Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0017428

Physical Location & Seq

Genomic Coordinates Reverse (-)

24559152 .. 24561863

Gene Structure 2712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028578

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGATCCACATACCAGAGAGACCGCCAGCGAAGCGGCCAGATTCTGATCAAGTCCGGACCACGGAGCAGCTGGAGGGGAAGCACTTTCAGTTTTCAAAGTTGAAACGTCGATTCAAAATGTCCCGCGATTCAATTCTGTCAAAGCTTCATCGTCTGATCAACGATTCTCTCCGTCCGTACCCAGAACCGGATGTTGTTTGGGTGACCAAAGAGAGAGAAATTTGGGTTAGTCTTTCTCAGCTACTTCGGCAAGTATGCGGATTAAAGGGTCCAAGACCCAGATGTCCAAGAGCTTGGAAAGCCAATAAGGAGATTGGGACCATTTCGAAATCCCTCAAGCTTGTTGAGTGTATTAAGGGTCCGTCAAATGTGAAAGAGGAGGTTTATGGGGCCCTTGATTCTTTCATTGTTTGGGAATTGGAATTCCATTTGATTACATTTCCTCTGCCATGTCTTGAAGTTGGATATCTTATTGCACTGCTAGGAGGGAAACCAATTGCACCTCATAGTGATTGGAAACAATCAAAAATTCTTTTGAACCATGAAGAGCTTCAACAGGATCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

189

Amino Acids

21.77

Weight (kDa)

9.3

Isoelectric Point (pI)

