Dehydrogenase reductase SDR family member
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0135651 |
| rosa_laevigata | RLG00000007044 RLG00000026784 RLG00000028578 |
| rosa_roxburghii | Rroxscaffold_1G00041260 |
| rosa_rugosa | Rorug04G0184000 Rorug07G0146700 Rorug07G0146800 |
| rosa_samantha | Rh1AG390900 Rh1BG355000 Rh1DG085600 Rh1DG385700 Rh7DG247400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 21 |
| AcsI | RAATTY | 1 cut(s) | 263 |
| AfaI | GTAC | 1 cut(s) | 94 |
| AgsI | TTSAA | 2 cut(s) | 263, 269 |
| AjnI | CCWGG | 2 cut(s) | 67, 354 |
| AluBI | AGCT | 3 cut(s) | 107, 121, 219 |
| AluI | AGCT | 3 cut(s) | 107, 121, 219 |
| Alw26I | GTCTC | 1 cut(s) | 17 |
| Ama87I | CYCGRG | 1 cut(s) | 246 |
| ApeKI | GCWGC | 4 cut(s) | 173, 219, 222, 382 |
| ApoI | RAATTY | 1 cut(s) | 263 |
| AspS9I | GGNCC | 1 cut(s) | 71 |
| AsuHPI | GGTGA | 1 cut(s) | 64 |
| AvaI | CYCGRG | 1 cut(s) | 246 |
| AvaII | GGWCC | 1 cut(s) | 71 |
| BbvI | GCAGC | 4 cut(s) | 160, 206, 209, 369 |
| BccI | CCATC | 2 cut(s) | 282, 327 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 89, 123, 134, 168 |
| BciT130I | CCWGG | 2 cut(s) | 69, 356 |
| BcoDI | GTCTC | 1 cut(s) | 17 |
| BisI | GCNGC | 5 cut(s) | 21, 174, 220, 223, 383 |
| BlsI | GCNGC | 5 cut(s) | 22, 175, 221, 224, 384 |
| Bme1390I | CCNGG | 2 cut(s) | 69, 356 |
| Bme18I | GGWCC | 1 cut(s) | 71 |
| BmeT110I | CYCGRG | 1 cut(s) | 246 |
| BmgT120I | GGNCC | 1 cut(s) | 71 |
| BmrFI | CCNGG | 2 cut(s) | 69, 356 |
| BmsI | GCATC | 1 cut(s) | 349 |
| BsaJI | CCNNGG | 3 cut(s) | 181, 245, 354 |
| BseBI | CCWGG | 2 cut(s) | 69, 356 |
| BseDI | CCNNGG | 3 cut(s) | 181, 245, 354 |
| BseGI | GGATG | 2 cut(s) | 319, 364 |
| BseXI | GCAGC | 4 cut(s) | 160, 206, 209, 369 |
| BsgI | GTGCAG | 1 cut(s) | 174 |
| BsiHKCI | CYCGRG | 1 cut(s) | 246 |
| BslFI | GGGAC | 1 cut(s) | 264 |
| BsmAI | GTCTC | 1 cut(s) | 17 |
| BsmFI | GGGAC | 1 cut(s) | 264 |
| BsoBI | CYCGRG | 1 cut(s) | 246 |
| Bsp19I | CCATGG | 1 cut(s) | 181 |
| BspACI | CCGC | 1 cut(s) | 21 |
| BssECI | CCNNGG | 3 cut(s) | 181, 245, 354 |
| BssT1I | CCWWGG | 1 cut(s) | 181 |
| Bst2UI | CCWGG | 2 cut(s) | 69, 356 |
| Bst4CI | ACNGT | 1 cut(s) | 255 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 382 |
| BstDSI | CCRYGG | 1 cut(s) | 181 |
| BstEII | GGTNACC | 1 cut(s) | 52 |
| BstF5I | GGATG | 2 cut(s) | 319, 364 |
| BstMAI | GTCTC | 1 cut(s) | 17 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 382 |
| BstNI | CCWGG | 2 cut(s) | 69, 356 |
| BstPI | GGTNACC | 1 cut(s) | 52 |
| BstSCI | CCNGG | 2 cut(s) | 67, 354 |
| BstV1I | GCAGC | 4 cut(s) | 160, 206, 209, 369 |
| BtgI | CCRYGG | 1 cut(s) | 181 |
| BtsCI | GGATG | 2 cut(s) | 319, 364 |
| Cfr13I | GGNCC | 1 cut(s) | 71 |
| Csp6I | GTAC | 1 cut(s) | 93 |
| CviAII | CATG | 1 cut(s) | 182 |
| CviJI | RGCY | 3 cut(s) | 107, 121, 219 |
| CviKI_1 | RGCY | 3 cut(s) | 107, 121, 219 |
| CviQI | GTAC | 1 cut(s) | 93 |
