Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0017428

Physical Location & Seq

Genomic Coordinates Forward (+)

12991155 .. 12992065

Gene Structure 911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007044

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGATTAAGGACTTTGAAGCTGGGTGGATTAGCGAATATGAAGCACACCAAAAGAGTGTTGAATTAGCTAGTAGCAGGTTGATGGATGTTGAGAAGGAAGTGAAACTTCTCAAGGAAGGGCTTCTAAAACAGAGGCTTCCAGAAACACAAGAATCTCCAAATGAATCATGGGATGCTTGGTTAGTATGTGGGTTAAAGGGTCCAAGACCCAGATACCCAAGAGCCAGGAAAGCCAATAAGGAGATTGGGACCATTTCAAAATCCCTTAAGCTTGTTGAGTGTATTAAGGGTCTGTCAAATGTGAAAGAGGAGATTTATGGGGCCCTTGATTCTTTCATTGTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

116

Amino Acids

13.16

Weight (kDa)

7.72

Isoelectric Point (pI)

31.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017428)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0135651
rosa_laevigata	RLG00000007044 RLG00000026784 RLG00000028578
rosa_roxburghii	Rroxscaffold_1G00041260
rosa_rugosa	Rorug04G0184000 Rorug07G0146700 Rorug07G0146800
rosa_samantha	Rh1AG390900 Rh1BG355000 Rh1DG085600 Rh1DG385700 Rh7DG247400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	66
AflII	CTTAAG	1 cut(s)	266
AgsI	TTSAA	3 cut(s)	17, 62, 258
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	3 cut(s)	20, 68, 271
AluI	AGCT	3 cut(s)	20, 68, 271
AoxI	GGCC	1 cut(s)	321
ApaI	GGGCCC	1 cut(s)	325
Asp700I	GAANNNNTTC	1 cut(s)	120
AspS9I	GGNCC	4 cut(s)	200, 249, 321, 322
AvaII	GGWCC	2 cut(s)	200, 249
BaeGI	GKGCMC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	325
BccI	CCATC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	226
BfaI	CTAG	1 cut(s)	69
BfrI	CTTAAG	1 cut(s)	266
BfuAI	ACCTGC	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	226
Bme18I	GGWCC	2 cut(s)	200, 249
BmgT120I	GGNCC	4 cut(s)	200, 249, 321, 322
BmiI	GGNNCC	4 cut(s)	201, 250, 322, 323
BmrFI	CCNGG	1 cut(s)	226
BmsI	GCATC	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	226
BseGI	GGATG	2 cut(s)	91, 178
BseRI	GAGGAG	1 cut(s)	323
BseSI	GKGCMC	1 cut(s)	325
BseYI	CCCAGC	1 cut(s)	20
BshFI	GGCC	1 cut(s)	323
BslFI	GGGAC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	323
Bsp120I	GGGCCC	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	325
BspANI	GGCC	1 cut(s)	323
BspLI	GGNNCC	4 cut(s)	201, 250, 322, 323
BspMI	ACCTGC	1 cut(s)	66
BspTI	CTTAAG	1 cut(s)	266
Bst2UI	CCWGG	1 cut(s)	226
BstAFI	CTTAAG	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	91, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	224
BstSLI	GKGCMC	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	91, 178
BveI	ACCTGC	1 cut(s)	66
Cfr13I	GGNCC	4 cut(s)	200, 249, 321, 322
CviAII	CATG	1 cut(s)	168
CviJI	RGCY	8 cut(s)	20, 68, 121, 136, 224, 233, 271, 323
CviKI_1	RGCY	8 cut(s)	20, 68, 121, 136, 224, 233, 271, 323
Eco24I	GRGCYC	1 cut(s)	325
Eco47I	GGWCC	2 cut(s)	200, 249
EcoO109I	RGGNCCY	2 cut(s)	321, 322
EcoRII	CCWGG	1 cut(s)	224
EcoT38I	GRGCYC	1 cut(s)	325
FaeI	CATG	1 cut(s)	171
FaiI	YATR	4 cut(s)	39, 169, 187, 318
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	1 cut(s)	167
FokI	GGATG	2 cut(s)	98, 185
FriOI	GRGCYC	1 cut(s)	325
FspBI	CTAG	1 cut(s)	69
GsaI	CCCAGC	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	323
Hin1II	CATG	1 cut(s)	171
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	3 cut(s)	152, 164, 329
Hpy188III	TCNNGA	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	88, 110
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
Hsp92II	CATG	1 cut(s)	171
LpnPI	CCDG	6 cut(s)	6, 61, 153, 211, 223, 238
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	1 cut(s)	62
MnlI	CCTC	2 cut(s)	126, 301
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	4 cut(s)	6, 194, 267, 285
MspCI	CTTAAG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	226
MwoI	GCNNNNNNNGC	1 cut(s)	230
NlaIII	CATG	1 cut(s)	171
NlaIV	GGNNCC	4 cut(s)	201, 250, 322, 323
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	3 cut(s)	152, 164, 329
Psp6I	CCWGG	1 cut(s)	224
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	4 cut(s)	201, 250, 322, 323
PspOMI	GGGCCC	1 cut(s)	321
PspPI	GGNCC	4 cut(s)	200, 249, 321, 322
SaqAI	TTAA	4 cut(s)	6, 194, 267, 285
Sau96I	GGNCC	4 cut(s)	200, 249, 321, 322
ScrFI	CCNGG	1 cut(s)	226
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	4 cut(s)	22, 70, 80, 273
SfaNI	GCATC	1 cut(s)	163
SinI	GGWCC	2 cut(s)	200, 249
SmlI	CTYRAG	2 cut(s)	110, 266
SmoI	CTYRAG	2 cut(s)	110, 266
Sse9I	AATT	1 cut(s)	62
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	224
TasI	AATT	1 cut(s)	62
TfiI	GAWTC	3 cut(s)	152, 164, 329
Tru1I	TTAA	4 cut(s)	6, 194, 267, 285
Tru9I	TTAA	4 cut(s)	6, 194, 267, 285
TspDTI	ATGAA	3 cut(s)	54, 177, 325
Vha464I	CTTAAG	1 cut(s)	266
VpaK11BI	GGWCC	2 cut(s)	200, 249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.