54.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017428)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0135651
rosa_laevigata	RLG00000007044 RLG00000026784 RLG00000028578
rosa_roxburghii	Rroxscaffold_1G00041260
rosa_rugosa	Rorug04G0184000 Rorug07G0146700 Rorug07G0146800
rosa_samantha	Rh1AG390900 Rh1BG355000 Rh1DG085600 Rh1DG385700 Rh7DG247400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	282
AccII	CGCG	1 cut(s)	126
AccIII	TCCGGA	1 cut(s)	54
AciI	CCGC	4 cut(s)	23, 34, 124, 258
AcoI	YGGCCR	1 cut(s)	35
AcsI	RAATTY	3 cut(s)	219, 422, 528
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	2 cut(s)	61, 187
AgsI	TTSAA	7 cut(s)	96, 103, 115, 132, 458, 538, 554
AluBI	AGCT	6 cut(s)	70, 145, 241, 293, 340, 550
AluI	AGCT	6 cut(s)	70, 145, 241, 293, 340, 550
Alw26I	GTCTC	1 cut(s)	13
AlwNI	CAGNNNCTG	1 cut(s)	44
Aor13HI	TCCGGA	1 cut(s)	54
AoxI	GGCC	2 cut(s)	35, 390
ApaI	GGGCCC	1 cut(s)	394
ApeKI	GCWGC	1 cut(s)	67
ApoI	RAATTY	3 cut(s)	219, 422, 528
Asp700I	GAANNNNTTC	1 cut(s)	549
AspS9I	GGNCC	6 cut(s)	57, 269, 318, 359, 390, 391
AsuHPI	GGTGA	1 cut(s)	214
AsuII	TTCGAA	1 cut(s)	326
AvaII	GGWCC	4 cut(s)	57, 269, 318, 359
BaeGI	GKGCMC	1 cut(s)	394
BanII	GRGCYC	1 cut(s)	394
BbvI	GCAGC	1 cut(s)	79
BclI	TGATCA	2 cut(s)	46, 156
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	563
BisI	GCNGC	2 cut(s)	35, 68
BlsI	GCNGC	2 cut(s)	36, 69
Bme18I	GGWCC	4 cut(s)	57, 269, 318, 359
BmgT120I	GGNCC	6 cut(s)	57, 269, 318, 359, 390, 391
BmiI	GGNNCC	5 cut(s)	270, 319, 360, 391, 392
BpmI	CTGGAG	1 cut(s)	92
Bpu14I	TTCGAA	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	320
BsaBI	GATNNNNATC	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	60
BsaWI	WCCGGW	2 cut(s)	54, 187
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 187
Bse8I	GATNNNNATC	1 cut(s)	45
BseAI	TCCGGA	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	196
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	2 cut(s)	61, 187
BseMII	CTCAG	1 cut(s)	251
BseRI	GAGGAG	1 cut(s)	392
BseSI	GKGCMC	1 cut(s)	394
BseXI	GCAGC	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	37, 392
BsiSI	CCGG	2 cut(s)	55, 188
BslFI	GGGAC	2 cut(s)	106, 331
BslI	CCNNNNNNNGG	2 cut(s)	61, 187
BsmAI	GTCTC	1 cut(s)	13
BsmFI	GGGAC	2 cut(s)	106, 331
BsnI	GGCC	2 cut(s)	37, 392
Bso31I	GGTCTC	1 cut(s)	13
Bsp119I	TTCGAA	1 cut(s)	326
Bsp120I	GGGCCC	1 cut(s)	390
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp13I	TCCGGA	1 cut(s)	54
Bsp143I	GATC	4 cut(s)	3, 46, 156, 559
BspACI	CCGC	4 cut(s)	23, 34, 124, 258
BspANI	GGCC	2 cut(s)	37, 392
BspCNI	CTCAG	1 cut(s)	250
BspEI	TCCGGA	1 cut(s)	54
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	5 cut(s)	270, 319, 360, 391, 392
BspQI	GCTCTTC	1 cut(s)	540
BspT104I	TTCGAA	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	13
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	4 cut(s)	3, 46, 156, 559
Bst6I	CTCTTC	1 cut(s)	540
BstBI	TTCGAA	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	1 cut(s)	237
BstDSI	CCRYGG	1 cut(s)	60
BstEII	GGTNACC	1 cut(s)	202
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	126
BstKTI	GATC	4 cut(s)	6, 49, 159, 562
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	4 cut(s)	3, 46, 156, 559
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 247, 299
BstPI	GGTNACC	1 cut(s)	202
BstSFI	CTRYAG	1 cut(s)	563
BstSLI	GKGCMC	1 cut(s)	394
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	79
BstX2I	RGATCY	1 cut(s)	559
BstXI	CCANNNNNNTGG	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	559
BsuRI	GGCC	2 cut(s)	37, 392
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	196
BtsI	GCAGTG	1 cut(s)	476
BtsIMutI	CAGTG	1 cut(s)	476
Cac8I	GCNNGC	1 cut(s)	27
CaiI	CAGNNNCTG	1 cut(s)	44
Cfr13I	GGNCC	6 cut(s)	57, 269, 318, 359, 390, 391
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	2 cut(s)	450, 542
CviJI	RGCY	9 cut(s)	37, 70, 145, 241, 293, 302, 340, 392, 550
CviKI_1	RGCY	9 cut(s)	37, 70, 145, 241, 293, 302, 340, 392, 550
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	4 cut(s)	5, 48, 158, 561
DpnII	GATC	4 cut(s)	3, 46, 156, 559