| Eco130I | CCWWGG | 1 cut(s) | 181 |
| Eco32I | GATATC | 1 cut(s) | 204 |
| Eco47I | GGWCC | 1 cut(s) | 71 |
| Eco88I | CYCGRG | 1 cut(s) | 246 |
| Eco91I | GGTNACC | 1 cut(s) | 52 |
| EcoO65I | GGTNACC | 1 cut(s) | 52 |
| EcoRII | CCWGG | 2 cut(s) | 67, 354 |
| EcoRV | GATATC | 1 cut(s) | 204 |
| EcoT14I | CCWWGG | 1 cut(s) | 181 |
| ErhI | CCWWGG | 1 cut(s) | 181 |
| FaeI | CATG | 1 cut(s) | 185 |
| FaiI | YATR | 7 cut(s) | 8, 183, 208, 237, 308, 314, 342 |
| FaqI | GGGAC | 1 cut(s) | 264 |
| FatI | CATG | 1 cut(s) | 181 |
| Fnu4HI | GCNGC | 5 cut(s) | 21, 174, 220, 223, 383 |
| FokI | GGATG | 2 cut(s) | 306, 371 |
| Fsp4HI | GCNGC | 5 cut(s) | 21, 174, 220, 223, 383 |
| GluI | GCNGC | 5 cut(s) | 21, 174, 220, 223, 383 |
| Hin1II | CATG | 1 cut(s) | 185 |
| HincII | GTYRAC | 1 cut(s) | 162 |
| HindII | GTYRAC | 1 cut(s) | 162 |
| HindIII | AAGCTT | 1 cut(s) | 119 |
| HinfI | GANTC | 1 cut(s) | 290 |
| HphI | GGTGA | 1 cut(s) | 64 |
| Hpy166II | GTNNAC | 1 cut(s) | 162 |
| Hpy188I | TCNGA | 1 cut(s) | 111 |
| Hpy188III | TCNNGA | 2 cut(s) | 128, 399 |
| Hpy8I | GTNNAC | 1 cut(s) | 162 |
| HpyCH4III | ACNGT | 1 cut(s) | 255 |
| HpyCH4V | TGCA | 2 cut(s) | 155, 306 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 382 |
| Hsp92II | CATG | 1 cut(s) | 185 |
| LpnPI | CCDG | 6 cut(s) | 54, 81, 224, 341, 368, 371 |
| Lsp1109I | GCAGC | 4 cut(s) | 160, 206, 209, 369 |
| LweI | GCATC | 1 cut(s) | 349 |
| MaeIII | GTNAC | 1 cut(s) | 52 |
| MboII | GAAGA | 1 cut(s) | 116 |
| MluCI | AATT | 4 cut(s) | 45, 168, 263, 326 |
| MnlI | CCTC | 1 cut(s) | 255 |
| MspR9I | CCNGG | 2 cut(s) | 69, 356 |
| MvaI | CCWGG | 2 cut(s) | 69, 356 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 382 |
| NcoI | CCATGG | 1 cut(s) | 181 |
| NlaIII | CATG | 1 cut(s) | 185 |
| NmuCI | GTSAC | 1 cut(s) | 52 |
| PfeI | GAWTC | 1 cut(s) | 290 |
| PkrI | GCNGC | 5 cut(s) | 22, 175, 221, 224, 384 |
| Psp6I | CCWGG | 2 cut(s) | 67, 354 |
| PspEI | GGTNACC | 1 cut(s) | 52 |
| PspGI | CCWGG | 2 cut(s) | 67, 354 |
| PspPI | GGNCC | 1 cut(s) | 71 |
| RsaI | GTAC | 1 cut(s) | 94 |
| RsaNI | GTAC | 1 cut(s) | 93 |
| SatI | GCNGC | 5 cut(s) | 21, 174, 220, 223, 383 |
| Sau96I | GGNCC | 1 cut(s) | 71 |
| ScrFI | CCNGG | 2 cut(s) | 69, 356 |
| SetI | ASST | 4 cut(s) | 109, 123, 152, 221 |
| SfaNI | GCATC | 1 cut(s) | 349 |
| SinI | GGWCC | 1 cut(s) | 71 |
| Sse9I | AATT | 4 cut(s) | 45, 168, 263, 326 |
| SsiI | CCGC | 1 cut(s) | 21 |
| StyD4I | CCNGG | 2 cut(s) | 67, 354 |
| StyI | CCWWGG | 1 cut(s) | 181 |
| TaaI | ACNGT | 1 cut(s) | 255 |
| TaqI | TCGA | 4 cut(s) | 38, 127, 144, 277 |
| TasI | AATT | 4 cut(s) | 45, 168, 263, 326 |
| TauI | GCSGC | 1 cut(s) | 23 |
| TfiI | GAWTC | 1 cut(s) | 290 |
| TseFI | GTSAC | 1 cut(s) | 52 |
| TseI | GCWGC | 4 cut(s) | 173, 219, 222, 382 |
| Tsp45I | GTSAC | 1 cut(s) | 52 |
| VpaK11BI | GGWCC | 1 cut(s) | 71 |
| XapI | RAATTY | 1 cut(s) | 263 |