTCACAAAAGGCCAGATTACATGTTGGTTCGAGCTCATGGCTTTTATTTGGTGTAATTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

112

Amino Acids

12.84

Weight (kDa)

9.48

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017428)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0135651
rosa_laevigata	RLG00000007044 RLG00000026784 RLG00000028578
rosa_roxburghii	Rroxscaffold_1G00041260
rosa_rugosa	Rorug04G0184000 Rorug07G0146700 Rorug07G0146800
rosa_samantha	Rh1AG390900 Rh1BG355000 Rh1DG085600 Rh1DG385700 Rh7DG247400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	191
AflIII	ACRYGT	1 cut(s)	295
AgsI	TTSAA	2 cut(s)	97, 240
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	3 cut(s)	109, 255, 309
AluI	AGCT	3 cut(s)	109, 255, 309
Alw21I	GWGCWC	2 cut(s)	257, 311
AoxI	GGCC	2 cut(s)	159, 285
ApaI	GGGCCC	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	261
ApoI	RAATTY	1 cut(s)	191
AspS9I	GGNCC	4 cut(s)	38, 87, 159, 160
AvaII	GGWCC	2 cut(s)	38, 87
BaeGI	GKGCMC	1 cut(s)	163
BanII	GRGCYC	3 cut(s)	163, 257, 311
Bbv12I	GWGCWC	2 cut(s)	257, 311
BbvI	GCAGC	1 cut(s)	273
BciT130I	CCWGG	1 cut(s)	64
BfmI	CTRYAG	1 cut(s)	223
BisI	GCNGC	1 cut(s)	262
BlsI	GCNGC	1 cut(s)	263
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	2 cut(s)	38, 87
BmgT120I	GGNCC	4 cut(s)	38, 87, 159, 160
BmiI	GGNNCC	4 cut(s)	39, 88, 160, 161
BmrFI	CCNGG	1 cut(s)	64
BpuEI	CTTGAG	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	64
BseGI	GGATG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	273
BseRI	GAGGAG	1 cut(s)	161
BseSI	GKGCMC	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	273
BshFI	GGCC	2 cut(s)	161, 287
BsiHKAI	GWGCWC	2 cut(s)	257, 311
BslFI	GGGAC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	2 cut(s)	161, 287
Bsp120I	GGGCCC	1 cut(s)	159
Bsp1286I	GDGCHC	3 cut(s)	163, 257, 311
BspANI	GGCC	2 cut(s)	161, 287
BspCNI	CTCAG	1 cut(s)	243
BspLI	GGNNCC	4 cut(s)	39, 88, 160, 161
BsrI	ACTGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 261
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	223
BstSLI	GKGCMC	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	273
BstXI	CCANNNNNNTGG	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	161, 287
BtsCI	GGATG	1 cut(s)	237
BtsIMutI	CAGTG	2 cut(s)	213, 248
Cfr13I	GGNCC	4 cut(s)	38, 87, 159, 160
CviAII	CATG	2 cut(s)	296, 312
CviJI	RGCY	8 cut(s)	62, 71, 109, 161, 255, 287, 309, 316
CviKI_1	RGCY	8 cut(s)	62, 71, 109, 161, 255, 287, 309, 316
DdeI	CTNAG	1 cut(s)	251
Ecl136II	GAGCTC	2 cut(s)	255, 309
Eco24I	GRGCYC	3 cut(s)	163, 257, 311
Eco32I	GATATC	1 cut(s)	53
Eco47I	GGWCC	2 cut(s)	38, 87
Eco53kI	GAGCTC	2 cut(s)	255, 309
EcoICRI	GAGCTC	2 cut(s)	255, 309
EcoO109I	RGGNCCY	2 cut(s)	159, 160
EcoRI	GAATTC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	62
EcoRV	GATATC	1 cut(s)	53
EcoT38I	GRGCYC	3 cut(s)	163, 257, 311
FaeI	CATG	2 cut(s)	299, 315
FaiI	YATR	4 cut(s)	25, 156, 297, 313
FalI	AAGNNNNNCTT	1 cut(s)	28
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	2 cut(s)	295, 311
Fnu4HI	GCNGC	1 cut(s)	262
FokI	GGATG	1 cut(s)	244
FriOI	GRGCYC	3 cut(s)	163, 257, 311
Fsp4HI	GCNGC	1 cut(s)	262
GluI	GCNGC	1 cut(s)	262
HaeIII	GGCC	2 cut(s)	161, 287
Hin1II	CATG	2 cut(s)	299, 315
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	1 cut(s)	167
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	1 cut(s)	261
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 261
HpyF3I	CTNAG	1 cut(s)	251
Hsp92II	CATG	2 cut(s)	299, 315
LpnPI	CCDG	6 cut(s)	5, 49, 61, 76, 254, 301
Lsp1109I	GCAGC	1 cut(s)	273
MaeIII	GTNAC	2 cut(s)	208, 276
MhlI	GDGCHC	3 cut(s)	163, 257, 311
MluCI	AATT	3 cut(s)	185, 191, 330
MnlI	CCTC	4 cut(s)	20, 113, 139, 142
MseI	TTAA	2 cut(s)	32, 123
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	2 cut(s)	68, 261
NlaIII	CATG	2 cut(s)	299, 315
NlaIV	GGNNCC	4 cut(s)	39, 88, 160, 161
NmuCI	GTSAC	2 cut(s)	208, 276
NspI	RCATGY	1 cut(s)	299
PciI	ACATGT	1 cut(s)	295
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	263
PscI	ACATGT	1 cut(s)	295
Psp124BI	GAGCTC	2 cut(s)	257, 311
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	4 cut(s)	39, 88, 160, 161
PspOMI	GGGCCC	1 cut(s)	159
PspPI	GGNCC	4 cut(s)	38, 87, 159, 160
SacI	GAGCTC	2 cut(s)	257, 311
SaqAI	TTAA	2 cut(s)	32, 123
SatI	GCNGC	1 cut(s)	262
Sau96I	GGNCC	4 cut(s)	38, 87, 159, 160
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	3 cut(s)	163, 257, 311
SetI	ASST	5 cut(s)	24, 111, 153, 257, 311
SfcI	CTRYAG	1 cut(s)	223
SinI	GGWCC	2 cut(s)	38, 87
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	3 cut(s)	185, 191, 330
SstI	GAGCTC	2 cut(s)	257, 311
StyD4I	CCNGG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	305
TasI	AATT	3 cut(s)	185, 191, 330
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	2 cut(s)	32, 123
Tru9I	TTAA	2 cut(s)	32, 123
TscAI	CASTG	2 cut(s)	213, 255
TseFI	GTSAC	2 cut(s)	208, 276
TseI	GCWGC	1 cut(s)	261
Tsp45I	GTSAC	2 cut(s)	208, 276
TspDTI	ATGAA	2 cut(s)	17, 163
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	2 cut(s)	213, 255
VpaK11BI	GGWCC	2 cut(s)	38, 87
XapI	RAATTY	1 cut(s)	191
XceI	RCATGY	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.