Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0017428

Physical Location & Seq

Genomic Coordinates Reverse (-)

6032551 .. 6037264

Gene Structure 4714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026784

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGACCTGTGCCCAGGCCATTAACGCAATAAAGAGAGATGAGGACAGCTTCTCCACCAGAAATAGGATTCTCCGCGGAGATTTGAGCCCTGAGAATATTCTGTTGGACAAAAGCCTCTTCATCTCCATATTAAATTGGCAGACTTTGATCTTGCAACTTACATCAGGCCTGAGTTTGCATGGTTTGGTGGGGAAATTTTTTACATTCTTCTTAAAGGTTGGTGAAGGATCCAACTCAAAGGATTATCCATCAATCAGAAACACAGACTCAGAAGATGAAGAGAGTGGTTCCTCCGAAAATGAGGGAAGAAAATTAAAAATTAAGAAGGAAAGAATATATACAAGTGCGATCAAATTAAGTCTTGATTCCTCTCATCTACTCCCTGTTCTTCCCTCTTCCGACTCAAACTGCAGAAGAATCCAGTTGTACGGGACCGTTTGTTTACTGCTGTGTTGGTTGGAGCATTTGCTCGTGGCTTTTATTTGGTGTATTTTATTGACATCGAATTTTGTTATAATTGTTATACTGTTTCCTCCTCCATGTGTTGAAGTTGGATATCTTATTGCGCCGCCAGGATGGAAACCAATTGCACCTCATAGTGATTGGAAACGATCAAAAATTATTTTGAACCATGAAGAGCTTCAACATAGTTTAGTCTCTGACACAAAGGATAATTTGGCAGTTCACCCTTTGACCAACCTTAGTTCCAAATTGAATTGGACAGAAGAACGGGTGGATGAATTTTTAAAGTACTATCTCTCTACTCCTCTTCCATCCGTCTCCTCTCTCATCCTTCCATCTCCACTGTATCTCTACAACTTTTTCTCTCATCCTATATGGATTTGTGAGAATGCTTGGGTGACCCAAATTGTCAATGTGAAATCTTCAAGCATTAAATTGGTGCTTCATTTTCTGGAGTGGGAGGAATTGGAAAGAAATGCATTTAAGGTGCCCTTCGATAGGTATGAGCTCAAAACTTCATGGTTAGACGCCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016043 GO:0016049 GO:0016192 GO:0021700 GO:0022622 GO:0030154 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032940 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0060560 GO:0071695 GO:0071840 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TOM20_plant

Protein Analysis

333

Amino Acids

38.01

Weight (kDa)

