Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0017428

Physical Location & Seq

Genomic Coordinates Forward (+)

15866835 .. 15904963

Gene Structure 38129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG085600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGCAGGGAAATTATTTCGATCCCCAATACCTAGACCTTTTCCTCTGCCATGTCTTGAAGTTGGATATCTTATTGCACTGCCAGGAGGGAAACCAATTGCACCTCATAGTGATTGGAAACAATCAAAAATTCTTTTGAACCATGAAGAGCTTCAACAGATCTCCGGCCAGCCAGGCGTTGCTGCAATAAATTTGAAAGCATTCCAGTTTCTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016043 GO:0016049 GO:0016192 GO:0021700 GO:0022622 GO:0030154 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032940 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0060560 GO:0071695 GO:0071840 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TOM20_plant

Protein Analysis

72

Amino Acids

7.92

Weight (kDa)

9.65

Isoelectric Point (pI)

56.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017428)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0135651
rosa_laevigata	RLG00000007044 RLG00000026784 RLG00000028578
rosa_roxburghii	Rroxscaffold_1G00041260
rosa_rugosa	Rorug04G0184000 Rorug07G0146700 Rorug07G0146800
rosa_samantha	Rh1AG390900 Rh1BG355000 Rh1DG085600 Rh1DG385700 Rh7DG247400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	15
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	2 cut(s)	129, 190
AflII	CTTAAG	1 cut(s)	212
AgsI	TTSAA	4 cut(s)	59, 139, 155, 196
AjnI	CCWGG	2 cut(s)	82, 172
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
AlwI	GGATC	1 cut(s)	15
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	2 cut(s)	129, 190
Asp700I	GAANNNNTTC	2 cut(s)	150, 200
BbvI	GCAGC	1 cut(s)	169
BciT130I	CCWGG	2 cut(s)	84, 174
BfaI	CTAG	1 cut(s)	33
BfrI	CTTAAG	1 cut(s)	212
BglI	GCCNNNNNGGC	1 cut(s)	174
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme1390I	CCNGG	2 cut(s)	84, 174
BmrFI	CCNGG	2 cut(s)	84, 174
Bse1I	ACTGG	1 cut(s)	205
BseBI	CCWGG	2 cut(s)	84, 174
BseNI	ACTGG	1 cut(s)	205
BseXI	GCAGC	1 cut(s)	169
BshFI	GGCC	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	165
BsmI	GAATGC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	20, 159
BspANI	GGCC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	15
BspQI	GCTCTTC	1 cut(s)	141
BspTI	CTTAAG	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	205
BssMI	GATC	2 cut(s)	20, 159
Bst2UI	CCWGG	2 cut(s)	84, 174
Bst6I	CTCTTC	1 cut(s)	141
BstAFI	CTTAAG	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	170
BstKTI	GATC	2 cut(s)	23, 162
BstMBI	GATC	2 cut(s)	20, 159
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstNI	CCWGG	2 cut(s)	84, 174
BstSCI	CCNGG	2 cut(s)	82, 172
BstV1I	GCAGC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	168
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	170
CviAII	CATG	2 cut(s)	51, 143
CviJI	RGCY	3 cut(s)	151, 168, 172
CviKI_1	RGCY	3 cut(s)	151, 168, 172
DpnI	GATC	2 cut(s)	22, 161
DpnII	GATC	2 cut(s)	20, 159
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco32I	GATATC	1 cut(s)	68
EcoRII	CCWGG	2 cut(s)	82, 172
EcoRV	GATATC	1 cut(s)	68
FaeI	CATG	2 cut(s)	54, 146
FaiI	YATR	3 cut(s)	52, 108, 144
FatI	CATG	2 cut(s)	50, 142
Fnu4HI	GCNGC	1 cut(s)	183
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	1 cut(s)	165
Hin1II	CATG	2 cut(s)	54, 146
HpaII	CCGG	1 cut(s)	165
Hpy188III	TCNNGA	1 cut(s)	56
HpyCH4V	TGCA	3 cut(s)	77, 101, 185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	54, 146
Kzo9I	GATC	2 cut(s)	20, 159
LguI	GCTCTTC	1 cut(s)	141
LpnPI	CCDG	6 cut(s)	69, 96, 159, 178, 182, 186
Lsp1109I	GCAGC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	33
MalI	GATC	2 cut(s)	22, 161
MboI	GATC	2 cut(s)	20, 159
MboII	GAAGA	1 cut(s)	158
MfeI	CAATTG	1 cut(s)	96
MflI	RGATCY	1 cut(s)	159
MluCI	AATT	4 cut(s)	11, 96, 129, 190
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	3 cut(s)	54, 80, 114
MroXI	GAANNNNTTC	2 cut(s)	150, 200
MseI	TTAA	1 cut(s)	213
MspCI	CTTAAG	1 cut(s)	212
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	2 cut(s)	84, 174
MunI	CAATTG	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	200
MvaI	CCWGG	2 cut(s)	84, 174
MwoI	GCNNNNNNNGC	1 cut(s)	174
NdeII	GATC	2 cut(s)	20, 159
NlaIII	CATG	2 cut(s)	54, 146
PciSI	GCTCTTC	1 cut(s)	141
PctI	GAATGC	1 cut(s)	200
PdmI	GAANNNNTTC	2 cut(s)	150, 200
PkrI	GCNGC	1 cut(s)	184
Psp6I	CCWGG	2 cut(s)	82, 172
PspGI	CCWGG	2 cut(s)	82, 172
PsuI	RGATCY	1 cut(s)	159
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	2 cut(s)	20, 159
ScrFI	CCNGG	2 cut(s)	84, 174
SetI	ASST	4 cut(s)	34, 40, 106, 153
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	4 cut(s)	11, 96, 129, 190
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	82, 172
TaqI	TCGA	1 cut(s)	19
TasI	AATT	4 cut(s)	11, 96, 129, 190
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	84
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	84
Vha464I	CTTAAG	1 cut(s)	212
XapI	RAATTY	2 cut(s)	129, 190
XmnI	GAANNNNTTC	2 cut(s)	150, 200
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.