DrdI	GACNNNNNNGTC	1 cut(s)	282
DseDI	GACNNNNNNGTC	1 cut(s)	282
EaeI	YGGCCR	1 cut(s)	35
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
Eco24I	GRGCYC	1 cut(s)	394
Eco31I	GGTCTC	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	467
Eco47I	GGWCC	4 cut(s)	57, 269, 318, 359
Eco91I	GGTNACC	1 cut(s)	202
EcoO109I	RGGNCCY	2 cut(s)	390, 391
EcoO65I	GGTNACC	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	422
EcoRV	GATATC	1 cut(s)	467
EcoT38I	GRGCYC	1 cut(s)	394
FaeI	CATG	2 cut(s)	453, 545
FaiI	YATR	7 cut(s)	11, 256, 387, 451, 507, 543, 565
FaqI	GGGAC	2 cut(s)	106, 331
FatI	CATG	2 cut(s)	449, 541
FauI	CCCGC	1 cut(s)	131
FbaI	TGATCA	2 cut(s)	46, 156
Fnu4HI	GCNGC	2 cut(s)	35, 68
FokI	GGATG	1 cut(s)	203
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	2 cut(s)	35, 68
FspBI	CTAG	1 cut(s)	482
GluI	GCNGC	2 cut(s)	35, 68
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	37, 392
HapII	CCGG	2 cut(s)	55, 188
Hin1II	CATG	2 cut(s)	453, 545
HindIII	AAGCTT	2 cut(s)	143, 338
HinfI	GANTC	5 cut(s)	41, 111, 128, 164, 398
HpaII	CCGG	2 cut(s)	55, 188
HphI	GGTGA	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	46, 156
Hpy188III	TCNNGA	2 cut(s)	55, 455
Hpy99I	CGWCG	1 cut(s)	111
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	476, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 247, 299
HpyF3I	CTNAG	1 cut(s)	237
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	2 cut(s)	453, 545
Kpn2I	TCCGGA	1 cut(s)	54
Ksp22I	TGATCA	2 cut(s)	46, 156
Kzo9I	GATC	4 cut(s)	3, 46, 156, 559
LguI	GCTCTTC	1 cut(s)	540
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	9 cut(s)	27, 39, 51, 56, 68, 195, 201, 292, 542
Lsp1109I	GCAGC	1 cut(s)	79
MaeI	CTAG	1 cut(s)	482
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	4 cut(s)	5, 48, 158, 561
MboI	GATC	4 cut(s)	3, 46, 156, 559
MboII	GAAGA	1 cut(s)	557
MfeI	CAATTG	1 cut(s)	495
MflI	RGATCY	1 cut(s)	559
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	6 cut(s)	132, 219, 416, 422, 495, 528
MmeI	TCCRAC	1 cut(s)	442
MnlI	CCTC	7 cut(s)	67, 344, 370, 373, 453, 479, 513
MroI	TCCGGA	1 cut(s)	54
MroXI	GAANNNNTTC	1 cut(s)	549
MseI	TTAA	2 cut(s)	263, 354
MspA1I	CMGCKG	1 cut(s)	70
MspI	CCGG	2 cut(s)	55, 188
MunI	CAATTG	1 cut(s)	495
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	3 cut(s)	31, 247, 299
NdeII	GATC	4 cut(s)	3, 46, 156, 559
NlaIII	CATG	2 cut(s)	453, 545
NlaIV	GGNNCC	5 cut(s)	270, 319, 360, 391, 392
NmuCI	GTSAC	1 cut(s)	202
NspV	TTCGAA	1 cut(s)	326
PciSI	GCTCTTC	1 cut(s)	540
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	5 cut(s)	41, 111, 128, 164, 398
PkrI	GCNGC	2 cut(s)	36, 69
PspEI	GGTNACC	1 cut(s)	202
PspN4I	GGNNCC	5 cut(s)	270, 319, 360, 391, 392
PspOMI	GGGCCC	1 cut(s)	390
PspPI	GGNCC	6 cut(s)	57, 269, 318, 359, 390, 391
PstNI	CAGNNNCTG	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	559
PvuII	CAGCTG	1 cut(s)	70
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SapI	GCTCTTC	1 cut(s)	540
SaqAI	TTAA	2 cut(s)	263, 354
SatI	GCNGC	2 cut(s)	35, 68
Sau3AI	GATC	4 cut(s)	3, 46, 156, 559
Sau96I	GGNCC	6 cut(s)	57, 269, 318, 359, 390, 391
SduI	GDGCHC	1 cut(s)	394
SetI	ASST	9 cut(s)	72, 109, 147, 243, 295, 342, 384, 505, 552
SfcI	CTRYAG	1 cut(s)	563
SfuI	TTCGAA	1 cut(s)	326
SinI	GGWCC	4 cut(s)	57, 269, 318, 359
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	6 cut(s)	132, 219, 416, 422, 495, 528
SsiI	CCGC	4 cut(s)	23, 34, 124, 258
SspMI	CTAG	1 cut(s)	482
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	2 cut(s)	109, 326
TasI	AATT	6 cut(s)	132, 219, 416, 422, 495, 528
TauI	GCSGC	1 cut(s)	37
TfiI	GAWTC	5 cut(s)	41, 111, 128, 164, 398
Tru1I	TTAA	2 cut(s)	263, 354
Tru9I	TTAA	2 cut(s)	263, 354
TscAI	CASTG	1 cut(s)	483
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	3 cut(s)	137, 394, 558
TspGWI	ACGGA	4 cut(s)	77, 161, 165, 351
TspRI	CASTG	1 cut(s)	483
VpaK11BI	GGWCC	4 cut(s)	57, 269, 318, 359
XapI	RAATTY	3 cut(s)	219, 422, 528
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XmnI	GAANNNNTTC	1 cut(s)	549
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.