6.16

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017428)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0135651
rosa_laevigata	RLG00000007044 RLG00000026784 RLG00000028578
rosa_roxburghii	Rroxscaffold_1G00041260
rosa_rugosa	Rorug04G0184000 Rorug07G0146700 Rorug07G0146800
rosa_samantha	Rh1AG390900 Rh1BG355000 Rh1DG085600 Rh1DG385700 Rh7DG247400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	515
AccB1I	GGYRCC	1 cut(s)	949
AccII	CGCG	1 cut(s)	75
AciI	CCGC	3 cut(s)	73, 75, 569
AclWI	GGATC	2 cut(s)	222, 235
AcsI	RAATTY	3 cut(s)	194, 505, 740
AcyI	GRCGYC	1 cut(s)	990
AfaI	GTAC	2 cut(s)	428, 752
AfiI	CCNNNNNNNGG	2 cut(s)	63, 960
AgsI	TTSAA	5 cut(s)	548, 628, 644, 715, 888
AjnI	CCWGG	2 cut(s)	12, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
AluBI	AGCT	3 cut(s)	48, 640, 970
AluI	AGCT	3 cut(s)	48, 640, 970
Alw21I	GWGCWC	1 cut(s)	972
Alw26I	GTCTC	2 cut(s)	661, 784
AlwI	GGATC	2 cut(s)	222, 235
AoxI	GGCC	2 cut(s)	15, 166
ApoI	RAATTY	3 cut(s)	194, 505, 740
Asp700I	GAANNNNTTC	1 cut(s)	639
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	1 cut(s)	432
AsuHPI	GGTGA	3 cut(s)	233, 677, 871
AvaII	GGWCC	1 cut(s)	432
BaeGI	GKGCMC	2 cut(s)	13, 954
BamHI	GGATCC	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	949
BanII	GRGCYC	2 cut(s)	89, 972
BauI	CACGAG	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	972
BccI	CCATC	4 cut(s)	256, 570, 781, 805
BciT130I	CCWGG	2 cut(s)	14, 573
BcoDI	GTCTC	2 cut(s)	661, 784
BfmI	CTRYAG	1 cut(s)	409
BisI	GCNGC	1 cut(s)	569
BlsI	GCNGC	1 cut(s)	570
BmcAI	AGTACT	1 cut(s)	752
Bme1390I	CCNGG	2 cut(s)	14, 573
Bme18I	GGWCC	1 cut(s)	432
BmgT120I	GGNCC	1 cut(s)	432
BmiI	GGNNCC	4 cut(s)	229, 289, 433, 951
BmrFI	CCNGG	2 cut(s)	14, 573
BpmI	CTGGAG	1 cut(s)	935
BsaHI	GRCGYC	1 cut(s)	990
BsaJI	CCNNGG	2 cut(s)	12, 73
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 960
Bse1I	ACTGG	1 cut(s)	421
BseBI	CCWGG	2 cut(s)	14, 573
BseDI	CCNNGG	2 cut(s)	12, 73
BseGI	GGATG	5 cut(s)	581, 742, 773, 789, 829
BseLI	CCNNNNNNNGG	2 cut(s)	63, 960
BseMII	CTCAG	3 cut(s)	81, 161, 282
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	3 cut(s)	525, 756, 772
BseSI	GKGCMC	2 cut(s)	13, 954
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	17, 168
BshNI	GGYRCC	1 cut(s)	949
BsiHKAI	GWGCWC	1 cut(s)	972
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	2 cut(s)	63, 960
BsmAI	GTCTC	2 cut(s)	661, 784
BsmBI	CGTCTC	1 cut(s)	784
BsmFI	GGGAC	1 cut(s)	445
BsmI	GAATGC	1 cut(s)	856
BsnI	GGCC	2 cut(s)	17, 168
Bsp1286I	GDGCHC	4 cut(s)	13, 89, 954, 972
Bsp143I	GATC	4 cut(s)	147, 227, 348, 611
BspACI	CCGC	3 cut(s)	73, 75, 569
BspANI	GGCC	2 cut(s)	17, 168
BspCNI	CTCAG	3 cut(s)	82, 162, 281
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	4 cut(s)	229, 289, 433, 951
BspMAI	CTGCAG	1 cut(s)	413
BspPI	GGATC	2 cut(s)	222, 235
BspQI	GCTCTTC	1 cut(s)	630
BspT107I	GGYRCC	1 cut(s)	949
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	2 cut(s)	12, 73
