Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0017428

Physical Location & Seq

Genomic Coordinates Forward (+)

11558605 .. 11561097

Gene Structure 2493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0146700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAACGACGCCGATGTCTCGAAGCAGATCCAGCAGATGGTGAGGTTCATTCGCCAAGAAGCCGAGGAAAAGGCCAACGAGATCTCCGTCTCCGCCGAAGAAGAATTCAACATTGAGAAGTTGCAGCTGGTTGAGGCTGAGAAGAAGAAGATCAGGCAAGAGTATGAGAAGAAAGAGAAGCAAGTCGAAGTCCGAAAGAAGATTGAGTATTCCATGCAGCTCAATGCTTCTCGTATTAAAGTTCTTCAAGCTCAAGATGATGTAGTCAATGCCATGAAGGATGCTGCATCCAAGGAGCTCCTGAACGTGAGCAAAGATCACCATGGGTATGCAAAGCTTCTGAAAGATCTTATCATTCAGAGTTTGCTCAGGCTGAAAGAGCCTGCTGTTTTGTTGCGTTGTCGCAAAGATGACGTGCATCTGGTGGAGTCTGTTCTGGAAGCAGCAGCACAGGAATATGCGGAGAAAAGAGATGTTCATGCACCAGAGATTATAGTTGACCATACTGTCTATCTGCCACCTGCTCCCACCCATTATAATCCCCATGTTAATTCCTGTTCTGGAGGTGTGGTCTTGGCTTCTCGAGATGGGAAGATCGTGTGTGAGAACACTCTCGATGCACGGTTGGATGTTGTATTCCGTAAAAAACTTCCTGAGATCCGCAGAAGGCTCTTCGGTCAGGTTGTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

230

Amino Acids

26.32

Weight (kDa)

7.06

Isoelectric Point (pI)

