Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017501

Physical Location & Seq

Genomic Coordinates Reverse (-)

81663712 .. 81665895

Gene Structure 2184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGCAAAAATATTTAGGCCGTGGTGGTGTTGTTCGCGGCGAAGCCTATAGGGGTCGTGGAAGATACATCAAAGGTCCTCCTCGGAATGAGATAGGTACTAGAGGTCGTCCTCCTCCTCGGAATGAGATAGGGACTAGAGGTCGTCCTATTCGGTATGAGGTCGGGCCTAGAAGTCGTCCTCCTCCTCGGTATGATGTGGAGACTAGGGGTCCTCGTCCACCTCGGTATGATGTTGGGACTAGGGTTCCTCGTCCTCCTCGGAAGCAGGTTGGGATTAGGGGTCCTCGTCCTCATCGGAATGAGGTACGGGCTAGAGGTCCACGTCCTCGTAGGAATGATAAAGGGATAAGAGGTAGACAAAAAGCTGTGATCATACCACATAGGAATGAAGGTGTGTTTTATGCCAAGACTGGCAAAGAGGATGTTATCCTCACAAAGAACATGGTTCCAGGACAATCTGTTTACAATGAGAAGCGTATCTCCATTCCGAATGAAGACGGAAGCAAAGTTGAATACAGGATTTGGAACCCTCATCGCTCAAAGCTAGCAGCCGCAGTCCTAGGAGGTGTTAACAACGACATCTGGATTGTACCGGGGGCTAAGGTTCTTTACCTAGGAGCCGCTTCAGGAACCTCAGTCTCTCATGTTTCTGACATTGTTGGACCTACTGGAGTGGTATATGCTGTGGAATTTTCGGCTAGATCTGCTAGAGAATTGGTGACCATGGCACAGAAGAGAACAAATGTTATTCCAATATTTGAAGATGCAAGACACCCTGGCAAGTATCGGATGCTCGTTGGCATGGTTGATGTCATTTTCTCCGATGTTGCTCAGCCGGATCAGGCAAGGATTTTAAGTTTGAATGCAGAATATTTCCTCAAAATAGGAGGCCATTTTGTGATATCAATTAAGGCAAATTGCATAGACTCTACTAAAGATGCTGAGAAAGTGTATGAGCAAGTAAGGAATGAACTCAGAGAGAATCAGCTAAAGGCTAGAGAAGGGATCAAGCTTGAGCCTTATGAACGCCATCACGCGTGTCTTATTGGTGACTACCGAGTTCAGAAGAAACAAAACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000494 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0006139 GO:0006325 GO:0006364 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008213 GO:0008276 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0015030 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0016569 GO:0016570 GO:0016571 GO:0016592 GO:0016604 GO:0016740 GO:0016741 GO:0016787 GO:0016788 GO:0018364 GO:0019538 GO:0022613 GO:0030515 GO:0030684 GO:0031123 GO:0031126 GO:0031167 GO:0031428 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032991 GO:0033967 GO:0034470 GO:0034641 GO:0034660 GO:0034963 GO:0036009 GO:0036211 GO:0042054 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140098 GO:0140102 GO:1901360 GO:1901363 GO:1901564 GO:1990258 GO:1990259 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fibrillarin

Protein Analysis

360

Amino Acids

40.62

Weight (kDa)

10.45

Isoelectric Point (pI)