BssMI	GATC	4 cut(s)	147, 227, 348, 611
BssNI	GRCGYC	1 cut(s)	990
BssSI	CACGAG	1 cut(s)	470
Bst2BI	CACGAG	1 cut(s)	470
Bst2UI	CCWGG	2 cut(s)	14, 573
Bst4CI	ACNGT	3 cut(s)	436, 528, 807
Bst6I	CTCTTC	5 cut(s)	122, 273, 400, 630, 774
BstACI	GRCGYC	1 cut(s)	990
BstDEI	CTNAG	4 cut(s)	90, 170, 268, 701
BstDSI	CCRYGG	1 cut(s)	73
BstEII	GGTNACC	1 cut(s)	859
BstENI	CCTNNNNNAGG	1 cut(s)	958
BstF5I	GGATG	5 cut(s)	581, 742, 773, 789, 829
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	4 cut(s)	150, 230, 351, 614
BstMAI	GTCTC	2 cut(s)	661, 784
BstMBI	GATC	4 cut(s)	147, 227, 348, 611
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	2 cut(s)	14, 573
BstPI	GGTNACC	1 cut(s)	859
BstSCI	CCNGG	2 cut(s)	12, 571
BstSFI	CTRYAG	1 cut(s)	409
BstSLI	GKGCMC	2 cut(s)	13, 954
BstUI	CGCG	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	227
BsuRI	GGCC	2 cut(s)	17, 168
BtgI	CCRYGG	1 cut(s)	73
BtsCI	GGATG	5 cut(s)	581, 742, 773, 789, 829
BtsIMutI	CAGTG	1 cut(s)	803
CfoI	GCGC	1 cut(s)	568
Cfr13I	GGNCC	1 cut(s)	432
Cfr42I	CCGCGG	1 cut(s)	76
Csp6I	GTAC	2 cut(s)	427, 751
CviAII	CATG	5 cut(s)	179, 540, 632, 981, 994
CviJI	RGCY	8 cut(s)	17, 48, 87, 114, 168, 476, 640, 970
CviKI_1	RGCY	8 cut(s)	17, 48, 87, 114, 168, 476, 640, 970
CviQI	GTAC	2 cut(s)	427, 751
DdeI	CTNAG	4 cut(s)	90, 170, 268, 701
DpnI	GATC	4 cut(s)	149, 229, 350, 613
DpnII	GATC	4 cut(s)	147, 227, 348, 611
DraI	TTTAAA	1 cut(s)	747
Eam1104I	CTCTTC	5 cut(s)	122, 273, 400, 630, 774
EarI	CTCTTC	5 cut(s)	122, 273, 400, 630, 774
Ecl136II	GAGCTC	1 cut(s)	970
Eco147I	AGGCCT	1 cut(s)	168
Eco24I	GRGCYC	2 cut(s)	89, 972
Eco32I	GATATC	1 cut(s)	557
Eco47I	GGWCC	1 cut(s)	432
Eco53kI	GAGCTC	1 cut(s)	970
Eco91I	GGTNACC	1 cut(s)	859
EcoICRI	GAGCTC	1 cut(s)	970
EcoNI	CCTNNNNNAGG	1 cut(s)	958
EcoO65I	GGTNACC	1 cut(s)	859
EcoRII	CCWGG	2 cut(s)	12, 571
EcoRV	GATATC	1 cut(s)	557
EcoT22I	ATGCAT	1 cut(s)	943
EcoT38I	GRGCYC	2 cut(s)	89, 972
Esp3I	CGTCTC	1 cut(s)	784
FaeI	CATG	5 cut(s)	182, 543, 635, 984, 997
FalI	AAGNNNNNCTT	2 cut(s)	938, 970
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	5 cut(s)	178, 539, 631, 980, 993
Fnu4HI	GCNGC	1 cut(s)	569
FokI	GGATG	5 cut(s)	588, 749, 760, 776, 816
FriOI	GRGCYC	2 cut(s)	89, 972
Fsp4HI	GCNGC	1 cut(s)	569
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	1 cut(s)	569
GsuI	CTGGAG	1 cut(s)	935
HaeIII	GGCC	2 cut(s)	17, 168
HhaI	GCGC	1 cut(s)	568
Hin1I	GRCGYC	1 cut(s)	990
Hin1II	CATG	5 cut(s)	182, 543, 635, 984, 997
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HinfI	GANTC	5 cut(s)	67, 266, 365, 401, 417
HphI	GGTGA	3 cut(s)	233, 677, 871
Hpy166II	GTNNAC	2 cut(s)	443, 685
Hpy188I	TCNGA	5 cut(s)	257, 271, 295, 400, 661
Hpy188III	TCNNGA	2 cut(s)	362, 914
Hpy8I	GTNNAC	2 cut(s)	443, 685
HpyAV	CCTTC	4 cut(s)	218, 319, 803, 964
HpyCH4III	ACNGT	3 cut(s)	436, 528, 807
HpyCH4V	TGCA	5 cut(s)	154, 178, 411, 590, 941
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	4 cut(s)	90, 170, 268, 701