50.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
vATP-synt_E	PF01991	16 - 225	6.8e-71	ATP synthase (E/31 kDa) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017428)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0135651
rosa_laevigata	RLG00000007044 RLG00000026784 RLG00000028578
rosa_roxburghii	Rroxscaffold_1G00041260
rosa_rugosa	Rorug04G0184000 Rorug07G0146700 Rorug07G0146800
rosa_samantha	Rh1AG390900 Rh1BG355000 Rh1DG085600 Rh1DG385700 Rh7DG247400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AarI	CACCTGC	1 cut(s)	529
AasI	GACNNNNNNGTC	2 cut(s)	14, 506
Acc36I	ACCTGC	1 cut(s)	529
AccB7I	CCANNNNNTGG	1 cut(s)	37
AciI	CCGC	3 cut(s)	93, 461, 661
AclWI	GGATC	2 cut(s)	22, 652
AcsI	RAATTY	1 cut(s)	104
AcyI	GRCGYC	1 cut(s)	9
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	2 cut(s)	109, 248
AjiI	CACGTC	1 cut(s)	415
AluBI	AGCT	5 cut(s)	127, 220, 251, 298, 337
AluI	AGCT	5 cut(s)	127, 220, 251, 298, 337
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	2 cut(s)	22, 94
AlwI	GGATC	2 cut(s)	22, 652
Ama87I	CYCGRG	1 cut(s)	582
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	5 cut(s)	124, 217, 284, 443, 446
ApoI	RAATTY	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	52, 311
AvaI	CYCGRG	1 cut(s)	582
BanII	GRGCYC	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	5 cut(s)	136, 229, 271, 455, 458
BccI	CCATC	2 cut(s)	31, 581
BcoDI	GTCTC	2 cut(s)	22, 94
BfuAI	ACCTGC	1 cut(s)	529
BglII	AGATCT	2 cut(s)	81, 346
BisI	GCNGC	5 cut(s)	125, 218, 285, 444, 447
BlsI	GCNGC	5 cut(s)	126, 219, 286, 445, 448
BmeT110I	CYCGRG	1 cut(s)	582
BmgBI	CACGTC	1 cut(s)	415
BmsI	GCATC	4 cut(s)	271, 296, 427, 607
BpmI	CTGGAG	1 cut(s)	582
Bpu10I	CCTNAGC	1 cut(s)	368
BpuEI	CTTGAG	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	3 cut(s)	63, 291, 322
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 555, 585
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
BseDI	CCNNGG	3 cut(s)	63, 291, 322
BseGI	GGATG	3 cut(s)	286, 287, 634
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	3 cut(s)	129, 382, 645
BseXI	GCAGC	5 cut(s)	136, 229, 271, 455, 458
BshFI	GGCC	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	582
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	2 cut(s)	22, 94
BsmBI	CGTCTC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	74
BsoBI	CYCGRG	1 cut(s)	582
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	7 cut(s)	27, 81, 150, 316, 346, 594, 657
Bsp19I	CCATGG	1 cut(s)	322
BspACI	CCGC	3 cut(s)	93, 461, 661
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	3 cut(s)	130, 381, 646
BspMI	ACCTGC	1 cut(s)	529
BspPI	GGATC	2 cut(s)	22, 652
BspQI	GCTCTTC	1 cut(s)	677
BssECI	CCNNGG	3 cut(s)	63, 291, 322
BssMI	GATC	7 cut(s)	27, 81, 150, 316, 346, 594, 657
BssNI	GRCGYC	1 cut(s)	9
BssT1I	CCWWGG	2 cut(s)	291, 322
Bst4CI	ACNGT	2 cut(s)	508, 624
Bst6I	CTCTTC	1 cut(s)	677
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	3 cut(s)	138, 368, 654
BstDSI	CCRYGG	1 cut(s)	322
BstF5I	GGATG	3 cut(s)	286, 287, 634
BstKTI	GATC	7 cut(s)	30, 84, 153, 319, 349, 597, 660
BstMAI	GTCTC	2 cut(s)	22, 94
BstMBI	GATC	7 cut(s)	27, 81, 150, 316, 346, 594, 657
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 379
BstV1I	GCAGC	5 cut(s)	136, 229, 271, 455, 458
BstX2I	RGATCY	4 cut(s)	27, 81, 346, 657
BstYI	RGATCY	4 cut(s)	27, 81, 346, 657
BsuRI	GGCC	1 cut(s)	74
BtgI	CCRYGG	1 cut(s)	322
BtrI	CACGTC	1 cut(s)	415
BtsCI	GGATG	3 cut(s)	286, 287, 634
BveI	ACCTGC	1 cut(s)	529
Cac8I	GCNNGC	1 cut(s)	384
CseI	GACGC	1 cut(s)	17
CviAII	CATG	5 cut(s)	214, 274, 323, 479, 545
DdeI	CTNAG	3 cut(s)	138, 368, 654
DpnI	GATC	7 cut(s)	29, 83, 152, 318, 348, 596, 659
DpnII	GATC	7 cut(s)	27, 81, 150, 316, 346, 594, 657
DrdI	GACNNNNNNGTC	2 cut(s)	14, 506
DseDI	GACNNNNNNGTC	2 cut(s)	14, 506
Eam1104I	CTCTTC	1 cut(s)	677