27.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fibrillarin	PF01269	126 - 353	6.3e-100	Fibrillarin
GCD14	PF08704	190 - 284	5.7e-06	tRNA methyltransferase complex GCD14 subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52490
malus_domestica	MD11G1270700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0166961
rosa_laevigata	RLG00000021684
rosa_multiflora	Rmu_sc0002735.1_g000024 Rmu_sc0005344.1_g000013
rosa_rugosa	Rorug02G0526900
rosa_samantha	Rh2AG593800 Rh2BG605300 Rh2CG576200 Rh2DG616800
rosa_wichuraiana	Rw2G049440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
AccI	GTMKAC	1 cut(s)	355
AccII	CGCG	2 cut(s)	36, 1037
AciI	CCGC	3 cut(s)	36, 552, 621
AclWI	GGATC	2 cut(s)	846, 1013
AcsI	RAATTY	1 cut(s)	689
AcuI	CTGAAG	1 cut(s)	609
AfaI	GTAC	3 cut(s)	97, 306, 591
AflIII	ACRYGT	1 cut(s)	1035
AgsI	TTSAA	3 cut(s)	512, 761, 862
AhdI	GACNNNNNGTC	2 cut(s)	138, 207
AjiI	CACGTC	1 cut(s)	323
AjnI	CCWGG	2 cut(s)	448, 775
AluBI	AGCT	4 cut(s)	365, 544, 988, 1012
AluI	AGCT	4 cut(s)	365, 544, 988, 1012
Alw26I	GTCTC	2 cut(s)	194, 643
AlwI	GGATC	2 cut(s)	846, 1013
AoxI	GGCC	3 cut(s)	16, 164, 889
ApeKI	GCWGC	1 cut(s)	548
ApoI	RAATTY	1 cut(s)	689
AspA2I	CCTAGG	2 cut(s)	559, 613
AspS9I	GGNCC	6 cut(s)	74, 164, 209, 281, 317, 662
AsuC2I	CCSGG	1 cut(s)	594
AsuHPI	GGTGA	2 cut(s)	730, 1061
AsuNHI	GCTAGC	1 cut(s)	544
AvaII	GGWCC	5 cut(s)	74, 209, 281, 317, 662
AvrII	CCTAGG	2 cut(s)	559, 613
BbsI	GAAGAC	1 cut(s)	501
BbvI	GCAGC	1 cut(s)	560
BccI	CCATC	1 cut(s)	1038
BceAI	ACGGC	1 cut(s)	3
BciT130I	CCWGG	2 cut(s)	450, 777
BclI	TGATCA	1 cut(s)	369
BcnI	CCSGG	1 cut(s)	594
BcoDI	GTCTC	2 cut(s)	194, 643
BfmI	CTRYAG	1 cut(s)	46
BfuAI	ACCTGC	1 cut(s)	256
BglII	AGATCT	1 cut(s)	701
BisI	GCNGC	4 cut(s)	37, 549, 552, 621
BlnI	CCTAGG	2 cut(s)	559, 613
BlpI	GCTNAGC	1 cut(s)	831
BlsI	GCNGC	4 cut(s)	38, 550, 553, 622
Bme1390I	CCNGG	3 cut(s)	450, 594, 777
Bme18I	GGWCC	5 cut(s)	74, 209, 281, 317, 662
BmeRI	GACNNNNNGTC	2 cut(s)	138, 207
BmgBI	CACGTC	1 cut(s)	323
BmgT120I	GGNCC	6 cut(s)	74, 164, 209, 281, 317, 662
BmiI	GGNNCC	7 cut(s)	210, 246, 282, 447, 527, 619, 631
BmrFI	CCNGG	3 cut(s)	450, 594, 777
BmsI	GCATC	3 cut(s)	754, 780, 928
BmtI	GCTAGC	1 cut(s)	548
BpiI	GAAGAC	1 cut(s)	501
BpmI	CTGGAG	1 cut(s)	690
Bpu10I	CCTNAGC	1 cut(s)	600
Bpu1102I	GCTNAGC	1 cut(s)	831
BpuEI	CTTGAG	1 cut(s)	1034
BpuMI	CCSGG	1 cut(s)	594
Bse1I	ACTGG	2 cut(s)	415, 673
BseBI	CCWGG	2 cut(s)	450, 777
BseGI	GGATG	2 cut(s)	427, 795
BseMII	CTCAG	4 cut(s)	648, 845, 933, 988
BseNI	ACTGG	2 cut(s)	415, 673
BseRI	GAGGAG	6 cut(s)	69, 102, 105, 171, 174, 246
BseXI	GCAGC	1 cut(s)	560
Bsh1236I	CGCG	2 cut(s)	36, 1037
BshFI	GGCC	3 cut(s)	18, 166, 891
BsiSI	CCGG	2 cut(s)	593, 836
BslFI	GGGAC	2 cut(s)	145, 250
BsmAI	GTCTC	2 cut(s)	194, 643
BsmFI	GGGAC	2 cut(s)	145, 250
BsmI	GAATGC	1 cut(s)	868
BsnI	GGCC	3 cut(s)	18, 166, 891
Bsp143I	GATC	4 cut(s)	369, 701, 838, 1005
Bsp1720I	GCTNAGC	1 cut(s)	831
Bsp19I	CCATGG	1 cut(s)	723
