Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0017428

Physical Location & Seq

Genomic Coordinates Forward (+)

25502126 .. 25502709

Gene Structure 584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG247400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAGATGCTCGGTATGTGGATTAAAGGGTCCAAGACCCAGATATCCAAGAGCCTGGAAAGCCAATAATAAGATTGGGACCATTTCGAAATCCCTCAAGCTTGTTGAGTGTATTAAGGGTCTGTCAAATGTGAAAGAGGAGGTTTATGGGGCCCTTGATTCTTTCATTGTTTGGGAATTGAAATTCCCTTTGATTACAGTGACATTATTCTACTACAGACGGATGTTTTCAATACTTTCACTGAGCTCTTGCAGCAAACTGGAAATGTCACAAAAGGCCAGATTACAGTTGGTTGGAGCATTTGCTCATGGCTTTTATTTGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

108

Amino Acids

12.3

Weight (kDa)

9.87

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017428)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0135651
rosa_laevigata	RLG00000007044 RLG00000026784 RLG00000028578
rosa_roxburghii	Rroxscaffold_1G00041260
rosa_rugosa	Rorug04G0184000 Rorug07G0146700 Rorug07G0146800
rosa_samantha	Rh1AG390900 Rh1BG355000 Rh1DG085600 Rh1DG385700 Rh7DG247400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	182
AgsI	TTSAA	2 cut(s)	181, 231
AjnI	CCWGG	1 cut(s)	53
AluBI	AGCT	2 cut(s)	100, 246
AluI	AGCT	2 cut(s)	100, 246
Alw21I	GWGCWC	1 cut(s)	248
AoxI	GGCC	2 cut(s)	150, 276
ApaI	GGGCCC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	252
ApoI	RAATTY	1 cut(s)	182
AspS9I	GGNCC	4 cut(s)	29, 78, 150, 151
AsuII	TTCGAA	1 cut(s)	86
AvaII	GGWCC	2 cut(s)	29, 78
BaeGI	GKGCMC	1 cut(s)	154
BanII	GRGCYC	2 cut(s)	154, 248
Bbv12I	GWGCWC	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	264
BciT130I	CCWGG	1 cut(s)	55
BfmI	CTRYAG	1 cut(s)	214
BisI	GCNGC	1 cut(s)	253
BlsI	GCNGC	1 cut(s)	254
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	2 cut(s)	29, 78
BmgT120I	GGNCC	4 cut(s)	29, 78, 150, 151
BmiI	GGNNCC	4 cut(s)	30, 79, 151, 152
BmrFI	CCNGG	1 cut(s)	55
Bpu14I	TTCGAA	1 cut(s)	86
BpuEI	CTTGAG	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	233
BseNI	ACTGG	1 cut(s)	264
BseRI	GAGGAG	1 cut(s)	152
BseSI	GKGCMC	1 cut(s)	154
BseXI	GCAGC	1 cut(s)	264
BshFI	GGCC	2 cut(s)	152, 278
BsiHKAI	GWGCWC	1 cut(s)	248
BslFI	GGGAC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	2 cut(s)	152, 278
Bsp119I	TTCGAA	1 cut(s)	86
Bsp120I	GGGCCC	1 cut(s)	150
Bsp1286I	GDGCHC	2 cut(s)	154, 248
BspANI	GGCC	2 cut(s)	152, 278
BspCNI	CTCAG	1 cut(s)	234
BspLI	GGNNCC	4 cut(s)	30, 79, 151, 152
BspT104I	TTCGAA	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	2 cut(s)	199, 288
BstBI	TTCGAA	1 cut(s)	86
BstDEI	CTNAG	1 cut(s)	242
BstF5I	GGATG	1 cut(s)	228
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 252
BstNI	CCWGG	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	1 cut(s)	214
BstSLI	GKGCMC	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	264