EarI	CTCTTC	1 cut(s)	677
EciI	GGCGGA	1 cut(s)	82
Ecl136II	GAGCTC	1 cut(s)	298
Eco130I	CCWWGG	2 cut(s)	291, 322
Eco24I	GRGCYC	1 cut(s)	300
Eco53kI	GAGCTC	1 cut(s)	298
Eco88I	CYCGRG	1 cut(s)	582
EcoICRI	GAGCTC	1 cut(s)	298
EcoRI	GAATTC	1 cut(s)	104
EcoT14I	CCWWGG	2 cut(s)	291, 322
EcoT38I	GRGCYC	1 cut(s)	300
ErhI	CCWWGG	2 cut(s)	291, 322
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	5 cut(s)	217, 277, 326, 482, 548
FatI	CATG	5 cut(s)	213, 273, 322, 478, 544
Fnu4HI	GCNGC	5 cut(s)	125, 218, 285, 444, 447
FokI	GGATG	3 cut(s)	274, 293, 641
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	5 cut(s)	125, 218, 285, 444, 447
GluI	GCNGC	5 cut(s)	125, 218, 285, 444, 447
GsuI	CTGGAG	1 cut(s)	582
HaeIII	GGCC	1 cut(s)	74
HgaI	GACGC	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	5 cut(s)	217, 277, 326, 482, 548
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	1 cut(s)	428
HphI	GGTGA	2 cut(s)	52, 311
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	3 cut(s)	194, 342, 360
Hpy188III	TCNNGA	9 cut(s)	19, 254, 301, 437, 561, 582, 584, 614, 653
Hpy8I	GTNNAC	1 cut(s)	499
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	2 cut(s)	271, 660
HpyCH4III	ACNGT	2 cut(s)	508, 624
HpyCH4IV	ACGT	2 cut(s)	306, 414
HpyCH4V	TGCA	8 cut(s)	124, 217, 287, 332, 418, 482, 620, 689
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 379
HpyF3I	CTNAG	3 cut(s)	138, 368, 654
HpySE526I	ACGT	2 cut(s)	306, 414
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	5 cut(s)	217, 277, 326, 482, 548
Kzo9I	GATC	7 cut(s)	27, 81, 150, 316, 346, 594, 657
LguI	GCTCTTC	1 cut(s)	677
LmnI	GCTCC	3 cut(s)	295, 303, 529
Lsp1109I	GCAGC	5 cut(s)	136, 229, 271, 455, 458
LweI	GCATC	4 cut(s)	271, 296, 427, 607
MaeII	ACGT	2 cut(s)	306, 414
MalI	GATC	7 cut(s)	29, 83, 152, 318, 348, 596, 659
MboI	GATC	7 cut(s)	27, 81, 150, 316, 346, 594, 657
MflI	RGATCY	4 cut(s)	27, 81, 346, 657
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	2 cut(s)	104, 550
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	606
MnlI	CCTC	4 cut(s)	36, 58, 127, 557
MseI	TTAA	2 cut(s)	237, 549
MslI	CAYNNNNRTG	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	127
MwoI	GCNNNNNNNGC	2 cut(s)	31, 379
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	7 cut(s)	27, 81, 150, 316, 346, 594, 657
NlaIII	CATG	5 cut(s)	217, 277, 326, 482, 548
NmeAIII	GCCGAG	1 cut(s)	88
PaeR7I	CTCGAG	1 cut(s)	582
PaqCI	CACCTGC	1 cut(s)	529
PciSI	GCTCTTC	1 cut(s)	677
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PflMI	CCANNNNNTGG	1 cut(s)	37
PkrI	GCNGC	5 cut(s)	126, 219, 286, 445, 448
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
PsiI	TTATAA	1 cut(s)	537
Psp124BI	GAGCTC	1 cut(s)	300
PsuI	RGATCY	4 cut(s)	27, 81, 346, 657
PvuII	CAGCTG	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	327
SacI	GAGCTC	1 cut(s)	300
SapI	GCTCTTC	1 cut(s)	677
SaqAI	TTAA	2 cut(s)	237, 549
SatI	GCNGC	5 cut(s)	125, 218, 285, 444, 447
Sau3AI	GATC	7 cut(s)	27, 81, 150, 316, 346, 594, 657
SchI	GAGTC	1 cut(s)	437
SduI	GDGCHC	1 cut(s)	300
SfaNI	GCATC	4 cut(s)	271, 296, 427, 607
Sfr274I	CTCGAG	1 cut(s)	582
SlaI	CTCGAG	1 cut(s)	582
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	2 cut(s)	252, 582
SmoI	CTYRAG	2 cut(s)	252, 582
Sse9I	AATT	2 cut(s)	104, 550
SsiI	CCGC	3 cut(s)	93, 461, 661
SstI	GAGCTC	1 cut(s)	300
StyI	CCWWGG	2 cut(s)	291, 322
TaaI	ACNGT	2 cut(s)	508, 624
TaiI	ACGT	2 cut(s)	309, 417
TaqI	TCGA	4 cut(s)	20, 186, 583, 615
TaqII	GACCGA	1 cut(s)	665
TasI	AATT	2 cut(s)	104, 550
Tru1I	TTAA	2 cut(s)	237, 549
Tru9I	TTAA	2 cut(s)	237, 549
TseI	GCWGC	5 cut(s)	124, 217, 284, 443, 446
TspDTI	ATGAA	4 cut(s)	17, 37, 290, 467
TspGWI	ACGGA	2 cut(s)	76, 629
Van91I	CCANNNNNTGG	1 cut(s)	37
XapI	RAATTY	1 cut(s)	104
XhoI	CTCGAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.