BspACI	CCGC	3 cut(s)	36, 552, 621
BspANI	GGCC	3 cut(s)	18, 166, 891
BspCNI	CTCAG	4 cut(s)	647, 844, 934, 987
BspFNI	CGCG	2 cut(s)	36, 1037
BspLI	GGNNCC	7 cut(s)	210, 246, 282, 447, 527, 619, 631
BspMI	ACCTGC	1 cut(s)	256
BspOI	GCTAGC	1 cut(s)	548
BspPI	GGATC	2 cut(s)	846, 1013
BsrI	ACTGG	2 cut(s)	415, 673
BssMI	GATC	4 cut(s)	369, 701, 838, 1005
BssT1I	CCWWGG	3 cut(s)	559, 613, 723
Bst2UI	CCWGG	2 cut(s)	450, 777
Bst6I	CTCTTC	1 cut(s)	728
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	5 cut(s)	600, 634, 831, 942, 974
BstDSI	CCRYGG	2 cut(s)	19, 723
BstEII	GGTNACC	1 cut(s)	718
BstF5I	GGATG	2 cut(s)	427, 795
BstFNI	CGCG	2 cut(s)	36, 1037
BstKTI	GATC	4 cut(s)	372, 704, 841, 1008
BstMAI	GTCTC	2 cut(s)	194, 643
BstMBI	GATC	4 cut(s)	369, 701, 838, 1005
BstMWI	GCNNNNNNNGC	1 cut(s)	704
BstNI	CCWGG	2 cut(s)	450, 777
BstPI	GGTNACC	1 cut(s)	718
BstSCI	CCNGG	3 cut(s)	448, 592, 775
BstSFI	CTRYAG	1 cut(s)	46
BstUI	CGCG	2 cut(s)	36, 1037
BstV1I	GCAGC	1 cut(s)	560
BstV2I	GAAGAC	1 cut(s)	501
BstX2I	RGATCY	1 cut(s)	701
BstYI	RGATCY	1 cut(s)	701
BsuRI	GGCC	3 cut(s)	18, 166, 891
BtgI	CCRYGG	2 cut(s)	19, 723
BtgZI	GCGATG	1 cut(s)	518
BtrI	CACGTC	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	427, 795
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	546
Cfr13I	GGNCC	6 cut(s)	74, 164, 209, 281, 317, 662
Csp6I	GTAC	3 cut(s)	96, 305, 590
CviAII	CATG	4 cut(s)	442, 644, 724, 802
CviQI	GTAC	3 cut(s)	96, 305, 590
DdeI	CTNAG	5 cut(s)	600, 634, 831, 942, 974
DpnI	GATC	4 cut(s)	371, 703, 840, 1007
DpnII	GATC	4 cut(s)	369, 701, 838, 1005
DriI	GACNNNNNGTC	2 cut(s)	138, 207
Eam1104I	CTCTTC	1 cut(s)	728
Eam1105I	GACNNNNNGTC	2 cut(s)	138, 207
EarI	CTCTTC	1 cut(s)	728
Eco130I	CCWWGG	3 cut(s)	559, 613, 723
Eco32I	GATATC	1 cut(s)	903
Eco47I	GGWCC	5 cut(s)	74, 209, 281, 317, 662
Eco57I	CTGAAG	1 cut(s)	609
Eco91I	GGTNACC	1 cut(s)	718
EcoO109I	RGGNCCY	3 cut(s)	74, 209, 281
EcoO65I	GGTNACC	1 cut(s)	718
EcoRII	CCWGG	2 cut(s)	448, 775
EcoRV	GATATC	1 cut(s)	903
EcoT14I	CCWWGG	3 cut(s)	559, 613, 723
ErhI	CCWWGG	3 cut(s)	559, 613, 723
FaeI	CATG	4 cut(s)	445, 647, 727, 805
FaqI	GGGAC	2 cut(s)	145, 250
FatI	CATG	4 cut(s)	441, 643, 723, 801
FbaI	TGATCA	1 cut(s)	369
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	4 cut(s)	37, 549, 552, 621
FokI	GGATG	2 cut(s)	434, 802
Fsp4HI	GCNGC	4 cut(s)	37, 549, 552, 621
GluI	GCNGC	4 cut(s)	37, 549, 552, 621
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	3 cut(s)	18, 166, 891
HapII	CCGG	2 cut(s)	593, 836
Hin1II	CATG	4 cut(s)	445, 647, 727, 805
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HindIII	AAGCTT	1 cut(s)	1010
HinfI	GANTC	2 cut(s)	926, 982
HpaI	GTTAAC	1 cut(s)	571
HpaII	CCGG	2 cut(s)	593, 836
HphI	GGTGA	2 cut(s)	730, 1061
Hpy166II	GTNNAC	5 cut(s)	218, 320, 356, 463, 571
Hpy188III	TCNNGA	2 cut(s)	583, 627
Hpy8I	GTNNAC	5 cut(s)	218, 320, 356, 463, 571
HpyAV	CCTTC	2 cut(s)	383, 995