Hsp92I	GRCGYC	1 cut(s)	990
Hsp92II	CATG	5 cut(s)	182, 543, 635, 984, 997
HspAI	GCGC	1 cut(s)	566
KspI	CCGCGG	1 cut(s)	76
Kzo9I	GATC	4 cut(s)	147, 227, 348, 611
LguI	GCTCTTC	1 cut(s)	630
LmnI	GCTCC	1 cut(s)	460
MaeIII	GTNAC	1 cut(s)	859
MalI	GATC	4 cut(s)	149, 229, 350, 613
MboI	GATC	4 cut(s)	147, 227, 348, 611
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	1 cut(s)	227
MhlI	GDGCHC	4 cut(s)	13, 89, 954, 972
MlyI	GAGTC	2 cut(s)	260, 395
MmeI	TCCRAC	5 cut(s)	84, 255, 423, 438, 532
Mph1103I	ATGCAT	1 cut(s)	943
MroXI	GAANNNNTTC	1 cut(s)	639
MseI	TTAA	9 cut(s)	21, 131, 212, 314, 321, 356, 746, 894, 945
MspA1I	CMGCKG	1 cut(s)	75
MspR9I	CCNGG	2 cut(s)	14, 573
MunI	CAATTG	1 cut(s)	585
Mva1269I	GAATGC	1 cut(s)	856
MvaI	CCWGG	2 cut(s)	14, 573
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	4 cut(s)	147, 227, 348, 611
NlaIII	CATG	5 cut(s)	182, 543, 635, 984, 997
NlaIV	GGNNCC	4 cut(s)	229, 289, 433, 951
NmuCI	GTSAC	1 cut(s)	859
NsiI	ATGCAT	1 cut(s)	943
PceI	AGGCCT	1 cut(s)	168
PciSI	GCTCTTC	1 cut(s)	630
PctI	GAATGC	1 cut(s)	856
PdmI	GAANNNNTTC	1 cut(s)	639
PfeI	GAWTC	3 cut(s)	67, 365, 417
PkrI	GCNGC	1 cut(s)	570
PleI	GAGTC	2 cut(s)	260, 395
PpsI	GAGTC	2 cut(s)	260, 395
PsiI	TTATAA	1 cut(s)	515
Psp124BI	GAGCTC	1 cut(s)	972
Psp6I	CCWGG	2 cut(s)	12, 571
PspEI	GGTNACC	1 cut(s)	859
PspGI	CCWGG	2 cut(s)	12, 571
PspN4I	GGNNCC	4 cut(s)	229, 289, 433, 951
PspPI	GGNCC	1 cut(s)	432
PstI	CTGCAG	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	227
RsaI	GTAC	2 cut(s)	428, 752
RsaNI	GTAC	2 cut(s)	427, 751
SacI	GAGCTC	1 cut(s)	972
SacII	CCGCGG	1 cut(s)	76
SapI	GCTCTTC	1 cut(s)	630
SaqAI	TTAA	9 cut(s)	21, 131, 212, 314, 321, 356, 746, 894, 945
SatI	GCNGC	1 cut(s)	569
Sau3AI	GATC	4 cut(s)	147, 227, 348, 611
Sau96I	GGNCC	1 cut(s)	432
ScaI	AGTACT	1 cut(s)	752
SchI	GAGTC	2 cut(s)	260, 395
ScrFI	CCNGG	2 cut(s)	14, 573
SduI	GDGCHC	4 cut(s)	13, 89, 954, 972
SetI	ASST	9 cut(s)	8, 50, 219, 595, 642, 702, 951, 965, 972
SfcI	CTRYAG	1 cut(s)	409
Sfr303I	CCGCGG	1 cut(s)	76
SgrBI	CCGCGG	1 cut(s)	76
SinI	GGWCC	1 cut(s)	432
SseBI	AGGCCT	1 cut(s)	168
SsiI	CCGC	3 cut(s)	73, 75, 569
SspI	AATATT	1 cut(s)	97
SstI	GAGCTC	1 cut(s)	972
StuI	AGGCCT	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	12, 571
TaaI	ACNGT	3 cut(s)	436, 528, 807
TaqI	TCGA	2 cut(s)	503, 957
TatI	WGTACW	1 cut(s)	750
TauI	GCSGC	1 cut(s)	571
TfiI	GAWTC	3 cut(s)	67, 365, 417
Tru1I	TTAA	9 cut(s)	21, 131, 212, 314, 321, 356, 746, 894, 945
Tru9I	TTAA	9 cut(s)	21, 131, 212, 314, 321, 356, 746, 894, 945
TscAI	CASTG	1 cut(s)	810
TseFI	GTSAC	1 cut(s)	859
Tsp45I	GTSAC	1 cut(s)	859
TspDTI	ATGAA	6 cut(s)	109, 291, 648, 753, 896, 969
TspGWI	ACGGA	1 cut(s)	766
TspRI	CASTG	1 cut(s)	810
VpaK11BI	GGWCC	1 cut(s)	432
XagI	CCTNNNNNAGG	1 cut(s)	958
XapI	RAATTY	3 cut(s)	194, 505, 740
XmnI	GAANNNNTTC	1 cut(s)	639
ZrmI	AGTACT	1 cut(s)	752
Zsp2I	ATGCAT	1 cut(s)	943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.