BstXI	CCANNNNNNTGG	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	152, 278
BtsCI	GGATG	1 cut(s)	228
BtsIMutI	CAGTG	2 cut(s)	204, 239
Cfr13I	GGNCC	4 cut(s)	29, 78, 150, 151
CviAII	CATG	1 cut(s)	308
CviJI	RGCY	7 cut(s)	53, 62, 100, 152, 246, 278, 312
CviKI_1	RGCY	7 cut(s)	53, 62, 100, 152, 246, 278, 312
DdeI	CTNAG	1 cut(s)	242
Ecl136II	GAGCTC	1 cut(s)	246
Eco24I	GRGCYC	2 cut(s)	154, 248
Eco32I	GATATC	1 cut(s)	44
Eco47I	GGWCC	2 cut(s)	29, 78
Eco53kI	GAGCTC	1 cut(s)	246
EcoICRI	GAGCTC	1 cut(s)	246
EcoO109I	RGGNCCY	2 cut(s)	150, 151
EcoRII	CCWGG	1 cut(s)	53
EcoRV	GATATC	1 cut(s)	44
EcoT38I	GRGCYC	2 cut(s)	154, 248
FaeI	CATG	1 cut(s)	311
FaiI	YATR	3 cut(s)	16, 147, 309
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	1 cut(s)	307
Fnu4HI	GCNGC	1 cut(s)	253
FokI	GGATG	1 cut(s)	235
FriOI	GRGCYC	2 cut(s)	154, 248
Fsp4HI	GCNGC	1 cut(s)	253
GluI	GCNGC	1 cut(s)	253
HaeIII	GGCC	2 cut(s)	152, 278
Hin1II	CATG	1 cut(s)	311
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	1 cut(s)	158
HpyCH4III	ACNGT	2 cut(s)	199, 288
HpyCH4V	TGCA	1 cut(s)	252
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 252
HpyF3I	CTNAG	1 cut(s)	242
Hsp92II	CATG	1 cut(s)	311
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	5 cut(s)	40, 52, 67, 245, 292
Lsp1109I	GCAGC	1 cut(s)	264
MaeIII	GTNAC	2 cut(s)	199, 267
MhlI	GDGCHC	2 cut(s)	154, 248
MluCI	AATT	2 cut(s)	176, 182
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	3 cut(s)	104, 130, 133
MseI	TTAA	2 cut(s)	23, 114
MspR9I	CCNGG	1 cut(s)	55
MvaI	CCWGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	2 cut(s)	59, 252
NlaIII	CATG	1 cut(s)	311
NlaIV	GGNNCC	4 cut(s)	30, 79, 151, 152
NmuCI	GTSAC	2 cut(s)	199, 267
NspV	TTCGAA	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	254
Psp124BI	GAGCTC	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	53
PspN4I	GGNNCC	4 cut(s)	30, 79, 151, 152
PspOMI	GGGCCC	1 cut(s)	150
PspPI	GGNCC	4 cut(s)	29, 78, 150, 151
SacI	GAGCTC	1 cut(s)	248
SaqAI	TTAA	2 cut(s)	23, 114
SatI	GCNGC	1 cut(s)	253
Sau96I	GGNCC	4 cut(s)	29, 78, 150, 151
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	2 cut(s)	154, 248
SetI	ASST	3 cut(s)	102, 144, 248
SfcI	CTRYAG	1 cut(s)	214
SfuI	TTCGAA	1 cut(s)	86
SinI	GGWCC	2 cut(s)	29, 78
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	2 cut(s)	176, 182
SstI	GAGCTC	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	2 cut(s)	199, 288
TaqI	TCGA	1 cut(s)	86
TasI	AATT	2 cut(s)	176, 182
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	2 cut(s)	23, 114
Tru9I	TTAA	2 cut(s)	23, 114
TscAI	CASTG	2 cut(s)	204, 246
TseFI	GTSAC	2 cut(s)	199, 267
TseI	GCWGC	1 cut(s)	252
Tsp45I	GTSAC	2 cut(s)	199, 267
TspDTI	ATGAA	1 cut(s)	154
TspGWI	ACGGA	1 cut(s)	235
TspRI	CASTG	2 cut(s)	204, 246
VpaK11BI	GGWCC	2 cut(s)	29, 78
XapI	RAATTY	1 cut(s)	182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.