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	4 cut(s)	4, 767, 866, 921
HpyF10VI	GCNNNNNNNGC	1 cut(s)	704
HpyF3I	CTNAG	5 cut(s)	600, 634, 831, 942, 974
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	4 cut(s)	445, 647, 727, 805
Ksp22I	TGATCA	1 cut(s)	369
KspAI	GTTAAC	1 cut(s)	571
Kzo9I	GATC	4 cut(s)	369, 701, 838, 1005
LmnI	GCTCC	1 cut(s)	617
Lsp1109I	GCAGC	1 cut(s)	560
LweI	GCATC	3 cut(s)	754, 780, 928
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	2 cut(s)	718, 1049
MalI	GATC	4 cut(s)	371, 703, 840, 1007
MboI	GATC	4 cut(s)	369, 701, 838, 1005
MboII	GAAGA	5 cut(s)	72, 506, 745, 773, 1078
MflI	RGATCY	1 cut(s)	701
MluCI	AATT	4 cut(s)	689, 713, 906, 916
MluI	ACGCGT	1 cut(s)	1035
MlyI	GAGTC	1 cut(s)	920
MmeI	TCCRAC	1 cut(s)	640
MseI	TTAA	3 cut(s)	570, 854, 909
MslI	CAYNNNNRTG	2 cut(s)	297, 384
MspI	CCGG	2 cut(s)	593, 836
MspR9I	CCNGG	3 cut(s)	450, 594, 777
Mva1269I	GAATGC	1 cut(s)	868
MvaI	CCWGG	2 cut(s)	450, 777
MvnI	CGCG	2 cut(s)	36, 1037
MwoI	GCNNNNNNNGC	1 cut(s)	704
NciI	CCSGG	1 cut(s)	594
NcoI	CCATGG	1 cut(s)	723
NdeII	GATC	4 cut(s)	369, 701, 838, 1005
NheI	GCTAGC	1 cut(s)	544
NlaIII	CATG	4 cut(s)	445, 647, 727, 805
NlaIV	GGNNCC	7 cut(s)	210, 246, 282, 447, 527, 619, 631
NmuCI	GTSAC	2 cut(s)	718, 1049
PctI	GAATGC	1 cut(s)	868
PfeI	GAWTC	1 cut(s)	982
PfoI	TCCNGGA	1 cut(s)	448
PkrI	GCNGC	4 cut(s)	38, 550, 553, 622
PleI	GAGTC	1 cut(s)	920
PpsI	GAGTC	1 cut(s)	920
PpuMI	RGGWCCY	3 cut(s)	74, 209, 281
Psp5II	RGGWCCY	3 cut(s)	74, 209, 281
Psp6I	CCWGG	2 cut(s)	448, 775
PspEI	GGTNACC	1 cut(s)	718
PspGI	CCWGG	2 cut(s)	448, 775
PspN4I	GGNNCC	7 cut(s)	210, 246, 282, 447, 527, 619, 631
PspPI	GGNCC	6 cut(s)	74, 164, 209, 281, 317, 662
PspPPI	RGGWCCY	3 cut(s)	74, 209, 281
PsuI	RGATCY	1 cut(s)	701
RsaI	GTAC	3 cut(s)	97, 306, 591
RsaNI	GTAC	3 cut(s)	96, 305, 590
RseI	CAYNNNNRTG	2 cut(s)	297, 384
SaqAI	TTAA	3 cut(s)	570, 854, 909
SatI	GCNGC	4 cut(s)	37, 549, 552, 621
Sau3AI	GATC	4 cut(s)	369, 701, 838, 1005
Sau96I	GGNCC	6 cut(s)	74, 164, 209, 281, 317, 662
SchI	GAGTC	1 cut(s)	920
ScrFI	CCNGG	3 cut(s)	450, 594, 777
SfaNI	GCATC	3 cut(s)	754, 780, 928
SfcI	CTRYAG	1 cut(s)	46
SinI	GGWCC	5 cut(s)	74, 209, 281, 317, 662
SmiMI	CAYNNNNRTG	2 cut(s)	297, 384
SmlI	CTYRAG	1 cut(s)	1013
SmoI	CTYRAG	1 cut(s)	1013
Sse9I	AATT	4 cut(s)	689, 713, 906, 916
SsiI	CCGC	3 cut(s)	36, 552, 621
SspI	AATATT	3 cut(s)	11, 756, 872
StyD4I	CCNGG	3 cut(s)	448, 592, 775
StyI	CCWWGG	3 cut(s)	559, 613, 723
TaiI	ACGT	1 cut(s)	325
TasI	AATT	4 cut(s)	689, 713, 906, 916
TauI	GCSGC	3 cut(s)	39, 554, 623
TfiI	GAWTC	1 cut(s)	982
Tru1I	TTAA	3 cut(s)	570, 854, 909
Tru9I	TTAA	3 cut(s)	570, 854, 909
TseFI	GTSAC	2 cut(s)	718, 1049
TseI	GCWGC	1 cut(s)	548
Tsp45I	GTSAC	2 cut(s)	718, 1049
TspDTI	ATGAA	4 cut(s)	402, 507, 984, 1038
TspGWI	ACGGA	1 cut(s)	513
VpaK11BI	GGWCC	5 cut(s)	74, 209, 281, 317, 662
XapI	RAATTY	1 cut(s)	689
XmaJI	CCTAGG	2 cut(s)	559, 613
XmiI	GTMKAC	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.